Phylogenetic species list
All sequences (FastA)
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[A] [B] [C] [D-E] [F-G] [H-K] [L] [M] [N-O] [P] [R] [S] [T] [U] [W-Z]
A ↑
Acidithiobacillus ferrooxidans 1 {ATCC 23270}
Acidithiobacillus ferrooxidans 2
Acidobacterium capsulatum
Acinetobacter ADP1
Acinetobacter baumannii
Actinobacillus actinomycetemcomitans New
Actinobacillus actinomycetemcomitans
Actinobacillus pleuropneumoniae 1 {sv.1, sv.7}
Actinobacillus pleuropneumoniae 2 {sv.5}
Actinomyces naeslundii
Aeromonas hydrophila 1 {PPD134/91}
Aeromonas hydrophila 2 {ATCC 7966} Upd
Aeromonas salmonicida
Agrobacterium tumefaciens 1 {C58}
Agrobacterium tumefaciens 2 {NTL4, C58}
Agrobacterium vitis
Alcaligenes faecalis
Alcaligenes viscolactis
Alkaliphilus metalliredigenes New
Alphaproteobacteria SAR-1
Amphora coffaeformis
Anabaena variabilis
Anaplasma marginale
Anaplasma phagocytophilum
Aquifex aeolicus
Arthrobacter FB24
Azoarcus BH72
Azoarcus EbN1
Azospira oryzae
Azotobacter vinelandii
B ↑
Bacillus anthracis
Bacillus cereus 1 {ATCC 14579, G9241}
Bacillus cereus 2 {ATCC 10987}
Bacillus cereus 3 {ZK}
Bacillus clausii
Bacillus halodurans
Bacillus licheniformis
Bacillus megaterium
Bacillus subtilis
Bacillus thuringiensis 1
Bacillus thuringiensis 2 {97-27}
Bacillusphage G
Bacteria SAR-1 1
Bacteria SAR-1 2
Bacteriovorax marinus
Bacteroides fragilis 1 {NCTC 9434, YCH46}
Bacteroides fragilis 2 {638R}
Bacteroides thetaiotaomicron
Bartonella henselae
Bartonella quintana
Bdellovibrio bacteriovorus
Bifidobacterium longum 1 {DJO10A}
Bifidobacterium longum 2 {NCC2705}
Blochmannia floridanus
Blochmannia pennsylvanicus New
Bolidomonas OLI46SE
Bordetella avium
Bordetella bronchiseptica
Bordetella parapertussis
Bordetella pertussis
Borrelia burgdorferi
Borrelia garinii
Bradyrhizobium japonicum
Brevibacterium linens
Brucella abortus
Brucella melitensis
Brucella suis
Buchnera aphidicola 1 {APS}
Buchnera aphidicola 2 {Sg}
Buchnera aphidicola 3 {Bp}
Burkholderia cenocepacia
Burkholderia fungorum
Burkholderia mallei Upd
Burkholderia pseudomallei Upd
Burkholderia sp. 383 Upd
Burkholderia thailandensis
Burkholderia vietnamiensis Upd
C ↑
Caldicellulosiruptor saccharolyticus New
Campylobacter coli 1 {RM2228}
Campylobacter coli 2 {BM2509}
Campylobacter fetus 2 {23D}
Campylobacter fetus 2
Campylobacter jejuni
Campylobacter lari
Campylobacter upsaliensis
Carboxydothermus hydrogenoformans
Carnobacterium maltaromaticum Defective
Caulobacter crescentus
Chlamydia muridarum
Chlamydia trachomatis 1 {D/UW-3/CX}
Chlamydia trachomatis 2 {LGV}
Chlamydia trachomatis 3 {Jali}
Chlamydophila abortus
Chlamydophila caviae
Chlamydophila pneumoniae
Chlorobium chlorochromatii Upd
Chlorobium tepidum
Chloroflexus aurantiacus
Chromobacterium violaceum 1 {ATCC 07461}
Chromobacterium violaceum 2 {ATCC 12472}
