Bacro_frag1_0122 - Bacteroides fragilis pre-tmRNA, version 1 {NCTC 9434, YCH46}

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Bacteroides fragilis pre-tmRNA, version 1 {NCTC 9434, YCH46}:


    .   10    .   20    .   30    .   40    .   50
GGGGUUGACUGGUUUUGACAGCGGGCAGAAAUGGUGGGUAAGCAUGCAGU
GCGUCGGUGAUUUGCACUUUAAUCUCAGUUAUCAAAAUUUUAUCUGGCGA
AACUAAUUACGCUCUUGCUGCUUAAUCGAAUCAUAGUAGAUUAGCUUAAU
CCAGGCACCAGGUGCCAGGACGAGACAUCACUCGGAAGCUGUUGCUCCGA
AGCAUUCCGGUUCAGUGGUGCAGUUACAUCGGGGAUAGUCAGAAGUGGCC
UUGCGCUUCUGAUGAAACUUUAAAGGAUAAGGCAGGAAUUGAUGGCUUUG
GUUCUGCUCCUGCACGAAAAACUUAGGCAAAGAUAAGCAUGUAGAAAGCU
UAUGAUUUCCUCGUUUGGACGAGGGUUCGAAUCCCUCCAGCUCCACuu

Mature tmRNA has 3-prime CCA tail;

Proteolysis Tag: (A)GETNYALAA*
Reading Frame (underlined): nt 96-125

Taxonomy: Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidetes (class); Bacteroidales; Bacteroidaceae

Sequencing:
Bacteroides fragilis NCTC 9343, nt 1289246-1289643 of CR626927.1 (and nt 1289246-1289643 of NC_003228.3) [Ref 1];
Bacteroides fragilis YCH46, nt 1350686-1351083 of AP006841.1 (and nt 1350686-1351083 of NC_006347.1) [Ref 2]

Identification: [Ref 3] in sequence data at The Sanger Centre

Reference:
1. Kuwahara et al (2004) PNAS 101:14919-24
3. K Williams (21-Mar-2001)

Posted: 7-Sep-2001

tmRNA Website ID: Bacro_frag1_0122

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