tRNA Domain (remainder of tmRNA replaced by +) Alignment 15-Feb-2006 by Kelly Williams for The tmRNA Website, with base-pairing color-coded as in home page diagram. Underline marks the predicted reading frame for the proteolysis-inducing peptide tag. Lowercase marks segments not homologous to tmRNA, intervening segments that are absent in the mature tmRNA, and portions of the expected 3-prime CCA tail that are not encoded in the genome. GAMMA-PROTEOBACTERIA Acidithiobacillales Acthi_ferr1 GGGGGCG------ACCGGC--UUCGACGCAGGUCGC------GAAGCCUUCGGUGCAUGC + GCA-UGUAG----------------------AUCCGGUGGUCU------AGGUACUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Acthi_ferr1 Acthi_ferr2 GGGGGCG------ACCGGC--UUCGACGCAGGUCGC------GAAGCCUUCGGUGCAUGC + GCA-UGUAG----------------------AUCCGGUGGUCU------AGGUACUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Acthi_ferr2 Xanthomonadales Xylel_fast1 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC + GCA-UGUAG----------------------GGCCGGGGAUGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast1 Xylel_fast2 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC + GCA-UGUAG----------------------GGCCGGGGAUGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast2 Xylel_fast3 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC + GCA-UGUAG----------------------GGCCGGGGAUGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast3 Xylel_fast4 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC + GCA-UGUAG----------------------GGCCGGGGACGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast4 Xanmo_camp1 GGGGGUG-----CACUGGU--UUCGACGGGGGUCGC-----GAAGUCGCUUGGCGCAUGC + GCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCUUCCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xanmo_camp1 Xanmo_camp2 GGGGGUG-----CACUGGU--UUCGACGGGGGUCGC-----GAAGUCGCUUGGCGCAUGC + GCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCUUCCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xanmo_camp2 Xanmo_axono GGGGGUG-----CACUGGU--UUCGACGGGGGUCGC-----GAAGUCGCUUGGCGCAUGC + GCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCUUCCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xanmo_axono Xanmo_oryza GGGGGUG-----CACUGGU--UUCGACGGGGGUCGC-----GAAGUCGCUUGGCGCAUGC + GCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCUUCCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xanmo_oryza Uncul_rice4 GGGGGUG-----CAUUGGU--UUCGACGGGGGUUGU-----GAAGUCGCCUGGCGCAUGC + GCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCCUUCGGAC-GGCGGUUCAAUUCCGCC-CACCUCCACCA Uncul_rice4 Uncult_U01a NNNNNNN-----NNNNNNN--NNNNNNGCUGGUAAC-----GGAAUCCG-AAGUGCAUGC + GCA-UGUAG----------------------AUCUGAGGGCUA------CGAUCUGGCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_U01a Uncult_U01b NNNNNNN-----NNNNNNN--NNNNNNGCUGGUAAC-----GGAAUCCG-AAGUGCAUGC + GCA-UGUAG----------------------AUCUGAGGGCUA------CGAUCUGGCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_U01b Steno_malto GGGGGUG-----CAUUGGU--UUCGACGGGGGUUGU-----GAAGUCGCCUGGCGCAUGC + GCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCCUUCGGAC-GGCGGUUCAAUUCCGCC-CACCUCCACCA Steno_malto Cardiobacteriales Diche_nodos GGGGGCG----UUCUUGGA--UUCGACGGGGAUUGCG------AGGCUCGAGGUGCAUGU + ACA-UGUAG----------------------UACCAAAAGUUA------AGGAUUCGCGGAC-GGGGGUUCAAAUCCCCC-CGCCUCCACCA Diche_nodos Thiotrichales Franc_tula1 GGGGGCG----AAUAUGGU--UUCGACAUGAAUGUC-----AAAAUCU-AAGGUGCAUGC + GCA-UGUAG----------------------AUCCAAAGAUCU------AGAGUUUGUGGAC-GCGGGUUCAAAUCCCGC-CGCCUCCACCA Franc_tula1 Franc_tula2 GGGGGCG----AAUAUGGU--UUCGACAUGAAUGUC-----AAAAUCU-AAGGUGCAUGC + GCA-UGUAG----------------------AUCCAAAGAUCU------AGAGUUUGUGGAC-GCGGGUUCAAAUCCCGC-CGCCUCCACCA Franc_tula2 Thmic_cruno GGGGAUG-----CACUGGU--UUCGACGGGGAGUAC-----AAAGUUU-AGGAUGCAUGU + ACA-UGUAG----------------------AGUUUUAAAUGG------AGGCUUCUCGGAC-GGCGGUUCGACUCCGCC-CAUCUCCACCA Thmic_cruno Chromatiales Ntsco_ocean GGGGGCG-----ACCUGGC--UUCGACGCGGGUAGC-----AAAACCU-AAGGGGCAUGC + GCA-UGUAG----------------------AACCGAAGGCGG------AGUACUUGUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Ntsco_ocean Uncul_whal1 GGGGGCG-----UAUUGGA--UUCGACGCCGGUUAC-----AAAACUU-GAGGUGCAUGC + GCA-UGUAG----------------------AGCCGAUAGCAG------CGGACUGACGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Uncul_whal1 Legionellales Legio_pneum GGGGGCG-----ACCUGGC--UUCGACGUGGGUUGC-----AAAACCG-GAAGUGCAUGC + GCA-UGUAG----------------------AGCUAAAGGCAG------AGGACUUGCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Legio_pneum Bctr_SAR1_1 NNNNNNN-----NNN-NNN--NNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNN + GCA-UGUAG----------------------AAGUUAGGCUGA------AGGAUUGACGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Bctr_SAR1_1 Bctr_SAR1_2 GGGGGCG-----ACC-GGU--UUCGACAUUUUAGAA----UGAAAUCUUAGAUUGCAUGU + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Bctr_SAR1_2 Shew_SAR2_2 GGGGGCG-----ACC-GGU--UUCGACGGGGUAAGA-----UAAUGAUAAGAUUGCAUGC + GUA-UGUAG----------------------ACGUUUUGUUAG-----AAUCUAUCUCGGAC-GGGAGUUCGAAUCUCCC-CGCCUCCACau Shew_SAR2_2 Coxie_burne GGGGGCG-----ACCAGGC--UUCGACGUGGAUCCU-----GAAACCC-GAGACGCAUGU + GCA-UGUAG----------------------UGUCAACGGCGG------AUGAUUUACGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCAuca Coxie_burne Methylococcales Mecoc_capsu GGGGGCG-----ACAUGGC--UUCGACGUGGAUCGC-----GAAACCU-GAGGUGCAUGC + GCA-UGUAG----------------------AACCGAUGGCAG------AGGAUUUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Mecoc_capsu Shew_SAR1_2 GGGGGCG-----AAUAGGG--UUCGACGUUUCUACU-----GGACUCC-GAAGCGCAUGC + GCA-UGUAG----------------------AAGUUAGGCUGA------AGGAUUGACGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Shew_SAR1_2 Uncult_EBAC GGGGGCG-----AAUAGGG--UUCGACGUUUCUACU-----GGACUCC-GAAGCGCAUGC + GCA-UGUAG----------------------AAGUUAGGCUGA------AGGAUUAGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Uncult_EBAC Pseudomonadales Azotb_vinel GGGGCCG-----AUUAGGA--UUCGACGCCGGUAAC-----GAAACUU-GAGGGGCAUGC + GCA-UGUAG----------------------AACCGAUAGCGG------AGAGCUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Azotb_vinel Uncul_bone1 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNNNN-----NNNNNNN-NNNNNNNNNNN + GCA-UGUAG----------------------AACCGAUAGCGG------CGGACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Uncul_bone1 Psmon_aerug GGGGCCG-----AUUAGGA--UUCGACGCCGGUAAC-----AAAACUU-GAGGGGCAUGC + GCA-UGUAG----------------------AACCGAUAGCGG------AGAGCUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_aerug Psmon_syri1 GGGGCCG-----AUUUGGA--UUCGACGCCGGUGAU-----GAAACUU-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_syri1 Psmon_syri2 GGGGCCG-----AUUUGGA--UUCGACGCCGGUGAU-----GAAACUU-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_syri2 Psmon_syri3 GGGGCCG-----AUUUGGA--UUCGACGCCGGUGAU-----GAAACUU-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_syri3 Psmon_fluo1 GGGGCCG-----UUUAGGA--UUCGACGCCGGUUGC-----GAAACUC-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_fluo1 Psmon_fluo2 GGGGCCG-----UUUAGGA--UUCGACGCCGGUCGC-----GAAACUU-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_fluo2 Uncul_cand1 GGGGCCG-----UUUAGGA--UUCGACGCCGGUUGC-----GAAACUU-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Uncul_cand1 Uncul_humn1 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNNNN-----NNNNNNN-NNNNNNNNNNN + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Uncul_humn1 Uncul_chck1 GGGGCCG-----UUUAGGA--UUCGACGCCGGUUGC-----GAAACUU-UAGGUGCAUGC + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN Uncul_chck1 Psmon_fluo3 GGGGCCG-----UUUAGGA--UUCGACGCCGGUUGC-----GAAACUU-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_fluo3 Psmon_fluo4 NNNNNNN----NNNNNNNN--NNNNNNGCCGGUUGC-----GAACCUU-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCAG------AGUACUGGCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Psmon_fluo4 Psmon_chlor NNNNNNN-----NNNNNNN--NNNNNNGCCGGUUGC-----GAAACUU-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Psmon_chlor Psmon_puti1 GGGGCCG-----AUUAGGA--UUCGACGCCGGUAGC-----GAAACUC-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_puti1 Psmon_puti2 NNNNNNN-----NNNNNNN--NNNNNNGCCGGUAGC-----GAAACUC-UAGGUGCAUGC + GCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Psmon_puti2 Morax_catar GGGGAUG-----UUCUGGC--UUCGACGCUGGUAGC-----GAAACCUAAUGAUGCAUGU + GCA-UGUAG----------------------AUUCAUAGAUGU------AGUACUGGCGGAC-GCGGGUUCGACUCCCGC-CAUCUCCACCA Morax_catar Acinbr_ADP1 GGGGAUG----UUAUUGGC--UUCGACGCUGGUGAU-----GAAGCUCAUAGAUGCAUGC + GCA-UGUAG----------------------UAUUCUCGAGUG-----UAGUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Acinbr_ADP1 Acinb_bauma NNNNNNN----NNNNNNNN--NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNN + NNN-NNNNN----------------------NNNNNNNNNNNN-----NNNUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Acinb_bauma Uncul_reman GGGGAUG----UUAUUGGC--UUCGACGCCGAUGAU-----GAAGCUCAUAGAUGCAUGC + GCA-UGUAG----------------------UAUUCUCGAGUG-----UAGUGUUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Uncul_reman Uncul_bone3 GGGGAUG-----UUCUGGC--UUCGACGCUGGUGAU-----GAAACUCAAUGAUGCAUGU + ACA-UGUAG----------------------AUUCAUGAGCGU------AAUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Uncul_bone3 Psycb_cryha GGGGAUG-----UUCUGGC--UUCGACGCUGGUGAU-----GAAACUCAAUGAUGCAUGU + ACA-UGUAG----------------------AUUCAUGAGCGU------AAUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Psycb_cryha Psycb_arcti GGGGAUG-----UUCUGGC--UUCGACGCUGGUGAU-----GAAACUCAAUGAUGCAUGU + ACA-UGUAG----------------------AUUCAUGAGCGU------AAUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Psycb_arcti Psycb_urati NNNNNNN------NNNNNN--NNNNNNGCUGGUGAU-----GAAACUCAAUGAUGCAUGU + ACA-UGUAG----------------------AUUCAUGAGCGU------AAUGCUGGCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Psycb_urati