Chromohalobacter salexigens
Chroococcidiopsis PCC6712
Citrobacter rodentium
Clavibacter michiganensis
Clostridium acetobutylicum
Clostridium botulinum
Clostridium difficile New
Clostridium difficile
Clostridium perfringens 1 {ATCC 13124}
Clostridium perfringens 2 {13}
Clostridium perfringens 3
Clostridium tetani
Clostridium thermocellum
Colwellia psychrerythraea
Comamonas testosteroni
Coprothermobacter proteolyticus
Corynebacterium diphtheriae
Corynebacterium efficiens
Corynebacterium glutamicum
Coxiella burnetii
Crocosphaera watsonii
Cupriavidus necator
Cyanidioschyzon merolae
Cyanidium caldarium
Cyanobium gracile
Cyanophora paradoxa
Cytophaga hutchinsonii
D-E ↑
Dechloromonas agitata
Dechloromonas aromatica
Dehalococcoides ethenogenes
Deinococcus geothermalis
Deinococcus radiodurans
Desulfitobacterium hafniense
Desulfotalea psychrophila
Desulfovibrio desulfuricans 1 {ATCC 27774}
Desulfovibrio desulfuricans 2 {G20}
Desulfovibrio vulgaris
Desulfuromonas acetoxidans Upd
Dichelobacter nodosus
Dictyoglomus thermophilum
Ehrlichia canis
Ehrlichia chaffeensis
Ehrlichia ruminantium 1
Ehrlichia ruminantium 2
Emiliania huxleyi Upd
Enterobacter aerogenes
Enterobacter cloacae
Enterobacter sakazakii
Enterococcus durans
Enterococcus faecalis 1 {V583}
Enterococcus faecalis 2 {CNRZ1666}
Enterococcus faecium
Erwinia amylovora
Erwinia carotovora
Erwinia chrysanthemi
Erythrobacter litoralis
Escherichia coli 1 {K12, DH10B, K1} Upd
Escherichia coli 2 {CFT073}
Escherichia coli 3 {E24377A} New
Escherichia coli 3 {O157_H7, 042} Upd
Exiguobacterium sp.
F-G ↑
Fibrobacter succinogenes
Fragilaria pinnata
Francisella tularensis 1 {Schu 4}
Francisella tularensis 2 {LVS}
Frankia sp. CcI3
Frankia sp. EAN1pec
Fremyella diplosiphon
Fusobacterium nucleatum 1 {ATCC 25586}
Fusobacterium nucleatum 2 {ATCC 10953}
Fusobacterium nucleatum 3 {ATCC 49256}
Gammaproteobacteria SAR-1
Gemmata obscuriglobus
Geobacillus kaustophilus
Geobacillus stearothermophilus
Geobacter metallireducens
Geobacter sulfurreducens
Gloeobacter violaceus
Gluconobacter oxydans
Gordonia rubripertincta
Gracilaria tenuistipitata
Guillardia theta
H-K ↑
Haemophilus ducreyi 1 {35000HP}
Haemophilus ducreyi 2 {NCTC 10945}
Haemophilus influenzae 1 {Rd, 10810}
Haemophilus influenzae 2 {R2866}
Haemophilus influenzae 3 {R2846}
Haemophilus influenzae 4 {86-028NP}
Haemophilus somnus
Helicobacter ganmani New
Helicobacter hepaticus
Helicobacter mustelae
Helicobacter pylori 1 {ATCC 43504}
Helicobacter pylori 2 {26695}
Helicobacter pylori 3 {J99}
Heliobacillus mobilis
Histiona aroides
Hydrogenophaga palleronii
Hyphomonas neptunium
Idiomarina loihiensis
Jakoba libera
Jannaschia sp. CCS1
Kineococcus radiotolerans
Klebsiella aerogenes
Klebsiella pneumoniae
Kocuria varians New
L ↑
Lactobacillus acidophilus
Lactobacillus brevis
