Burkh_pseud_0287 - Burkholderia pseudomallei tmRNA

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Burkholderia pseudomallei tmRNA:


    .   10    .   20    .   30    .   40    .   50
GGGGGCGACCUGGUUUCGACAGGGGUUGUGAAGCGGCUAGGGCAUGUCGA
GGACCCGUCACCUCGUUAAUCAAUGGGAAAAACGUAACUGCAAACGACGA
UACGUUCGCACUGGCAGCCUAAGGGCCGCCGUCCUCUGCCUAGUUCACUG
ACGGGCUAGUGUCGCAAGACCGGUAGCAAUACCGACAGAGGUCAUAUACG
UCAGUUAAGCCUGUCCGGCGUCACGACGGACAGGUCGAAAAUCAAGUGAA
UCGCCGUAACGGAGCGUGUUCGUCCGCGACGUCACGGUUAAAUCAAAUGA
CAGAACUAAACAUGUAGAACUGGUCGUGGACCGCUUCUGGACGCGGGUUC
GAUUCCCGCCGCCUCCACCA

{NOTE: Identical to Burkholderia mallei tmRNA}

Proteolysis Tag: (A)ANDDTFALAA*
Reading Frame (underlined): nt 90-122

Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae

Sequencing:
Burkholderia pseudomallei K96243, nt 3041943-3042312 of BX571965.1 (and nt 3041943-3042312 of NC_006350.1) [Ref 1];
Burkholderia pseudomallei 1710a, nt 44190-43821 of AAHS01000020.1 (and nt 44190-43821 of NZ_AAHS01000020.1) [Ref 2];
Burkholderia pseudomallei 1710b, nt 3310659-3311028 of CP000124.1 (and nt 3310659-3311028 of NC_007434.1[) [Ref 3];
Burkholderia pseudomallei Pasteur, nt 70396-70765 of AAHV01000013.1 (and nt 70396-70765 of NZ_AAHV01000013.1) [Ref 2];
Burkholderia pseudomallei 668, nt 44325-43956 of AAHU01000030.1 (and nt 44325-43956 of NZ_AAHU01000030.1) [Ref 2];
Burkholderia pseudomallei 1655, nt 46117-45748 of AAHR01000015.1 (and nt 46117-45748 of NZ_AAHR01000015.1) [Ref 2];
Burkholderia pseudomallei 406e, nt 15548-15179 of AAMM01000022.1 (and nt 15548-15179 of NZ_AAMM01000022.1) [Ref 2];
Burkholderia pseudomallei 1106a, nt 15521-15152 of AAMA01000042.1 (and nt 15521-15152 of NZ_AAMA01000042.1) [Ref 2];
Burkholderia pseudomallei 1106b, nt 54094-54463 of AAMB01000001.1 (and nt 54094-54463 of NZ_AAMB01000001.1) [Ref 2]

Identification: [Ref 4] in sequence data at The Sanger Centre

Reference:
1. Holden et al (2004) PNAS 101:14240-14245
2. Nierman (2005) Unpublished
3. Woods and Nierman (2005) Unpublished
4. K Williams (4-Oct-2000)

Posted: 19-Jan-2001 Updated: 5-Nov-2005

tmRNA Website ID: Burkh_pseud_0287

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