Oceanospirillales Chrha_salex GGGGGCG-----ACAUGGC--UUCGACGCCGGUGAC-----AAUCCCU-GAGGUGCAUGC + GCA-UGUAG----------------------AGCCGAUGGGUG------AGUGCCGGCGGAC-GGGGGUUCAAUUCCCCC-CGCCUCCACCA Chrha_salex Alteromonadales Marbr_hydro NNNNNNN----NNNNNNNN--NNNNNNGCCGGUGAC-----GAACCCU-UGGGUGCAUGC + GCA-UGUAG----------------------ACCUCAAGGCCU------AGUGCUGGCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Marbr_hydro Marbr_aquae GGGGACG-----ACUUGGC--UUCGACGCCGGUGAC-----GAACCCU-UGGGUGCAUGC + GCA-UGUAG----------------------ACCUCAAGGCCU------AGUGCUGGCGGAC-GCGGGUUCAAUUCCCGC-CGUCUCCACCA Marbr_aquae Micbu_degra GGGGGCG-----AUUAGGA--UUCGACGCCGGUAAC-----AAAACCC-GAAGUGCAUGU + GCA-UGUAG----------------------AGCUGACGGCGG------AGUACUGACGGAC-GGGGGUUCAAAUCCCCC-CGCCUCCACCA Micbu_degra Uncul_flatw GGGGACG-----ACAUGGC--UUCGACGCUGGUAAC-----AAAACCA-AAGGUGCAUGU + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNUNNNN Uncul_flatw Gamprb_SAR1 GGGGGCG----UAUUAGGC--UUUGACGUCUACCAC-----GGAACCC-AAAGUGCAUAC + GUA-UGUAG----------------------AGACUAGGGGAA------AGUGAUGACGGAC-GUGGGUUCAAAUCCCGC-CGCCUCCACCA Gamprb_SAR1 Colwe_psych GGGGCGG----AUCUAGGA--UUCGACAAGAUUCAU-----GAAACUC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGAACGU------AGGCUUUUUGGAC-GGGGGUUCGAUUCCCCC-CCGCUCCACCA Colwe_psych Psalt_halop NNNNNNN----NNNNNNNN--NNNNNNGGAAUUCAA-----GAAGCCC-GAGGUGCAUGU + ACA-UGUAG----------------------UACCGACGGUCG------AGGCUUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Psalt_halop Psalt_halo2 GGGGCUG-----AUUAGGA--UUCGACGGAAUUCAA-----GAAGCCC-AAGGUGCAUGU + GCA-UGUAG----------------------UACCGACGGUCG------AGGCUUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Psalt_halo2 Psalt_atlan GGGGCUG----AUUUUGGA--UUCGACAAGAUUCUU-----GAGGCUU-UAGGUGCAUGC + AUAAGCA-UGUAG----------------------UACCGACGGUUA------ACGUUUUUUGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Psalt_atlan Shewa_oneid GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC + GCA-UGUAG----------------------CGCCUUGGAUGU------AGGUUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_oneid Shewa_putre GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC + GCA-UGUAG----------------------UGCCUUGGAUGU------AGGUGUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_putre Shewa_spPV4 GGGGGCG----AUUCUGGA--UUCGACAAGAUUCAC-----GAAACCC-UAGGAGCAUGC + GCA-UGUAG----------------------CGCCGAGGAUGU------AGGCUUUUUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_spPV4 Shewa_denit GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-AAGGAGCAUGU + ACA-UGUAG----------------------CGCCGAGGAUGU------AGGCUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_denit Shewa_frigi GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-AAGGAGCAUGU + ACA-UGUAG----------------------UGCCGAGGAUGU------AGGCUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_frigi Shewa_amazo GGGGGCG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACUC-CGGGAGCAUGC + GCA-UGUAG----------------------CGCCUUGAGCGU------AGGUUUUUCGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_amazo Shewa_balti GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC + GCA-UGUAG----------------------UGCCUUGGAUGU------AGGUGUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_balti Shew_SAR1_1 GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC + GCA-UGUAG----------------------CGCCUUGGAUGU------AGGUUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shew_SAR1_1 Shewan_ANA3 GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC + GCA-UGUAG----------------------CGCCUUGGAUGU------AGGUUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewan_ANA3 Uncult_WW11 NNNNNNN----NNNNNNNN--NNNNACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC + GCA-UGUAG----------------------UGCCUUGGAUGU------AGGUGUUCUGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_WW11 Idiom_loihi GGGGCUG-----AUCUGGA--UUCGACGGGAUACAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------GACCGAGGAUGU------AGGUAUUGCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Idiom_loihi Vibrionales Phobm_phosp NNNNNNN----NNNNNNNN--NNNNNNAGGAUCACG-----AAGGCUU-GUGGAGCAUGU + ACA-UGUAG----------------------CGCCAUCUGUUA-----GACUGAUUUUGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Phobm_phosp Phobm_profu GGGGCUG----AUUCAGGA--UUCGACAGGAUCAAG-----AAGGCUU-GUGGAGCAUGC + GCA-UGUAG----------------------CGCCUAUGGUUG-----GAUUGCUCUUGGAC-GCGGGUUCAAAUCCCGC-CAGCUCCACCA Phobm_profu Vibro_fisch GGGGCUG----AUUCAGGA--UUCGACGGGAAUUUU-----GAAACCC-GAGGAGCAUGU + ACA-UGUAG----------------------CGCCAACGGUGA------ACGAUUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Vibro_fisch Vibro_chole GGGGCUG----AUUCAGGA--UUCGACGGGAAUUUU-----GCAGUCU-GAGGUGCAUGC + GCA-UGUAG----------------------UACCAAAGAUGA------AUGGUUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Vibro_chole Vibro_chol2 NNNNNNN----NNNNNNNN--NNNNNNNNNNNNNNN-----NNNNNNN-NNNNNNNNNNN + GCA-UGUAG----------------------UACCAAAGAUGA------AUGGUUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Vibro_chol2 Vibro_sEx25 GGGGCUG----AUUUAGGA--UUCGACGGGAAUUCA-----GAAGUCU-GAGGUGCAUGC + GCA-UGUAG----------------------UACCAAUGAUGA------ACGGUUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Vibro_sEx25 Vibro_parah GGGGCUG----AUUUAGGA--UUCGACGGGAAUUCA-----GAAGUCU-GAGGUGCAUGC + GCA-UGUAG----------------------UACCAAUGAUGA------AAGGUUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Vibro_parah Vibro_vulni GGGGCUG----AUUUAGGA--UUCGACGGGAAUUUU-----GCAGUCU-GAGGUGCAUGC + GCA-UGUAG----------------------UACCAAUGAUGA------AUGGUUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Vibro_vulni Aeromonadales Aermo_hydr1 GGGGCUG----AUUCUGGA--UUCGACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCAAGGAUGU------AGUAAUUUUGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Aermo_hydr1 Aermo_hydr2 GGGGCUG----AUUCUGGA--UUCGACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCAAGGAUGU------AGUAAUUUUGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Aermo_hydr2 Aermo_salmo NNNNNNN----NNNNNNNN--NNNNNNAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Aermo_salmo Uncult_VLW3 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW3 Uncul_VLS13 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_VLS13 Uncultu_WW9 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW9 Uncult_WW10 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_WW10 Uncult_VLW5 NNNNNNN----NNNNNNNN--NNNNGCAAGAUUCAC-----GAAA-CC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW5 Uncult_VLW6 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW6 Uncult_RCA4 NNNNNNN----NNNNNNNN--NNNNACGGGACACUC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACUGAGGAUGU------AGGUUUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_RCA4 Uncult_RCA7 NNNNNNN----NNNNNNNN--NNNNACGGGACACUC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACUGAGGAUGU------AGGUUUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_RCA7 Uncult_LEM1 NNNNNNN----NNNNNNNN--NNNNACGGGACACUC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACUGAGGAUGU------AGGUUUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_LEM1 Uncult_LEM2 NNNNNNN----NNNNNNNN--NNNNACGGUACACUA-----GAAAACC-AAGGUGCAUAC + GCA-UGUAG----------------------UACUGAGGAUGU------AGUAUUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_LEM2 Enterobacteriales Wiggl_gloss GGGGCUG----AUUAUGGA--UUCGACGAAAUAAAC-----AAAACUA-AAGAUGCAUGU + ACA-UGUAG----------------------UAUCAAUAGAAU------UGAAGUUUCGGAC-GCGGGUUCAAAUCCCGC-CAGCUCCAuau Wiggl_gloss Bloch_flori GGGGCUG----AUUUAGGU--UUCGACUGAAUGUCU-----UUGUGUUUGCAGUGCAUGU + ACA-UGUAG---------------------UAUCUGGA-AAAUAU----AAGAAUUCUGGAC-GCGGGUUCGAAUCCCGC-CAGCUCCAuuu Bloch_flori Bloch_penns GGGGCUG----AUUUUGGA--UUCGACGGAGUAUCU-----UGUUAUUUAAAGUGCAUGC + GCA-UGUAG---------------------GUUACUAAAAAUAAA----AAGAAUUCUGGAC-GCGGGUUCGAACCCCGC-CAGCUCCACCA Bloch_penns Uncul_aphi1 GGGGCUG----AUUCUGGA--UUCGACGGGAUAAGC-----AAAGCCC-AAGGUGCAUGC + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_aphi1 Uncul_aphi2 GGGGCUG----UUUUUGGA--UUUGACAAAAUUAUC-----AACAGAGUAAAGUGCAUGC + NNN-NNNNN----------------------NNNNNNNNNNNN-NNNNNNN-NN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Uncul_aphi2 Buchn_aphi1 GGGGCUG----UUUUUGGA--UUUGACAAAAUUAUC-----AACAAAGUAAAGUGCAUGC + GCA-UGUAG----------------------GGCUUUAUUAGU------AGAAAUUUUGGAC-GCGGGUUCGAAUCCCGC-CAGCUCCAaaa Buchn_aphi1 Buchn_aphi2 GGGGCUG----UUUUUGGA--UUCGACAAAGUUAUC-----AAAAAAGUAAAGUGCAUGC + GCA-UGUAG---------------------UAUCUUUAUUUAU------AGAAAUUUUGGAC-GCGGGUUCAAAUCCCGC-CAGCUCCAaaa Buchn_aphi2 Buchn_aphi3 GGGGCUG----AUAUUGGA--UUUGACAAAAUUAUU-----GAAAACU-GAUGUGCAUGC + GCA-UGUAG---------------------UAUCUGAAGUCGU------AAAAAUUUUGGAC-GCGGGUUCGAAUCCCGC-CAGCUCCAaaa Buchn_aphi3 Phorh_asymb GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCAAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Phorh_asymb Phorh_lumin GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCAAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Phorh_lumin Shige_dyse1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGACGU------AGGAAUUCCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_dyse1 Shige_dyse2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGACGU------AGGAAUUCCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_dyse2 Shige_boydi GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGACGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_boydi Shige_flexn GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_flexn Shige_sonne GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_sonne Esche_coli1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli1 Esche_coli2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGAAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli2 