Lactobacillus casei
Lactobacillus delbrueckii 1 {NCTC 662}
Lactobacillus delbrueckii 2 {ATCC BAA-365}
Lactobacillus gallinarum
Lactobacillus gasseri
Lactobacillus helveticus
Lactobacillus johnsonii
Lactobacillus plantarum 1 {CNRZ211}
Lactobacillus plantarum 2 {WCFS1}
Lactobacillus sakei
Lactococcus garvieae
Lactococcus lactis 1 {Il1403, CNRZ124, Il1403, CNRZ124, IL986, CNRZ188}
Lactococcus lactis 2 {MG1363, CNRZ112, CNRZ355, IL582, CNRZ119, IL960, IL2961, SK11}
Lactococcus lactis 3 {CNRZ337, NCDO2118, IL638, IL2962, IL890}
Lactococcus lactis 4 {IL2961}
Lactococcus plantarum
Lactococcus raffinolactis
Lawsonia intracellularis
Legionella pneumophila
Leifsonia xyli
Leptolyngbya boryana
Leptospira interrogans
Leptospirillum ferrooxidans
Leptospirillum groupII
Leptospirillum groupIII
Leuconostoc lactis
Leuconostoc mesenteroides
Leuconostoc pseudomesenteroides
Listeria grayi 1 {NCTC 10812}
Listeria grayi 2 {NCTC 10815}
Listeria innocua 1 {CLIP8811}
Listeria innocua 2 {Clip11262, food 1, food 2, food 3, NCTC 11288, NCTC 12210}
Listeria innocua 3 {ATCC 12210}
Listeria ivanovii
Listeria monocytogenes 1 {ATCC 15313, 4b F2365, 4b H7858, 1/2a F6854}
Listeria monocytogenes 2 {EGD-e}
Listeria monocytogenes 3 {clinical 1, clinical 2, NCTC 10888, NCTC 11994, NCTC 5348, NCTC 7973}
Listeria seeligeri
Listeria welshimeri
M ↑
Magnetococcus sp.
Magnetospirillum magnetotacticum 1
Magnetospirillum magnetotacticum 2
Mannheimia haemolytica
Mannheimia succiniciproducens
Marinobacter aquaeolei New
Marinobacter hydrocarbonoclasticus
Mastocarpus papillata
Mesoplasma florum
Mesorhizobium loti
Mesorhizobium sp.
Mesostigma viride
Methylobacillus flagellatus
Methylobacillus glycogenes
Methylobacterium extorquens
Methylococcus capsulatus
Moorella thermoacetica
Moraxella catarrhalis
Mycobacteriophage Bxz1
Mycobacterium africanum
Mycobacterium avium 1 {104}
Mycobacterium avium 2 {k10}
Mycobacterium bovis
Mycobacterium chelonae
Mycobacterium flavescens
Mycobacterium gordonae
Mycobacterium intracellulare
Mycobacterium kansasii
Mycobacterium leprae
Mycobacterium malmoense
Mycobacterium marinum 1
Mycobacterium marinum 2
Mycobacterium microti 1
Mycobacterium microti 2
Mycobacterium scrofulaceum
Mycobacterium smegmatis
Mycobacterium szulgai
Mycobacterium tuberculosis 1 {H37Rv, CDC1551} Upd
Mycobacterium tuberculosis 2 {210}
Mycobacterium xenopi
Mycoplasma arthritidis
Mycoplasma capricolum
Mycoplasma gallisepticum
Mycoplasma genitalium
Mycoplasma hyopneumoniae 1
Mycoplasma hyopneumoniae 2 New
Mycoplasma mobile
Mycoplasma mycoides
Mycoplasma penetrans
Mycoplasma pneumoniae
Mycoplasma pulmonis
Myxococcus xanthus
N-O ↑
Neisseria gonorrhoeae 1 {ATCC 19424}
Neisseria gonorrhoeae 2 {FA 1090}
Neisseria lactamica
Neisseria meningitidis 1 {Z2491}
Neisseria meningitidis 2 {MC58}
Neisseria meningitidis 3 {FAM18}
