Brdrz_japon_0212 - Bradyrhizobium japonicum pre-tmRNA (precursor permuted)

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Bradyrhizobium japonicum pre-tmRNA (precursor permuted):


    .   10    .   20    .   30    .   40    .   50
GCCGGUUCGCCGGCUAUGGAAAUAAACGGUCGUCGUAAUAAACCAUUCGG
ACCCGGGGGCGGUACCCGGCGCCUCCACCAaagcccaccagcgggcuagc
ccuagaagcggguuuuggcGGGGGCGAAAUAGGAUCGACGAGGGCGUAAA
GGGCGUGCUUUUUCCCGGUAUUGUUCCGCCGUUAUCGGGCUACUGCAAUA
GUUGCCAACGACAACUUUGCUCCGGUUGCUCAGGCUGCGUAACGCAGUUU
GAAAGACCAUCUUAAAGUCCUAACGGGUUAAGCUCCGUUAGGCGGGGUUC
GGAGGCACCUGGCAACAGAAGCCUCCACUU

Two-Piece Mature tmRNA: Acceptor piece, nt 1-77; Coding piece, nt 120-330;
Internal Spacer, nt 78-119

Proteolysis Tag: (A)ANDNFAPVAQAA*
Reading Frame (underlined): nt 204-242

Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae

Sequencing:
Bradyrhizobium japonicum {strain 110rif15}, nt 802-1131 of M73823.1 [Ref 1];
Bradyrhizobium japonicum USDA 110, nt 7174984-7175313 of BA000040.2 (and nt 7174984-7175313 of NC_004463.1) [Ref 2]

Identification: [Ref 3]

Reference:
1. Ebeling, Kundig and Hennecke (1991) J Bacteriol 173:6373-82
2. Kaneko et al (2002) DNA Res 9:189-97
3. Keiler, Shapiro and Williams (2000) PNAS 97:7778-83

Posted: 10-Jul-2000

tmRNA Website ID: Brdrz_japon_0212

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