Esche_coli3 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGACGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli3 Esche_coli4 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli4 Entbr_cloac NNNNNNN----NNNNNNNN--NNNNNNGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGAAAUUUCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Entbr_cloac Entbr_aerog NNNNNNN----NNNNNNNN--NNNNNNGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Entbr_aerog Entbr_sakaz GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Entbr_sakaz Provi_rettg NNNNNNN----NNNNNNNN--NNNNNNGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGAAAUUUCNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Provi_rettg Serra_marc1 NNNNNNN----NNNNNNNN--NNNNNNGGGAUUUGC-----GAAGCCC-UAGGAGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Serra_marc1 Serra_marc2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAGCCC-UAGGAGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Serra_marc2 Panto_stewa GGGGCUG----AUUCUGGA--UUCGACGGGAUU-GU-----GAAGCCU-UAGGAGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Panto_stewa Prots_mirab GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGCGGAUGU------AGAAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Prots_mirab Prots_vulga NNNNNNN----NNNNNNNN--NNNNNNGGAAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGCGGAUGU------AGGAAUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Prots_vulga Klebs_pneum GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Klebs_pneum Klebs_aerog NNNNNNN----NNNNNNNN--NNNNNNGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Klebs_aerog Erwin_carot GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----AAAGCCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGACGGUAG------AGUAGUUCCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Erwin_carot Erwin_amylo GGGGCUG----AUUCUGGA--UUCGACAGGAUUUGC-----AAAGCCC-UAGGAGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUCUGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Erwin_amylo Erwin_chrys GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGACGGUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Erwin_chrys Salmo_bongo GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_bongo Salmo_ente1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente1 Salmo_ente2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente2 Salmo_ente3 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente3 Salmo_ente4 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Salmo_ente4 Salmo_ente5 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUCC----------------------UUCCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente5 Salmo_ente6 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente6 Citbr_roden GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Citbr_roden Uncult_RCA1 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGCAAUUUCGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_RCA1 Uncult_VLS1 NNNNNNN----NNNNNNNN--NNNNACAGGAUUUGC-----AAAGCCC-UAGGAGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUCUGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS1 Uncult_VLS3 NNNNNNN----NNNNNNNN--NNNNACAGGAUUUGC-----AAAGCCC-UAGGAGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUCUG-AC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS3 Uncult_VLS4 NNNNNNN----NNNNNNNN--NNNNACAGGAUUUGC-----AAAGCCC-UAGGAGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS4 Uncultu_WW1 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW1 Uncult_RCA2 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_RCA2 Uncultu_WW2 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW2 Uncultu_WW3 NNNNNNN----NNNNNNNN--NNNNACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW3 Uncultu_QL1 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GUGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_QL1 Uncultu_WW4 NNNNNNN----NNNNNNNN--NNNNACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW4 Uncult_VLS6 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGAUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS6 Uncultu_FS2 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_FS2 Uncultu_WW5 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW5 Uncultu_WW6 NNNNNNN----NNNNNNNN--NNNNACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------CGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW6 Uncult_VLW1 NNNNNNN----NNNNNNNN--NNNNACGGGAAUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW1 Uncult_VLS7 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS7 Uncult_VLS8 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS8 Uncult_VLS9 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAGCCC-UAGGAGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS9 Uncult_VLW2 NNNNNNN----NNNNNNNN--NNNNACGGGAUU-GU-----GAAGCCU-UAGGAGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW2 Uncultu_WW7 NNNNNNN----NNNNNNNN--NNNNACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW7 Uncultu_WW8 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW8 Yersi_pesti GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_pesti Yersi_frede GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UACCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_frede Yersi_pseud GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_pseud Yersi_enter GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGACGGCGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_enter Yersi_inmed GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGACGGCGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_inmed Yersi_molla GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGACGGCGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_molla Yersi_berco GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC + GCA-UGUAG----------------------UGCCGACGGCGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_berco Uncul_weevi GGGGCUG----AUCCUGGA--UUCGACGGGAUUUGU-----GAAACUC-AAGGUGCAUGC + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_weevi Pasteurellales Mannh_haemo GGGGCUG----AUUUUGGA--UUCGACGGGAUUGGC-----GAAGCCC-AAGGUGCAUGU + ACA-UGUAG----------------------UACUGAAGGUAG------AGAAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Mannh_haemo Mannh_succi GGGGCUG----AUUCUGGA--UUCGACGGGAUUGGC-----GAAGCCC-AAGGUGCACGU + ACG-UGUAG----------------------UGCUGAAGGUAG------AGUAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Mannh_succi Haemp_ducre GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGUCC-AAGGUGCACGU + ACG-UGUAG----------------------UACUGAAGAUAG------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Haemp_ducre Haemp_ducr2 NNNNNNN----NNNNNNNN--NNNNACGGGAUUAGC-----GAAGUCC-AAGGUGCACGU + ACG-UGUAG----------------------UACUGAAGAUAG------AGUAAUUUCGGAC-CCGGGUUCGACUCNNNN-NNNNNNNNNNN Haemp_ducr2 Haemp_infl1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU + ACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl1 Haemp_infl2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU + ACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl2 Haemp_infl3 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----AAAGCCC-AAGGUGCACGU + ACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl3 Haemp_infl4 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU + ACG-UGUAG----------------------UGCUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl4 Haemp_somnu GGGGCUG----AUUUUGGA--UUCGACGGAAUUAGC-----GAAGCCC-AAGGUGCACGU + ACG-UGUAG----------------------GACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_somnu Pasta_multo GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU + ACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Pasta_multo Actbl_actin GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-GAAGUGCACGU + ACG-UGUAG----------------------UGCUAACGGCAG------AGGAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Actbl_actin Actbl_succi GGGGCUG----AUUCUGGA--UUCGACGGGAUUGGC-----GAAGCCC-AAGGUGCACGU + ACG-UGUAG----------------------UGCUGAAGGUAG------AGUAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Actbl_succi Actbl_pleu1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGUCC-AAGGUGCACGU + ACG-UGUAG----------------------UGCUGAAGAUGG------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Actbl_pleu1 Actbl_pleu2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGUCC-AAGGUGCACGU + ACG-UGUAG----------------------UGCUGAAGAUGG------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Actbl_pleu2 ALPHA-PROTEOBACTERIA Mitochondria Recli_amer1 GGGGAUG----UUUUUAGU-AUUCGACAUAGUGGAAUUUAUUUGUGGAAUUUUUAAAUUU + GUUAAAUAAGUAAAUAAAAAAAAUAAAAUUUAAAUUAUUUUUUUAUAAGAAUGACUAUGGAA-CCGAGGGCGGAUCUCGG-CAUCUCCAuaa Recli_amer1 Recli_amer2 GGGGAUG----UUUUUAGG-AUUCGACAUAGUAAUAUA********************** + **********************************************UAUAUUAACUAUGGAC-CCGAGGGCAGUUCUCGG-CAUCUCCAuuu Recli_amer2 Recli_amer3 GGGGAUG----UUUUUAGA-AUUCGACAUAGUACAAUAUUAUGAGA************** + *******************************************UUUCGUAGUAACUAUGGAC-CCGAGGGCAGUUCUCGG-CAUCUCCAucu Recli_amer3 Secul_ecuad GGGAAUGAUAUAUACUAGA-GAUCGACAUUCAAAAAUGUAACCAAACAUAAAAAA***** + *************************************UUUUUAGACAAUCUAACGAAUGGAC-CCAUGGGCAGUUCAUGG-CAUUCCCAgua Secul_ecuad Histi_aroid GGGGGUG----UUAAUAA--AUUCGACAUAGUAGC************************* + **************************************************GCUACUAUGGAC-CCAUGGGUGGUUCAUGG-CAUUCCCAggc Histi_aroid Jakob_liber GGGGAUG-----AAUUAGU--UUAGAUAUUUAAGUAAUCCAUGAAAAUUCAUCA------ + -----------------------------------GAAUUUUGUAAUAUUGCUUAGAUAAAA-CCAUGGGCAGUACAUGG-CAUCUCCAcca Jakob_liber Caulobacterales Caulb_cresc GGGGCCG------AUCAGC--AUCGACAGACGUG------UAAAGGUGUCUGCUUUCUCU + GGG-GAUAA----------------------ACGCGCACGUAA-----UAAGCGGACUGGAC-CCGGGUGCGAUUCCCGG-CGGCUCCACCA