Neorickettsia sennetsu
Nephroselmis olivacea
Nitrobacter hamburgensis New
Nitrobacter Nb-311A New
Nitrobacter winogradskyi
Nitrosococcus oceani
Nitrosomonas cryotolerans
Nitrosomonas europaea
Nitrosospira multiformis
Nocardia asteroides 1
Nocardia asteroides 2
Nocardia farcinica
Nostoc PCC7120
Nostoc punctiforme
Novosphingobium aromaticivorans
Oceanobacillus iheyensis
Odontella sinensis
Oenococcus oeni
Oscillatoria PCC6304
Oscillatoria sancta
P ↑
Paenibacillus larvae
Paenibacillus macerans
Pantoea stewartii
Parachlamydia UWE25
Paracoccus denitrificans
Pasteurella multocida
Pavlova lutheri
Pediococcus pentosaceus
Photobacterium phosphoreum
Photobacterium profundum
Photorhabdus asymbiotica
Photorhabdus luminescens
Phytoplasma asteris 1
Phytoplasma asteris 2 New
Polaromonas JS666
Porphyra purpurea
Porphyromonas gingivalis
Prevotella intermedia
Prevotella ruminicola
Prionitis lanceolata
Prochlorococcus marinus 1 {CCMP1986}
Prochlorococcus marinus 2 {MIT 9313}
Prochlorococcus marinus 3 {CCMP1375}
Prochlorococcus marinus 4 {NATL2A} New
Propionibacterium acnes 1 Defective
Propionibacterium acnes 1
Propionibacterium acnes 2 Defective
Propionibacterium acnes 2
Proteobacteria SAR-1 1
Proteobacteria SAR-1 1
Proteobacteria SAR-1 1
Proteus mirabilis
Proteus vulgaris
Providencia rettgeri
Prymnesium parvum
Pseudoalteromonas atlantica New
Pseudoalteromonas haloplanktis 1 {ATCC14393}
Pseudoalteromonas haloplanktis 2 {TAC125} New
Pseudomonas aeruginosa
Pseudomonas chlororaphis
Pseudomonas fluorescens 1 {PfO-1}
Pseudomonas fluorescens 2 {SBW25}
Pseudomonas fluorescens 3 {Pf-5}
Pseudomonas fluorescens 4 {ATCC 17400}
Pseudomonas putida 1 {KT2440}
Pseudomonas putida 2 {ATCC 12633}
Pseudomonas syringae 1 {DC3000}
Pseudomonas syringae 2 {B728a}
Pseudomonas syringae 3 {1448A}
Psychrobacter arcticus Upd
Psychrobacter cryohalolentis New
Psychrobacter urativorans
Pylaiella littoralis
R ↑
Ralstonia eutropha
Ralstonia metallidurans
Ralstonia pickettii
Ralstonia solanacearum
Reclinomonas americana 1 {ATCC 50394}
Reclinomonas americana 2 {ATCC 50283}
Reclinomonas americana 3 {ATCC 50284}
Rhizobium leguminosarum
Rhodobacter sphaeroides
Rhodococcus equi
Rhodomonas salina
Rhodopirellula baltica
Rhodopseudomonas palustris 1 {CGA009}
Rhodopseudomonas palustris 2 {HaA2} New
Rhodopseudomonas palustris 3 {BisB18} New
Rhodopseudomonas palustris 4 {BisB18} New
Rhodopseudomonas palustris 5 {BisB5} New
Rhodosorus marinus
Rhodospirillum rubrum
Rickettsia akari
Rickettsia conorii 1 {Malish 7, URRCMFEe8}
Rickettsia conorii 2 {URRCMFEe5}
Rickettsia conorii 3 {URRCMFEe32}
Rickettsia felis New
Rickettsia prowazekii
Rickettsia rickettsii
Rickettsia sibirica
Rickettsia typhi
Rubrivivax gelatinosus
Rubrobacter xylanophilus
Ruminococcus albus
S ↑
Saccharophagus degradans
Salinibacter ruber
Salmonella bongori
Salmonella enterica 1 {Typhi, Typhimurium}
Salmonella enterica 2 {Paratyphi}
Salmonella enterica 3 {Enteritidis, Dublin, Pullorum, Gallinarum}
Salmonella enterica 4 {arizonae}
Salmonella enterica 5 {diarizonae}
Salmonella enterica 6 {Choleraesuis}
Seculamonas ecuadoriensis
Serratia marcescens 1 {BH}
Serratia marcescens 2 {Db11}
Shewanella amazonensis New
Shewanella ANA-3
Shewanella baltica New
Shewanella denitrificans
Shewanella frigidimarina New
Shewanella oneidensis
Shewanella putrefaciens
Shewanella PV-4
Shewanella SAR-1 1
Shewanella SAR-1 2
Shewanella SAR-2
Shigella boydii New
Shigella dysenteriae 1 {M131649}
Shigella dysenteriae 2 {1012} New
Shigella flexneri
Shigella sonnei Upd
Silicibacter pomeroyi
Silicibacter TM1040
Sinorhizobium meliloti
Skeletonema costatum
Solibacter usitatus Upd
Sphingomonas elodea
Sphingopyxis alaskensis
Spiroplasma kunkelii
Staphylococcus aureus 1 {COL, NCTC 8325, NCTC6571}
Staphylococcus aureus 2 {MRSA252}
Staphylococcus aureus 3 {MSSA476}
Staphylococcus aureus 4 {Mu50}
Staphylococcus aureus 5 {MW2}
Staphylococcus aureus 6 {N315}
Staphylococcus epidermidis 1 {ATCC 14990}
Staphylococcus epidermidis 2 {SR1, RP62A}
Staphylococcus epidermidis 3 {DSM20044, ATCC 12228}
Staphylococcus saprophyticus
Staphylococcus xylosus
Stenotrophomonas maltophilia
Streptococcus agalactiae 1 {2603V/R, A909} Upd
Streptococcus agalactiae 2 {NEM316, 515, COH1} Upd
Streptococcus equi
Streptococcus gordonii
Streptococcus mitis
Streptococcus mutans
Streptococcus pneumoniae 1 {Tigr4, R6} Upd
Streptococcus pneumoniae 2 {R6, 670-6B}
Streptococcus pneumoniae 3 {23F}
Streptococcus pyogenes 1 {M1 GAS, Manfredo, M49} Upd
Streptococcus pyogenes 2 {MGAS8232, MGAS315, SSI-1, MGAS10394}
Streptococcus pyogenes 3
Streptococcus sobrinus
Streptococcus suis 1 {P1/7}
Streptococcus suis 2 {89/1591}
Streptococcus thermophilus 1 {CNRZ1358}
Streptococcus thermophilus 2 {LMD-9}
Streptococcus thermophilus 3 {CNRZ1066, LMG 18311}
Streptococcus uberis
Streptococcus zooepidemicus
Streptomyces aureofaciens
Streptomyces avermitilis
Streptomyces coelicolor
Streptomyces collinus
Streptomyces lividans New
Streptomyces scabies Defective
Sulfurihydrogenibium azorense
Synechococcus CC9311
Synechococcus CC9605 New
Synechococcus CC9902 New
Synechococcus elongatus
Synechococcus PCC6904
Synechococcus PCC7002
Synechococcus PCC7009
Synechococcus WH8102
Synechocystis PCC6803
Syntrophus aciditrophicus New
T ↑
Tannerella forsythensis
Thalassiosira pseudonana
Thalassiosira weissflogii
Thermoanaerobacter tengcongensis
Thermobifida fusca
Thermodesulfobacterium commune
Thermodesulfovibrio yellowstonii
Thermomicrobium roseum
Thermosynechococcus elongatus
Thermotoga maritima 1 {MSB8}
Thermotoga maritima 2 {MSB8}
Thermotoga neapolitana
Thermus thermophilus 1 {HB8}