Caulb_cresc Rhodobacterales Hyphm_neptu GGGGCCG-----AAAUAGU--GUCGACGGACGUG------UAAAGACGA-GGCUUUCGCU + GGC-GAUAA----------------------ACGCGCGUGUAA-----UAAGCGGCUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Hyphm_neptu Parcc_denit GGGGCCG-----AAACAGG--AUCGACGAACGUC------UAAAGCUGUUUGCUUUGUCU + GGA-CAUAA----------------------ACGCGCAGGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Parcc_denit Rhobr_sphae GGGGCCG-----AAACAGG--AUCGACGAACGUC------UAAAGGGGUUGGCUUUGUCC + GGA-CAUAA----------------------ACGCGCUCGUCA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Rhobr_sphae Uncul_bone2 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNN + NNN-NNNNN----------------------NNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNN Uncul_bone2 Jannas_CCS1 GGGGUCG-----AAAUAGG--AUCGACGAACGUC------UAAAGGGGUUAGCUUUGUCC + GGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGACUCCACCA Jannas_CCS1 Uncul_whal2 GGGGUCG-----AAAUAGG--AUCGACGGACGUC------UAAAGAUGUUUGCUUUUGCU + GGU-GAUAA----------------------ACGCGCAUGUAA-----UAAACGGAUCGGAC-CCGGGGGCGGUACCCGG-CGACUCCACCA Uncul_whal2 Silic_pomer GGGGCCG-----AAACAGG--AUCGACGGACGUC------UAAAGGGGUUAGCUUUGUCU + GGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGUUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Silic_pomer Silic_TM104 GGGGCCG-----AAAUAGG--AUCGACGGACGUC------UAAAGGGGUUAGCUUUGUCU + GGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Silic_TM104 Rhizobiales Agrbm_tume1 GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU + GGC-GAUAA---------------------ACGGUCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_tume1 Agrbm_tume2 GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU + GGC-GAUAA---------------------ACGGUCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_tume2 Agrbm_vitis GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU + GGC-AAUAA---------------------ACGGUCGGUGAAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_vitis Rhizm_legum GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-UCUUUUUGCU + GGC-GAUAA---------------------AUGAGCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Rhizm_legum Uncul_whal6 GGGGGCG-----AAACAGG--AUCGACGAGGGUG------UAAAGAGCG-ACUUUUUGUU + GAC-AAUAA---------------------ACGAGCGUUGCAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal6 Sinor_melil GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-ACUUUUUGCU + GGC-AAUAA---------------------ACGGGCGAUGCAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Sinor_melil Mesrhz_loti GGGGGCG-----AAAUAGG--AUCGACGAAGGUG------UAAAGAUCGUACUU-UUGCC + GGC-GAUAA---------------------AUGGGCGAUGAAA-----UAAGCCGUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Mesrhz_loti Mesrhz_bnc1 GGGGGCG-----AAAUAGG--AUCGACGAGGGUG------UAAAGAUCGGACUU-UCGCU + GGC-GAUAA---------------------ACGGACGAUGCAA-----UAAGCCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Mesrhz_bnc1 Uncul_whal5 GGGGGCG-----AAAUAGG--AUCGACGAGGGUG------UAAAGGAUC-UUCUUUUGCU + GGC-GAUAA---------------------ACUGAUUUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal5 Uncul_whal4 GGGGCCG-----AAACAGG--AUCGACGGAUGGG------UAAAGGAGACUGCUUUUGCC + GGC-GAUAA---------------------ACGCG-CUCGUAA-----UAACCAGACCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Uncul_whal4 Barto_hense GGGGGCG-----AAACAGG--AUCGACAAAAGUG------UAAAGAUUG-CUCUUUUACU + GGU-AAUAA---------------------AUGGACAAUGAAA-----UAAGCUUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Barto_hense Barto_quint GGGGGCG-----AAAUAGG--AUCGACAAGGGUG------UAAAGAUUG-CUCUUUUACU + GGU-AAUAA---------------------AUGGACAAUGAAA-----UAAACUCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Barto_quint Bruce_abort GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU + GGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Bruce_abort Bruce_melit GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU + GGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Bruce_melit Brucel_suis GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU + GGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Brucel_suis Rhops_palu1 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC + GGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCc Rhops_palu1 Rhops_palu2 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-UGCUUUUUCC + GGA-AAUAA---------------------AUGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCc Rhops_palu2 Rhops_palu3 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCG-AGCUUUUGUC + GAC-AAUAA---------------------ACCGCCGUCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Rhops_palu3 Rhops_palu4 GGGGGCG-----AAACAGG--AUCGAUGGCCGCGA-----AGAAGUGUU-GAAUUGUUCC + GGC-GCUGA---------------------AACUCAACGCGG-------ACUGCGGGCAGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCc Rhops_palu4 Rhops_palu5 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCU-UGCUUUUUCU + GGA-AAUAA---------------------AUGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Rhops_palu5 Brdrz_japon GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCG-UGCUUUUUCC + GGA-AAUAA---------------------ACGGUCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Brdrz_japon Nitbr_hambu GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCU + GGA-AAUAA---------------------ACGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_hambu Nitbr_winog GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC + GGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_winog Nitbr_Nb311 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC + GGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_Nb311 Uncul_farm1 GGGGCCG-----AAACAGG--AUCGACGAGGGCG------UAAAAGGCG-CGCUUUUGCC + GGC-GAUAA---------------------ACGGCCGUCGUAA-----UAAACCUUUCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCc Uncul_farm1 Mebrm_extor GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGUG-AACUUUCGCU + GGC-GAUAA---------------------ACGUUCUUCGAAA-----UAAACCUAUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCc Mebrm_extor Rhodospirillales Magsp_magn1 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGGG-AGCUUUCGCU + GGC-GAUAA---------------------ACGUUCUUCGCAA-----UAAACCUAUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Magsp_magn1 Magsp_magn2 GGGGGCG-----AAAUAGG--AUCGACGUGCGCAG-----UAAAGGUCU-GGUUUGCGUU + GAC-GCUAA---------------------ACGCCACACGGAA-----UAGACGUUACGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Magsp_magn2 Alprot_SAR1 GGGGGUG-----AUAUAGG--AUCGACGAAUGCU------UAAAGGUAA-GUUUUUCUCU + AGG-GAUAA---------------------ACGGCUUGCGUAA-----UACCCAUUACGGAC-CCGGGGGCGGUACCCGG-CACCUCCACCA Alprot_SAR1 Uncul_whal3 GGGGGCG-----AAAUAGG--AUCGACGCGUGUAA-----UAAAGGCUU-GGUUUGUGCU + GGU-GCUAA---------------------ACGCCAAGCGGAA-----UAAGCACAGCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal3 Rhspi_rubru GGGGGCG-----AAAUAGG--AUCGACACGCGUGG-----UAAAGAUAA-AGGUUGUGUU + GAC-GCUAA---------------------ACCCUUUAUGGAA-----UAAGCGUUGUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Rhspi_rubru Gluco_oxyda GGGGACG-----AAACAGG--CUCGACACGCAUGG-----UAAAGACUU-AUCUUUUGCC + GGC-GAUAA---------------------ACGGUAAGUGAAA-----UAAGUGUUGUGGAC-CCGGGGGCAGUGCCCGG-CGUCUCCACCA Gluco_oxyda Sphingomonadales Nsphg_aroma GGGGCCG-----AACUAGG--AUCGACGUGUGUUG-----AAAAGCGUU-GUU-UUCACC + GGU-GAUAA---------------------ACUGCGGCGUGCA----AUAGGCACAGCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Nsphg_aroma Sphpx_alask GGGGCCG-----AACCAGG--AUCGACGUGUGUUC-----AAAGACGAU-GCU-UUCUUC + GAG-GAUAA---------------------AUGGUGUCGUGGA----AUAGACACAGCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Sphpx_alask Eryba_litor GGGGCCG-----AACCAGG--AUCGACGUGUGUUG-----AAAGGCAUU-GUU-UUCACC + GGU-GAUAA---------------------ACUGCGGUGUGUA----AUAGACGCAACGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Eryba_litor Uncul_farm4 GGGGGCG-----AAAUAGG--AUCGACGAGUGCAG-----UAAAGGCCU-GGUUGCCGAU + GUC-GGUAG---------------------AAUGUCGGGUGGA----AUAAGCAUUUCGGACCCGGGGGGCAGUACCCCGGCGCCUCCACCA Uncul_farm4 Uncul_farm5 GGGGGCG-----AAAUAGG--AUCGACGAGUGCAA-----UAAAGACGC-GGUUGCCGAU + GUC-GGUAG---------------------ACUGUCGCGUGGA----AUAAACACUUCGGACCCGGGGGGCAGUACCCCGGCGCCUCCACCA Uncul_farm5 Zymom_mobil GGGGGCG-----AAACAGG--AUCGACGUGUGUAG-----UAAAGACUU-GAUUGCCAUC + GAU-GGUAG---------------------ACUGUUAAGUGAA----AUAGACUCGACGGACCCGGAGGGCAGUACUCCGGCGCCUCCACCA Zymom_mobil Sphin_elode GGGGCCG-----AACCAGG--AUCGACGUGUAUUG-----AAAAGCGCU-GUC-UUCGCU + GGC-GAUAA---------------------ACAAUGGCGUAUA----AUAGAUGCAGCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Sphin_elode Rickettsiales Ehrli_chaff GGGGAUG-----AAACAGG--AUCGACAUGCAUAG-----UAAAGGGGAUAGUUUUUGCU + GGC-AAUAA---------------------AGGCAUCUUAAAA-----UAGAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACuu Ehrli_chaff Ehrli_rumi1 GGGGAUG-----AAACAGG--CUCGACAUGCAUAG-----UAAAGGGGAUAGCUUUUGCU + GGC-AAUAA---------------------AUGCAUCUUAGAA-----UAAAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Ehrli_rumi1 Ehrli_rumi2 GGGGAUG-----AAACAGG--CUCGACAUGCAUAG-----UAAAGGGGAUAGCUUUUGCU + GGC-AAUAA---------------------AUGCAUCUUAGAA-----UAAAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Ehrli_rumi2 Ehrli_canis GGGGGUG-----AAACAGG--AUCGACAUGCAUAG-----UAAAGGGGAUAGUUUUUGCC + GGC-AAUAA---------------------AGGCAUCUUAAAA-----UAGAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACuu Ehrli_canis Anapl_phago GGGGAUG-----AGACAGG--UUAGACAGGCGUAG-----UAAAGAAGCUGGCUGUUGCU + GGC-AAUAA---------------------AAGUUACUUGGAA-----UAGACGUUUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACgu Anapl_phago Anapl_margi GGGGAUG-----AAACAGG--AUAGACAGACGCAA-----UAAAGAGGACGGCGUUUGCU + GGC-AAUAA---------------------AGGCCUCUUGGAA-----UAGGCGUUUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Anapl_margi Neori_senne