Thermus thermophilus 2 {HB8, HB27}
Thiobacillus denitrificans
Thiomicrospira crunogena New
Tremblaya princeps 1 {Dysmicoccus}
Tremblaya princeps 2 {Ferrisia}
Tremblaya princeps 3 {Maconellicoccus}
Tremblaya princeps 4 {Planococcus}
Tremblaya princeps 5 {Paracoccus}
Tremblaya princeps 6 {Melanococcus}
Treponema denticola
Treponema pallidum
Trichodesmium erythraeum
Tropheryma whipplei
U ↑
Uncultured aedes1
Uncultured anopheles1
Uncultured aphid1 New
Uncultured aphid2 New
Uncultured bone1
Uncultured bone2
Uncultured bone3
Uncultured c_remanei1
Uncultured cactusRCA1
Uncultured cactusRCA2
Uncultured cactusRCA4
Uncultured cactusRCA7
Uncultured candida1 New
Uncultured chicken1
Uncultured ciona
Uncultured creekVLW1
Uncultured creekVLW2
Uncultured creekVLW3
Uncultured creekVLW5
Uncultured creekVLW6
Uncultured farm1
Uncultured farm2
Uncultured farm3
Uncultured farm4
Uncultured farm5
Uncultured farm6
Uncultured farm7
Uncultured farm8
Uncultured flatworm1
Uncultured hookworm2
Uncultured hotspringQL1
Uncultured human1
Uncultured human2
Uncultured human3
Uncultured human4
Uncultured human5
Uncultured human6
Uncultured lakeLEM1
Uncultured lakeLEM2
Uncultured leafU01a
Uncultured leafU01b
Uncultured leafU02
Uncultured leafU04
Uncultured marine_HF10 New
Uncultured marineEBAC20E09
Uncultured phakopsora1 New
Uncultured pollen1
Uncultured pondVLS13
Uncultured pondVLS1
Uncultured pondVLS3
Uncultured pondVLS4
Uncultured pondVLS6
Uncultured pondVLS7
Uncultured pondVLS8
Uncultured pondVLS9
Uncultured pondWW10
Uncultured pondWW11
Uncultured pondWW1
Uncultured pondWW2
Uncultured pondWW3
Uncultured pondWW4
Uncultured pondWW5
Uncultured pondWW6
Uncultured pondWW7
Uncultured pondWW8
Uncultured pondWW9
Uncultured rice2
Uncultured rice4
Uncultured root1
Uncultured stronglyoides1
Uncultured swampFS2
Uncultured toxoplasma1
Uncultured toxoplasma2
Uncultured weevil-associated
Uncultured whale1
Uncultured whale2
Uncultured whale3
Uncultured whale4
Uncultured whale5
Uncultured whale6
Uncultured zebu1
Ureaplasma parvum
Variovorax paradoxus
Verrucomicrobium spinosum
Vibrio cholerae 1 Upd
Vibrio cholerae 2 {V51} New
Vibrio Ex25 New
Vibrio fischeri
Vibrio parahemolyticus
Vibrio vulnificus
W-Z ↑
Wigglesworthia glossinidia
Wolbachia sp. 1 {Dros. melan.}
Wolbachia sp. 2 {Brugia}
Wolbachia sp. 3 {Culex}
Wolbachia sp. 4 {Dros. simul.}
Wolinella succinogenes
Xanthomonas axonopodis
Xanthomonas campestris 1 {campestris}
Xanthomonas campestris 2 {vesicatoria} New
Xanthomonas oryzae
Xylella fastidiosa 1 {9a5c}
Xylella fastidiosa 2 {Dixon, Ann-1} Upd
Xylella fastidiosa 3 {Ann-1}
Xylella fastidiosa 4 {Temecula1}
Yersinia bercovieri Upd
Yersinia enterocolitica
Yersinia frederiksenii New
Yersinia intermedia New
Yersinia mollaretii New
Yersinia pestis Upd
Yersinia pseudotuberculosis Upd
Zymomonas mobilis