GGGGGUG-----AUUUAGU--UUCGACAGGUAU-------UAAAGGCUA-AACUUUUGUU + GAC-AAUAA--------------------AUGGUUUUUCGUAA-----UAGGUAUCUUGGAC-CCGAAGGCGGAGUUCGG-CACCUCCACCg Neori_senne Wolbachia_1 GGGGACG-----AAUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU + AGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGUCUCCACCA Wolbachia_1 Wolbachia_2 GGGGGCG-----AAUAAGA--AUCGACAUGCAUAG-----UAAAGAUGG-UAACUUUGCU + GGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_2 Wolbachia_3 GGGGGCG-----AGUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU + GGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_3 Wolbachia_4 GGGGGCG-----AUUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU + AGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_4 Ricke_prowa GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAAGU-UGCUUUUACU + AGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_prowa Ricke_typhi GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAAAU-UGCUUUUACU + AGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_typhi Ricke_akari GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU + AGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_akari Ricke_felis GGGGGCG-----AAAUAGG--AUCGACGUACCUAA-----UAAAAAGAU-UGCUUUUACU + AGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_felis Ricke_ricke GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU + AGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_ricke Ricke_cono1 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU + AGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_cono1 Ricke_cono2 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU + NNN-NNNNN---------------------NNNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNCCA Ricke_cono2 Ricke_cono3 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGUU-UGCUUUUACU + NNN-NNNNN---------------------NNNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNCCA Ricke_cono3 Ricke_sibir GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU + AGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_sibir BETA-PROTEOBACTERIA unclassified Betaproteobacteria Tremb_prin1 GGGGAUG-----ACAGGGA--UUCGACACGGGGC-------AAGGGAUGGGGUGCCAUGC + GCA-UGUUG----------------------UGCACCCCACA------CCUCCCUGCUGGAC-GUGGGUUCAAUUCCCAC-CAUCUCCAggc Tremb_prin1 Tremb_prin2 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC + GCA-UGUGG---------------------UCGCACCCCACA-----CCCUCCCUGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin2 Tremb_prin3 NNNNNNN-----NNNNNNN--NNNNNNACGGGGU-------AAGGGUUGGGGUGCCAUGC + GCA-UGUCG----------------------AGCAGUCCACC------CAACCCCGAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin3 Tremb_prin4 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC + GCA-UGUUG----------------------UGCACCCCCCA----CACCUCCCUGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin4 Tremb_prin5 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC + GCA-UGUUG----------------------UGCACCCCACA------CCUCUCCGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin5 Tremb_prin6 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC + GCA-UGUUG----------------------UGCACCCCAUC------CCUCUCCGCUGGAA-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin6 Neisseriales Neiss_gono1 NNNNNNN----NNNNNNNN--NNNNNNGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC + GUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Neiss_gono1 Neiss_gono2 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC + GUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_gono2 Neiss_lacta GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC + GUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_lacta Neiss_meni1 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC + GUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni1 Neiss_meni2 GGGGGCG----ACCUUGGU--UUCGACGAGGGUUGC-----GAAGCAGAUGCGGGCAUAC + GUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni2 Neiss_meni3 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC + GUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni3 Chrbm_viol1 NNNNNNN----NNNNNNNN--NNNNNCGGGGGUUGC-----GAAGCAGAUGAGGGCAUAC + GUA-UGUAG----------------------AACUCACUGUAG------AGGACUUUCGGAC-GCGGGUUCAACUCCCNN-NNNNNNNNNNN Chrbm_viol1 Chrbm_viol2 GGGGGCG----ACC-UGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGAGGGCAUAC + GUA-UGUAG----------------------AACUCACUGUAG------AGGACUUUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Chrbm_viol2 Nitrosomonadales Uncultu_U02 NNNNNNN-----NNNNNNN--NNNNNNGUGGAUUGC-----AAAGCUAUCGAGGGCGUGU + ACA-CGUAG----------------------AACUUGUAGUGG------AGGAUUUGCGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_U02 Nisom_europ GGGGGCG----AUC-CGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC + GUA-UGUAG----------------------AACUGUCUGUAG------AGGACUUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Nisom_europ Nisom_cryot NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC + GUA-UGUAG----------------------AACUGUCUGUAG------AGGACUUGCGGAC-GCGGGUUCAACUCCCNN-NNNNNNNNNNN Nisom_cryot Nissp_multf GGGGGCG-----ACUUGGC--UUCGACGUGGGUUGC-----AAAACAGAGCAGGGCAUAC + GUA-UGUAG----------------------AACUGCCUGUAG------AGGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Nissp_multf Uncultu_U04 NNNNNNN----NNNNNNNN--NNNNNNGUGGGUUGC-----AAAGCAGUGCAGGGCAUAC + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_U04 Methylophilales Mebcl_glyco NNNNNNN----NNNNNNNN--NNNNNCGGGGGUUGC-----AAAGCAGCGCAGGGCAUAC + GUA-UGUAG----------------------AACUGUCUGUGG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCNN-NNNNNNNNNNN Mebcl_glyco Mebcl_flage GGGGCCG----ACC-AGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC + GUA-UGUAG----------------------AACUGUCUGUGG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Mebcl_flage Uncul_farm7 GGGGGUG----ACCCCGGU--UUCGACGUGGGUUAC----AAAGCAGUGCAGGGGCAUAC + GUA-UGUAG----------------------AACUGUCUGUAG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CACCUCCACCA Uncul_farm7 Uncul_poln1 GGGGACG----ACC-UGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_poln1 Rhodocyclales Azoarc_BH72 GGGGCCG----ACC-UGGC--UUCGACGUGGGUCGC-----GAAGCAGUGCAGUGCAUAC + GUA-UGUAG----------------------AGCUGUCUGUAG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Azoarc_BH72 Azoarc_EbN1 GGGGGUG----CAC-CGGU--UUCGACAGGGCGGGC------AAUGGUGAGCAGGCAACC + GGU-UGUAA--------------------UUCCGGCAACCCGG------AGACGUUCUGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACag Azoarc_EbN1 Decmo_aroma GGGGGUG----UAC-UGGU--CUCGACAGGGCGGAC------AAAGGUGCGCAGGCAACU + GGU-UGUAA--------------------UUCCGGCAAUCUGG------AGGCGUUCUGGAC-AGGGGUUCGAUUCCCCU-CACCUCCACCc Decmo_aroma Decmo_agita GGGGGUG----UAC-UGGC--UUCGACAGGGCGGGC------AAAGGUGCGCAGGCAACC + NNN-NNNNN--------------------NNNNNNNNNNNNGG------AGGCGUUCUGGAC-AGGGGUUCGAUUCCCCU-CACCUCCACCc Decmo_agita Azosp_oryza GGGGGUG----UAC-UGGC--UUCGACAGGGCGGGC------AAAGGUGCGCAGGCAACU + NNN-NNNNN--------------------NNNNNNNNNNNNGG------AGGCGUUCUGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACCu Azosp_oryza Hydrogenophilales Thibl_denit GGGGCCG----ACC-UGGC--UUCGACGUGGGUCGC-----AAAGCAGCGUAGGGCAUAC + GUA-UGUAG----------------------AACUGCCUGUAG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Thibl_denit Burkholderiales Comam_testo GGGGCCG----AUUCUGGA--UUCGACGUGGGUUCG-----GGACCGGUGCGGUGCAUGU + ACA-UGUAG----------------------AUCUGUCCGGCG------AAGGCUUACGGAC-GCGGGUUCAAUUCCCGC-CGGCUCCANNN Comam_testo Uncul_srat1 GGGGCUG-----UCCUGGU--UUCGACGUGGGUUCG-----GGACCGGUGUGGUGCAUGU + ACA-UGUAG----------------------AUCUGCCCGGCG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_srat1 Uncul_rice2 GGGGCUG----CCC-UGGU--UUCGACGUGGGUUCG-----GAAUCGGUGUGGUGCAUGU + ACA-UGUAG----------------------AUCUGCCCGAAG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_rice2 Uncul_aede1 GGGGCUG----CCC-UGGU--UUCGACGUGGGUUCG-----GAAUCGGCGUGGUGCAUGU + ACA-UGUAG----------------------AUCUGCCCGAUG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_aede1 Polmo_JS666 GGGGCUG----CAC-UGGU--UUCGACGCGGGUACG-----GACGCGCAGUGGGGCAUGC + GCA-UGUAG----------------------AACUACGCGAAG------AAGGCUUGCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Polmo_JS666 Varvx_parad NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUCG-----GAGUCGCAGCGGGGCAUGU + ACA-UGUAG----------------------AACUGCGCGAUG------AAGGCUUGCGGAC-GGGGGUUCAACUCCCNN-NNNNNNNNNNN Varvx_parad Hydro_palle NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUCG-----GACGCGCAGCAGGGCAUGU + ACA-UGUAG----------------------AACUGCUCGAAA------AAGGCUUGCGGAC-GGGGGUUCAACUCCCNN-NNNNNNNNNNN Hydro_palle Rubri_gelat GGGGCCG----ACC-UGGU--UUCGACGUGGGUGCG-----GAAUUGGAGUGGUGCAUGC + GCA-UGUAG----------------------AUCUACCUGAGG------AUGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Rubri_gelat Ralst_picke NNNNNNN----NNN-NNNN--NNNNNCGGGGGUUGC-----GAAGCAGCGGAGGGCAUAC + GUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCNN-NNNNNNNNNNN Ralst_picke Ralst_solan GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGUAGCGGGCAUAC + GUA-UGUAG----------------------AACGCUCUGUAG------AGGACUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_solan Cupri_necat NNNNNNN----NNN-NNNN--NNNNNCGUGGGUUAC-----AAAGCAGUGGAGGGCAUAC + GUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUACGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Cupri_necat Uncul_zebu1 GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGCGGAGGGCAUAC + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_zebu1 Ralst_eutro GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGUGGAGGGCAUAC + GUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_eutro Ralst_metal GGGGCCG----ACC-UGGU--UUCGACGUGGGUUAC-----AAAGCAGUGGAGGGCAUAC + GUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_metal Burkh_thail GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU + ACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_thail Burkh_pseud GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU + ACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_pseud Burkh_malle GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU + ACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_malle Burkh_fungo GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGC-----GAAGCGGCU-AGGGCAUGU + ACA-UGUAG----------------------AACUGGUCGUAG------AGUGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_fungo Burkh_cenoc GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU + ACA-UGUAG----------------------AACUAGUCGUGG------AGCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_cenoc Burkh_vietn GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU + ACA-UGUAG----------------------AACUAGUCGUGG------AGCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_vietn Burkh_sp383 GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU + ACA-UGUAG----------------------AACUAGUCGUGG------AGCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_sp383 Alcal_visco NNNNNNN-----NNNNNNN--NNNNNNGUGGGUCGC-----GAAACAACUCAGGGCAUGC + GCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Alcal_visco Uncul_root1 GGGGCCG----AUC-CGGA--UUCGACGUGGGUCGC-----GAAACAGUGCAGGGCAUGU + NNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_root1 Alcal_faeca NNNNNNN----NNN-NNNN--NNNNNCGGGGGUCAA-----GAAGCAGCACAGGGCGUGU + ACA-UGUAG----------------------AACUGUCUGUGG------ACGGCUUGCGGAC-GGGGGUUCGAUUCCCNN-NNNNNNNNNNN Alcal_faeca Uncul_humn2 NNNNNNN----NNN-NNNN--NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNN + GCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACaa Uncul_humn2 Borde_pertu GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGCUCAGGGCAUGC + GCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_pertu Borde_parap GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGCUCAGGGCAUGC + GCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_parap Borde_bronc GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGCUCAGGGCAUGC + GCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_bronc Borde_avium GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGUUCAGGGCAUGU + GCA-UGUAG----------------------AACUGACUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_avium OTHER PROTEOBACTERIA unclassified Proteobacteria Magcocc_MC1 GGGGGUG-----AACUGGC--UUCGACGGGGUGUGG-----AACGGUUAGCAAGGCGACU + GGU-CGUGA----------------------UUCCUUCUAGCUU--AAUACAUAUUUCGGAC-CGGGGUUCGACUCCCCG-CACCUCCACCA Magcocc_MC1 Uncult_HF10 GGGGGUG-----AACUGGC--UUCGACUUUGAAGCG-----AGCCUCUCA-GUAGCGAGC + -----------------------AAGCUGUUAGGU-----AGCUUAAAAGGAC-CGGGGUUCGACUCCCCG-CACCUCCACCA Uncult_HF10 Prbr_SAR1_1 GGGGGCG----ACU-UGGC--UUCGACAGCAGAUAC-----AAACCCUCA-AGUGCAUGU + ACA-UGUAG----------------------AUCUUGUGGCAG------AGUACUGAUGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Prbr_SAR1_1 Prbr_SAR1_2 GGGGGCG----UAUUAGGC--UUUGACGUCUACCAC-----GGAACCU-AAAGUGCAUAU + GUA-UGUAG----------------------AUACUAAGGGAA------AGUGAUGACGGAC-GUGGGUUCAAAUCCCGC-CGCCUCCACCA Prbr_SAR1_2 Prbr_SAR1_3 GGGGGCG-----AU-CGGU--UUCGACGAAAUAUGC-----AUCUUUCUAAAUGGCAUGC + GCG-UGUAG----------------------AUAUUUUUUUAG-----GUUCUAUCUCGGAC-GGGAGUUCGAUUCUCCC-CGCCUCCACaa Prbr_SAR1_3 Uncul_phako GGGGGCG-----ACCUGGC--UUCGACGGGGAGAGA------GAAUUCGAGAGCGCGUGC + GCA-CGUAG----------------------UGGUCUCGUAGGA-----CCUAUUCUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Uncul_phako Deltaproteobacteria Lawso_intra GGGGACG-----CACUGGU--UUCGACGGGGAUGUG------GAAACCAAAGUGGCAGGU + ACC-UGUAG----------------------AUACUUUGUGUGG-----AACUUUCUCGGAC-GCGGGUUCGAUUCCCGC-CGUCUCCACCA Lawso_intra Desvb_desu1 NNNNNNN-----NNNNNNN--NNNNNNGGGGACGUG------GAAGCCGUAGCGGCAGGU + ACC-UGUAG----------------------AUGCUUCGUGUGG-----AAUGUUCUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Desvb_desu1 Desvb_desu2 GGGGGCG-----CACUGGU--UUCGACGGGGAUAAA------GAAGCCGGAGUGGCAGGU + ACC-UGUAG----------------------AAGCUUCGAGUGG-----ACUGUUCUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Desvb_desu2 Desvb_vulga GGGGGCG-----CACUGGU--UUCGACGGGGACGUA------GAAGCCGGAGUUGCAGGC + GCC-UGUAG----------------------ACGCUUCGUGUGG-----AACAUUCUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Desvb_vulga Destl_pschr GGGGGCG-----AAACGGC--UUCGACGGGGAUGUA-----UAAGCUCUACGUUGCAUGU + ACA-UGUAG-----------------------AUACGAGAGGGG-----AGCAUUUGCGGAC-GCGGGUUCGACUCCCGC-CGCCUCCACCA Destl_pschr Uncul_cion1 GGGGGUG-----AUUCGGA--UUCGACGACGGUAUC------GAACCCUUAGGUGCAUGC + GCA-UGUAA-----------------------AGCCGAAGGCUG-----AGAGCUGGCGGAC-GCGGGUUCGACUCCCGC-CGCCUCCACCA Uncul_cion1 Syntr_acidi GGGGGCG-----UUACGGU--UUCGACGGGGAUAGU-----UGAAGCUGUAGAAGCGUAC + GUA-CGUAG-----------------------AAACUGCAGUGG-----AAUAUUUUCGGAC-GCGGGUUCGACUCCCGC-CGCCUCCACCA Syntr_acidi Geobr_sulfu GGGGGUG-----UACAGGU--UUCGACGGGGAUAGG------AAGCUGAUGGUUGCAUGC + GCA-UGUAG----------------------ACGCCUUCGGUGU-----AUGAUCUUCGGAC-GCGGGUUCGACUCCCGC-CACCUCCACCA Geobr_sulfu Geobr_metal GGGGGUG-----UACAGGU--UUCGACGGGGAUAGG------AAACUAAAGGUUGCAUGC + GCA-UGUAG----------------------ACGCCUUCUGUGU-----AUGAUCUUCGGAC-GCGGGUUCGACUCCCGC-CACCUCCACCA Geobr_metal Desfm_aceto GGGGGCG-----CCAAGGU--UUCGACGGGGAUUG-------GAAGCUAAGGUUGCAUGU + ACA-UGUAG----------------------ACGCCUUAAGUGA-----AAGAUUUUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Desfm_aceto Bvora_marin GGGGGUG-----CCCUGGU--UUCGACGGGUUGCUA------GAAGUUUUGUGGGCGUGU + GCA-CGUAG----------------------UCCGCACUAUGGA-----AAUCAACUCGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACCA Bvora_marin Bdell_bacte GGGGGCG-----UACUGGC--UUCGACGUGGGUGCU------GAAGCAUAAGGAGCAUAC + GUA-UGUAG----------------------CGCCUUAUCGUGG-----AUCAUUUGCGGAC-GGGGGUUCAAUUCCCCC-CGCCUCCACCA Bdell_bacte Myxoc_xanth GGGGGCG-----ACCUGGU--UUCGACGGGGGCAUU------GAAGUUCGAGACGCGUGC + GCA-CGUAG----------------------GGUCGAAGAGCGG-----ACGGCUUUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACug Myxoc_xanth Epsilonproteobacteria Wolin_succi GGGGUCG-----ACUUGGA-UUUCGACGGGAGCUAA------AUAGCCUCGGUUGCAUGU + GCA-UGUAG-------------------------AGACUGGGGUGGGUUUGG-CUUUCGGAC-UGGGGUUCGAUUCCCCA-CGACUCCACCA Wolin_succi Campbr_lari GGGGACG-----ACUUGGC--UUCGACAGGAGUAGA------GUGGCCUUGGUGGCAUGU + GCA-UGUAG-----------------------AUGCCGUGGUUGUU----UUAUUUUUGGAC-AGGGGUUCAAUUCCCCU-CGUCUCCACCA Campbr_lari Campb_upsal GGGGACG-----ACCUGGC--UUCGACAGGAGUAGU------UUGACUAGGAUGGCAUAC + GUA-UGUAG-----------------------AGGUCUUUUUUGGG----CUAUUUUUGGAC-AGGGGUUCAAUUCCCCU-CGUCUCCACCA Campb_upsal Campb_fetus GGGGGUG-----ACUUGGC--UUCGACAGGAGUAGU------GGAGUCACGGCGGCAUGC + GCA-UGUAG-----------------------AGGCUAUGAAUCUA----UUAUUUUUGGAC-UGCAGUUCGAUCCUGCA-CACCUCCACCA Campb_fetus Campb_fetu2 NNNNNNN-----NNNNNNN--NNNNNNAGGAGUAAG------UCUGCUUAGAUGGCAUGU + GCA-UGUAG-----------------------AGGUCUUUGUGGGA----UUAUUUUUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Campb_fetu2 Campbl_coli GGGAGCG-----ACUUGGC--UUCGACAGGAGUAAG------UCUGCUUAGAUGGCAUGU + GCA-UGUAG-----------------------AGGUCUUUGUGGGA----UUAUUUUUGGAC-AGGGGUUCGAUUCCCCU-CGCUUCCACCA Campbl_coli Campb_coli2 NNNNNNN-----NNNNNNN--NNNNNNAGGAGUAAG------UCUGCUUAGAUGGCAUGU + ACA-UGUAG-----------------------AAGUCUUUGUGGGG----UUAUUUUUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Campb_coli2 Campb_jejun GGGAGCG-----ACUUGGC--UUCGACAGGAGUAAG------UCUGCUUAGAUGGCAUGU + GCA-UGUAG-----------------------AGGUCUUUGUGGGA----UUAUUUUUGGAC-AGGGGUUCGAUUCCCCU-CGCUUCCACCA Campb_jejun Helcb_pylo1 NNNNNNN-----NNNNNNN-NNNNNNNAGAUUUCUU------GUCGCGCAGAUAGCAUGC + GCAUUGUAG----------------------AAGUUUGUGUUU-AGGGCAAGAUUUUUGGAC-UGGGNNNNNNNNNNNNN-NNNNNNNNNNN Helcb_pylo1 Helcb_pylo2 GGGGCUG-----ACUUGGA-UUUCGACAGAUUUCUU------GUCGCACAGAUAGCAUGC + GCAUUGUAG----------------------AAGUUUGUGUUU-AGGGCAAGAUUUUUGGAC-UGGGGUUCGAUUCCCCA-CAGCUCCACCA Helcb_pylo2 Helcb_pylo3 GGGGCUG-----ACUUGGA-UUUCGACAGAUUUCUU------GUCGCACAGAUAGCAUGC + GCAUUGUAG----------------------AAGUUUGUGUUU-AGGACAAGAUUUUUGGAC-UGGGGUUCGAUUCCCCA-CAGCUCCACCA Helcb_pylo3 Helcb_muste GGGGCUG-----AUUUGGC-UUUCGACAGGAAUUGU------AUCGCUUGGAUUGCAUGU + GCA-UGUAG------------------------AGAUCCUUGU-AGAUAUAA-UUUUUGGAC-UGGGGUUCGAUCCCCCA-CAGCUCCACCA Helcb_muste Helcb_hepat GGGGCUG------AUUGGC-UUUCGACAGGAGCAAA-------GAGACUUAAGUGCAUGU + ACA-UGUAG------------------------AUUCUUAAGA-AGCUCAAG-CUUUUGGAC-UGGGGUUCAACUCCCCA-CAGCUCCACCA Helcb_hepat Helcb_ganma NNNNNNN-----NNNNNNN-NNNNNNNNNGAAUUAG------AUAGCUCUAGCUGCAUGC + GCA-UGUAU------------------------AUCGGCUGUUGUUGGUCUAGUUUUNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Helcb_ganma GRAM-POSITIVES FIRMICUTES: Clostridia Alkph_metal GGGGGCG-----UACUGGU--UUCGACGGGGGUUU------AGAGUCAUUAGUGGCGAGC + GCU-CGUAG-----------------------AAGCUGAUGGU----GAAGGGCCUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACCA Alkph_metal Clost_aceto GGGGGCG----CUUUUGGU--UUCGACGGGGAUGAU----GUUACGUUUGAGAAGCGAGU + ACU-CGGAG-----------------------AUGCUUAAAUG----AAACCAUUUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACua Clost_aceto Clost_perf1 GGGGGCG-----UUUUGGC--UUCGACGGGGGUAA-----GAUGGGUUUGAUAAGCGAGU + ACU-CGUAG-----------------------AAAGUCUUACU----GGUCUGCUUUCGGAC-ACGGGUUCGACACCCGU-CGCCUCCACCA Clost_perf1 Clost_perf2 GGGGGCG-----UUUUGGC--UUCGACGGGGGUAA-----GAUGGGUUUGAUAAGCGAGU + ACU-CGUAG-----------------------AAAGUCUUACU----GGUCUGCUUUCGGAC-ACGGGUUCGACACCCGU-CGCCUCCACCA Clost_perf2 Clost_perf3 NNNNNNN-----NNNNNNN--NNNNACGGGGGUAG-----GAUGGGUUUGAUAAGCGAGU + ACU-CGUAG-----------------------AAAGUCUUACU----GGUCUGCUUUCGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Clost_perf3 Clost_therm GGGGGCG-----UAUUGGU--UUCGACGGGAUUGU------UGAAGCUUGAGUAGCGGGU + ACC-CGGAG-----------------------AAGCUCUUGUG----GAUACGAUUUCGGAC-AGGGGUUCGACUCCCCU-CGCCUCCACCA Clost_therm Clost_botul GGGGGCG-----CAAUGGU--UUCGACGGGGGCAAA-----UUGCUCCUGGGAAGCGAGU + ACU-CGGAG-----------------------AUGCCCAGGGG----UUGCUGCUUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACCA Clost_botul Clost_tetan GGGGGCG----UAAAUGGU--UUCGACGGGGGCAAG-----UUGCUCCUGAGAAGCGAGU + ACU-CGGAG-----------------------AUGCUCAGGGG----UUACUGCUUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACCA Clost_tetan Clost_diffi GGGGGCG-----UAAAGGU--UUCGACGUGGGUUU------GGAACUUGAGGCUGCAUGU + GCA-UGUAG-----------------------AUGCAGCAAGG----AAAAGAUUUGCGGAC-AGGGGUUCGACUCCCCU-CGUCUCCACCA Clost_diffi Clost_diff2 GGGGGCG-----UAAAGGU--UUCGACGUGGGUUU------GGAACUUGAGGCUGCAUGU + GCA-UGUAG-----------------------AUGCAGCAAGG----AAAAGAUUUGCGGAC-AGGGGUUCGACUCCCCU-CGUCUCCACCA Clost_diff2 Rumin_albus GGGGAUG-----UAAAGGU--UUCGACGGGGGUCU------UGAAGGGCGAUAAGCGAGU + ACU-CGUAG-----------------------AAAUUCGCGUG----AAUGGGCUUUCGGAC-AGGAGUUCGAUUCUCCU-CAUCUCCACCA Rumin_albus Destb_hafni GGGGGUG-----CACUGGC--UUCGACGGGGGUCGC-----AAAAUCGCUUGGCGCAUGC + GCA-UGUAG-----------------------UGCCGGGGAUG-----GAGUGCCUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Destb_hafni Caldc_sacch GGGGGCG---UGUUUUGGAA-UUCGACGGGGGCAGU-----CGGAUUCCAAAUAGCGGGU + ACC-CGGAG-----------------------AAGUUUGGAGU----UCGAUGCCUUCGGAC-GGGGGUUCAAAUCCCCC-CGCCUCCACCA Caldc_sacch Crbth_hydro GGGGGCG-----UAAAGGG--UUCGACGGGGGAGCG----AAGGGCCGAAAGUAGCGAGG + CCU-CGGAG-----------------------AAGCUUUCGGU----UCUUGUCCUCCGGACGGUGGGUUCGAUUCCC-CCCGCCUCCACCA Crbth_hydro Helio_mobil NNNNNNN-----NNNNNNN--NNNNNNGGGGAACGU-----GUUUGCUUGGGAUGCGAGC + GCU-CGUAG-----------------------UGUCCUUUGUG----GGCAUUUCUUCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Helio_mobil Thana_tengc GGGGGUG-----UGUUGGU--UUCGACGGGGGCGG-----UCGAGGUAAAAGUAGCGAGC + GCU-CGGAG-----------------------AAGCUUUUACC----GGGACGCCUUCGGAC-CGGGGUUCGAAUCCCCG-CACCUCCACCA Thana_tengc Copth_prote GGGGGCG-----AAAAGGU--CUCGACGGCGAGUC------GGAGCCUUGAGCUGCAGGC + GCC-UGUAG-----------------------ACGCGAAAGGU----GGCGGCUCGUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Copth_prote Moore_therm GGGGGCG-----UAAUGGU--UUCGACGGGGGUAG-----CAUUGGCAGUAGUAGCCAGG + CCU-GGUAG-----------------------AAGCUACUGUG----GAUGUACCUUCGGAC-GGGGGUUCGACUCCCCC-CGCCUCCACCA Moore_therm FIRMICUTES: Mollicutes Mespl_floru GGGGAUG-----UCCUGGU--UUCGACAGGAUACUC-----UGGUCAUAUAAUAGCA-GU + AC--UGUAG-----------------------AAUUUAUAUGA----UUCGGUAUUUUGGAC-GUGGGUUCGAUUCCCAC-CAUCUCCACCA Mespl_floru Spipl_kunke GGGGAUG-----UUCCGGU--UUCGACAGGAAUGAU------CUACUAAUAUUGGCA-GU + AC--UGUAG-----------------------AAGAUAUUAGA----AUGUUAUUUGUGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCACCA Spipl_kunke Mycpl_capri GGGGAUG-----UCAUGGA--UUUGACAGGAUAUCU-----UUAGUACAUAUAAGCA-GU + AC--UGUAG-----------------------AAAGUAUGUAU----UAAUAUAUCUUGGAC-GCGAGUUCGAUUCUCGC-CAUCUCCACCA Mycpl_capri Mycpl_mycoi GGGGAUG-----UCAUGGA--UUUGACAGGAUAUAA-----CCAGUACAUAUAAGCA-GU + AC--UGUAG-----------------------AAAGUAUGUAU----UAGUGUAUCUUGGAC-GCGAGUUCGAUUCUCGC-CAUCUCCACCA Mycpl_mycoi Urepl_parvu GGGGAUG-----UCACGGU--UUCGACGUGACACAU------UAAUUUUUAAUUGCA-GU + AC--UGUAG-----------------------AUAUUAUUAAU-----UAUGUGUUGCGGAA-AGGGGUUCGACUCCCCU-CAUCUCCACCA Urepl_parvu Mycpl_pulmo GGGGAUG-----UAAUGGU--UUCGACAGGCAUUUA------UAACCUUAUAAUGCA-GU + AC--UGUAG-----------------------AUUUAUAAGCA---UUGUGAAUGUGUGGAC-CCGGGUUCGACUCCCGG-CAUUUCCACCA Mycpl_pulmo Mycpl_mobil GGGGGUG-----UAAUGGA--UUUGACAUGCAUAAG------GUUUAUUAGACUGCA-GU + AC--UGUAG-----------------------AUGUCUCUUAA----AUUUUAUGUGUGGAC-CCGGGUUCAACUCCCGG-CAUCUCCACCA Mycpl_mobil Uncul_toxo1 NNNNNNN-----NNNNNNC--UUCGACAUACAUAAA------AGGAUAUAAAUUGCA-GU + AC--UGUAG-----------------------UAAUUUAUAUU----UAAUUAUGUGUGGAC-CCSGGUUCAACUCCCGG-VAUCUCCACCA Uncul_toxo1 Uncul_toxo2 NNNNNNN-----NNNNNNC--UUCGACAUACAUAAA------AGGAUAUAAAUUGCA-GU + AC--UGUAG-----------------------UAAUUUAUAUU----UAAUAAUGUGUGGAC-CCGGGUUCAACUCCCGG-CAUCUCCACCA Uncul_toxo2 Uncul_humn4 NNNNNNN-----NNNNNGC--UUCGGCAUACAUAAA------AGGAUAUAAAUUGCA-GU + AC--UGUAG-----------------------UAAUUUAUAUU----UAAUUAUGUGUGGAC-CCGGGUUCAACUCCCGG-CAUCUCCACCA Uncul_humn4 Uncul_humn5 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNNNN------NNNNNNNNNNUUGCA-GU + NN--NNNNN-----------------------NNNNNNNNNNN----NNNNNNNNNNAGGCUUUUUNNNNNNNNNNNNNNNNNNNNNNNNNN Uncul_humn5 Uncul_humn6 GGGGGUG-----UACUGGC--UUCGACAUACAAA--------AGGAUAUAA-UUGCA-GU + AC--UGUUG-----------------------UAANNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_humn6 Mycpl_penet GGGGAUG-----UCACGGU--UUCGACAUGAAUGGUU---GAUCUUCAAAUGCAGCA-GG + GC--UGUAG-----------------------AUUUUGUCGCA----UUGCUAUUUGUGGAA-ACGGGUUCGACUCCCGU-CAUCUCCACCA Mycpl_penet Mycpl_arthr GGGGGUG-----UAAUGGC--UUCGACAGGCACUGG------AUUUAAUAAAUUGCA-GU + AC-UUGUAG-----------------------ACAUUUAUUAA----UGAAAGUGUGUGGAC-CGGGGUUCGAUUCCCCG-CAUCUCCACCA Mycpl_arthr Mycpl_genit GGGGAUG-----UUUUGGG--UUUGACAUAAUGCUGA----UAGACAAACAGUAGCA-UU + AA--UGUAG-----------------------AAGCUGUUUGU---UGUGUCCUUUAUGGAA-ACGGGUUCGAUUCCCGU-CAUCUCCACCA Mycpl_genit Mycpl_pneum GGGGAUG-----UAGAGGU--UUUGACAUAAUGUUGA----AAGGAAAACAGUUGCA-GU + AC--UGUAG-----------------------AAGCUGUUUUA---CCAAUCCUUUAUGGAA-ACGGGUUCGAUUCCCGU-CAUCUCCACCA Mycpl_pneum Mycpl_hyop1 GGGGGUG-----UUUUGGU--UUUGACAAUUAAAAAA-----AAUUUCUAAGAUGCA-GU + AC--UGUCG-----------------------ACUCUAUUAAU----UUUUUUUAUUUGGAU-CGGGGUUCGAUUCCCCG-CACCUCCACCA Mycpl_hyop1 Mycpl_hyop2 GGGGGUG-----UUUUGGU--UUUGACAAUUAAAAAA-----AAUUUCUAAGAUGCA-GU + AC--UGUCG-----------------------ACUCUAUUAAU----UUUUUUUAUUUGGAU-CGGGGUUCGAUUCCCCG-CACCUCCACCA Mycpl_hyop2 Mycpl_galli GGGGAUG-----UCAAGGC--UUCGACAUGAUUGAU------AAACUUAUUAGUUCA-GU + AC--UGUAA-------------------AUAAAACUAAUUUGC---UGAGUCGAUUGUGGAA-ACGGGUUCGAUUCCCGU-CAUCUCCACCA Mycpl_galli Phtpl_aste1 GGGGAUG-----UUUUGGA--UUUGCCAGGUAACGA--------AAUUUAUAUAGCAUAU + AU-AUGUAG-----------------------AAUAUAUAAAU---UAAAGUGAUUUUGUAC-AUGGGUUCGACUCCCAU-CAUCUCCACCA Phtpl_aste1 Phtpl_aste2 GGGGAUG-----UUUUGGA--UUUGCCAAGGUCAAC------GAAAUUUAUAUAGCAUAU + AU-AUGUAG-----------------------AAUAUAUAAAU---UAAAGUGAUUUUGCAC-AUGGGUUCGACUCCCAU-CAUCUCCACCA Phtpl_aste2 FIRMICUTES: Bacillales Paeni_larva GGGGGCG----UUUUUGGA--UUCGACGGGGAUAGUUC----GA-GCAUGGGUAGCGGGU + ACC-CGUAG-----------------------AAGCCUAUGUG----GCGUUAUCUUUGGAC-ACGGGUUCGACUCCCGU-CGCCUCCAuau Paeni_larva Paeni_macer NNNNNNN-----NNNNNNN--NNNNNNAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU + ACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUGUUUCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Paeni_macer Bacil_anthr GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU + ACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_anthr Bacil_thur1 NNNNNNN-----NNNNNNN--NNNNNNAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU + ACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Bacil_thur1 Bacil_thur2 GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU + ACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_thur2 Bacil_cere1 GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU + ACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_cere1 Bacil_cere2 GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU + ACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_cere2 Bacil_cere3 GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU + ACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_cere3 Bacil_megat NNNNNNN-----NNNNNNN--NNNNNNAGGG-UAGUUC----GA-GCUUAGGUUGCGAGU + ACU-CGUAG-----------------------ACGCUUAAGUG----GCCAUAUUUCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Bacil_megat Bacil_halod GGGGACG-----UUCUGGA--UUCGACAGGAAUAGGUC----GA-GCUUAAGUGGCGAGC + GCU-CGUAG-----------------------AAGCUUAAGUA---CUCGUUAUUUCUGGAC-GUGGGUUCGAUUCCCAC-CGUCUCCAuuu Bacil_halod Bacil_claus GGGGACG-----UUUUGGA--UUCGACAGGGAUAGGUC----GA-GCUUGCGUUGCGAGC + GCU-CGUAG-----------------------AAGCGUAAGUG----UCGUUAUCUCUGGAC-GUGGGUUCAAUUCCCAC-CGUCUCCAuau Bacil_claus Bacil_subti GGGGACG-----UUACGGA--UUCGACAGGGAUGGAUC----GA-GCUUGAGCUGCGAGC + GCU-CGUAG-----------------------ACGCUUAAGUA---AUCGAUGUUUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuac Bacil_subti Bacil_liche GGGGACG-----UUACGGA--UUCGACAGGGACGGAUC----GA-GCUUGAGCUGCGAGC + GCU-CGUAG-----------------------ACGCUGAAGCA---AUCGACGUUUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAucu Bacil_liche Geobl_stear GGGGACG-----AUCCGGA--UUCGACAGGGGUAGGUC----GA-GCUUAAGCGGCGAGC + GCU-CGUAG-----------------------AUGCUUAAGUG----GCGAUGCCUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuuu Geobl_stear Geobl_kaust GGGGACG-----AUCCGGA--UUCGACAGGGGUAGGUC----GA-GCUUAAGCGGCGAGC + GCU-CGUAG-----------------------AUGCUUAAGUG----GCGAUGCCUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuuu Geobl_kaust Exiguoba_sp GGGGACG-----UUACGGA--UUCGACGGGGGUAGUUC----GG-UCUUCUGUGGCGUGU + ACA-CGUAG-----------------------AAGCUUAAGUA---UACGAUGCCUUCGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuac Exiguoba_sp Ocebl_iheyi GGGGACG-----UUACGGA--UUCGACAGGGAUAGAUU----GA-GCUCAGGUUGCACGU + GCG-UGUAG-----------------------AAGCCUGAGUG----GCGAUAUCCUUGGAC-GAGGGUUCGACUCCCUC-CGUCUCCACCA Ocebl_iheyi Stapc_sapro NNNNNNN----NNNNNNNN--NNNNNNNNNGGUUCCAU----GA-GCUAGUUAAGCGUGU + GCA-CGUAG-----------------------AAGUGCUAGUA----UCAGAACCUCUGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Stapc_sapro Stapc_xylos NNNNNNN----NNNNNNNN--NNNNNNNNNGGUUCCAU----GA-GCUAGUUAAGCGUGU + GCA-CGUAG-----------------------AAGUGCUAGUA----UCAGAACCUCUGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Stapc_xylos Stapc_aure1 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUUUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure1 Stapc_aure2 GGGGACG----UUUCUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure2 Stapc_aure3 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure3 Stapc_aure4 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuua Stapc_aure4 Stapc_aure5 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuua Stapc_aure5 Stapc_aure6 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure6 Stapc_epid1 GGGGACG----UUCUUGGA--UUCGACAGGGGUCCCC-----GA-GCUUAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUUUGUA----UCAGGACCUCUGGAC-GCGGGUUCGAAUCCCGC-CGUCUCCAuua Stapc_epid1 Stapc_epid2 GGGGACG----UUCUUGGA--UUCGACAGGGGUCCCCC----GA-GCUUAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUUUGUA----UCAGGACCUCUGGAC-GCGGGUUCGAAUCCCGC-CGUCUCCAuua Stapc_epid2 Stapc_epid3 GGGGACG----UUCUUGGA--UUCGACAGGGGUCCCC-----GA-GCUUAUUAAGCGUGU + ACA-CGUAG-----------------------AAAGAUUUGUA----UCAGGACCUCUGGAC-GCGGGUUCGAAUCCCGC-CGUCUCCAuua Stapc_epid3 Lista_mono1 GGGGAUG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGAC-GUGGGUUCGACUCCCAC-CAUCUCCAuau Lista_mono1 Lista_mono2 GGGGAUG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGAC-GUGGGUUCGACUCCCAC-CAUCUCCAuau Lista_mono2 Lista_mono3 NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_mono3 Lista_inno1 NNNNNNN-----NNNNNNN--NNNNNNNNNGAUAGUUC----GA-GCUUGAUUUGCGAGU + GCU-CGUAG-----------------------AUAUUCAAGUG----CCGAUAUUUCUGGAC-GUNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_inno1 Lista_inno2 GGGGAUG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUCAAGUG----CCGAUAUUUCUGGAC-GUGGGUUCGACUCCCAC-CAUCUCCAuau Lista_inno2 Lista_inno3 GGGGAUG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGAC-GUGGGUUCGACUCCCAC-CAUCUCCAuau Lista_inno3 Lista_welsh NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_welsh Lista_seeli NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUUAAGUG----CCCAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_seeli Lista_gray1 NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUCAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_gray1 Lista_gray2 NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGGUC----GA-GCUUGAGUUGCGAGC + GCU-CGUAG-----------------------AUGCUCAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_gray2 Lista_ivano NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU + GCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_ivano FIRMICUTES: Lactobacillales Lacbl_gasse GGGGAUG----UUUUGGGA--UUCGACAGGCGUAGAUU----CG-CGUUGA-CUGCGAUU + GAU-CGUAG-----------------------AGGUUAACGAC----GGAAUACGUUUGGAC-AGGGGUUCAAUUCCCCU-CAUCUCCAuaa Lacbl_gasse Lacbl_johns GGGGAUG----UUUUGGGA--UUCGACAGGCGUAGAUU----CG-CGUUGA-CUGCGAUU + GAU-CGUAG-----------------------AUGUUAACGAC----GAAAUACGUUUGGAC-AGGGGUUCAAUUCCCCU-CAUCUCCAuag Lacbl_johns Lacbl_sakei GGGGCCG-----UUACGGA--UUCGACAUGUGUAGGUG----AG-CGUGAA-UUGCACUU + GAG-UGUAG-----------------------AGAUUGACGUG----GCAAUGCGCAUGGAC-GCGGGUUCAACCCCCGC-CGGCUCCAuug Lacbl_sakei Lacbl_delb1 NNNNNNN----NNNNNNNN--NNNNNNAAGCACAGUUCG---AG-CUUGAA-UUGCGUUU + GAA-CGUAG-----------------------AUUUUUAAGUG----UCGAUGUGUUUNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lacbl_delb1 Lacbl_delb2 GGGGAUG----UUUUGGGA--UUCGACAGGCGCAGACC----CG-CGCUGG-UUGCGAUU + GAU-CGUAG-----------------------AGAUUAGUGAC----GGGAUGCGUUUGGAC-AGGGGUUCAAUUCCCCU-CAUCUCCAucu Lacbl_delb2 Lacbl_casei GGGGGUG-----UAAUGGU--CUCGACAUUGCUUUUCG----CA-CAUGCA-GUGCACCU + AGG-UGUAG-----------------------AGCUGCAUGUA----GCAGGGGUGAUGGAC-AGGAGUUCGAUUCUCCU-CACCUCCAuua Lacbl_casei Lactb_aciph GGGGAUG----UUUUGGGA--UUCGACAGGCGUAGACC----CG-CAUUGA-CUGCGAUU + GAU-CGUAG-----------------------AGGUUAAUGAC----GAGAUGCGUUUGGAC-AGGGGUUCAAUUCCCCU-CAUCUCCAuag Lactb_aciph Lacbl_helve NNNNNNN----NNNNNNNN--NNNNNNNNNCGUAGAUU----CG-CAUUGA-CUGCGAUU + GAU-CGUAG-----------------------AGGUCAGUGAC----GGAAUGCGUCUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Lacbl_helve Lacbl_galli NNNNNNN----NNNNNNNN--NNNNNNNNNCGUAGAUU----CG-CAUUGA-NUGCGAUU + GAU-CGUAG-----------------------AGUUCAGUGAC----GGAAUGCGUUUGGAC-ACNNNNNNNNNNNNNNN-NNNNNNNNNNN Lacbl_galli Lacbl_plan1 NNNNNNN----NNNNNNNN--NNNNNNNNNUAUAGUUU----GA-GUUCGA-UUGCGCUU + GAG-CGUAG-----------------------AUAUCCGAGGG----GCAAUAUGCUUAGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Lacbl_plan1 Lacbl_plan2 GGGGAUG-----UUCUGGA--UUCGACAGGUAUAGUUU----GA-GUUCGGAUUGCGCUU + GAG-CGUAG-----------------------AUAUCCGAGGG----GCAAUAUGCUUGGAC-GCGAGUUCGACUCUCGC-CAUCUCCAuua Lacbl_plan2 Lacbl_brevi GGGGCCG-----UUCUGGA--UUCGACUGGUAUAGGUUG---CG-CCCCAA-CUGCACUC + GAG-UGUAG-----------------------ACGUUGGGGUG----GCAAUAUGCUAGGAC-GCGGGUUCGAUCCCCGC-CGGCUCCAuau Lacbl_brevi Pedio_pento GGGGUCG-----UUAUGGA--UUCGACAGGUAUGGGUCG---AG-CCAUGA-CUGCAUUU + GAA-UGUAG-----------------------AUGUCAUGGUG----GCGACAUGCUUGGAC-GCGGGUUCGACUCCCGC-CGACUCCAuuu Pedio_pento Leuno_mesen GGGUCUG----UUUUUGGAA-UUCGACAGGUCGUUUA-----GA-GCAUUGAUUGCGUUU + AAA-CGUAG-----------------------AUAUUGGUGUA----UCGGGCGAUUUGGAC-AGGGGUUCGACUCCCCU-CAGAUCCAuuu Leuno_mesen Leuno_lacti NNNNNNN----NNNNNNNN--NNNNNNNNNCUGUUUA-----GG-GCAUGGACUGCGUUU + AAG-CGUAG-----------------------AGGUUCAUGUA----CCGGGCAGUUUGGAC-ANNNNNNNNNNNNNNNN-NNNNNNNNNNN Leuno_lacti Leuno_pseud NNNNNNN----NNNNNNNN--NNNNNNNNNUCGUUUA-----GA-GCAUUGCCUGCGUUU + AAG-CGUAG-----------------------GCGCCAAUGUA----UCGGACGGUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Leuno_pseud Oenoco_oeni GGGGUAG-----UUCCGGAA-UUCGACAGGUUAUUA------CAAGCAUGGAUUGCGUUC + GAG-CGUAG-----------------------AUAUUUAUGUG---AUUGGAUAAUUUGGAC-AUGGGUUCGACUCCCAU-CUACUCCAuau Oenoco_oeni Carnb_mltar uagcaca-----auauguu--acauuauuuaugugag-----ca-aguucgauaaaaguu + GAA-CGUAG-----------------------AUGUCUAAGUG----CCGAUAUGCUUGGAC-AGGGGUUCGACUCCCCU-CGUCUCCAuau Carnb_mltar Entco_duran NNNNNNN-----NNNNNNN--NNNNNNNNNCACAGUUC----GA-GCUUGAAUUGCGUUU + GAA-CGUAG-----------------------AUUUUUAAGUG----UCGAUGUGUUUGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Entco_duran Entco_faecm GGGGACG-----UUACGGA--UUCGACAGGCACAGUC-----GA-GCUUGAAUUGCGUUU + GAA-CGUAG-----------------------AUUUUUAAGUG----GCGAUGUGUUUGGAC-GCGGGUUCGACUCCCGC-CGUCUCCAuug Entco_faecm Entco_faes1 GGGGGCG-----UUACGGA--UUCGACAGGCAUAGUU-----GA-GCUUGAAUUGCGUUU + GAA-CGUAG-----------------------AGAUUUAAGUG----GCAAUAUGUUUGGAC-GCGGGUUCGACUCCCGC-CGUCUCCAuuu Entco_faes1 Entco_faes2 NNNNNNN-----NNNNNNN--NNNNNNNNNCAUAGUU-----GA-GCUUGAAUUGCGUUU + GAA-CGUAG-----------------------AGAUUUAAGUG----GCAAUAUGUUUGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Entco_faes2 Strpco_equi GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCCUAUUUUGCAACU + GGU-UGUAG-----------------------ACAAAUAGGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuca Strpco_equi Strpc_zooep GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCCUAUUUUGCAACU + GGU-UGUAG-----------------------ACAAAUAGGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuca Strpc_zooep Strpc_suis1 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCUUGUUCUGCAACU + GGU-UGUAG-----------------------ACGAAUAAGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuau Strpc_suis1 Strpc_suis2 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCUUGUUCUGCAACU + GGU-UGUAG-----------------------ACGAAUAAGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuau Strpc_suis2 Strpc_uberi GGGGUUG-----UUACGGA--UUCGACAGGCACUAU------GAGGCAUGUUUUGCAACU + GGU-UGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuua Strpc_uberi Strpc_pyog1 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUGUUUUGCGUCC + GGA-CGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuca Strpc_pyog1 Strpc_pyog2 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUGUUUUGCGUCC + GGA-CGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuca Strpc_pyog2 Strpc_pyog3 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGUAUAUUUCGCGACU + AGU-UGUAG-----------------------ACAAAUAUAUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuau Strpc_pyog3 Strpc_agal1 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGUAUAUUUCGCGACU + AGU-UGUAG-----------------------ACAAAUAUAUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuau Strpc_agal1 Strpc_agal2 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGUAUAUUUUGCGACU + AGU-UGUAG-----------------------ACAAAUAUAUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuau Strpc_agal2 Strpc_mutan GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGACCUAUUUUGCGACU + AGU-UGUAG-----------------------ACAAAUGGGUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuua Strpc_mutan Strpc_gordo GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU + GGU-UGUAG-----------------------ACAAAUGUGUU----GGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuau Strpc_gordo Strpc_pneu1 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU + GGU-UGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuua Strpc_pneu1 Strpc_pneu2 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU + GGU-UGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuua Strpc_pneu2 Strpc_pneu3 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU + GGU-UGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuua Strpc_pneu3 Strpc_mitis GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU + GGU-UGUAG-----------------------ACAAAUAUGUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuug Strpc_mitis Strpc_sobri GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCUUGUUUUGCAACC + GGU-UGUAG-----------------------ACGAAUAAGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuag Strpc_sobri Strpc_ther1 NNNNNNN-----NNNNNNN--NNNNNNNNNCAUUAU------GAGGCAUAUUCUGCGACU + GGU-CGUAG-----------------------ACGAAUAUGUU----GGCAGAUGCUUGGAC-GUNNNNNNNNNNNNNNN-NNNNNNNNNNN Strpc_ther1 Strpc_ther2 GGGGCCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUCUGCGACU + GGU-CGUAG-----------------------ACGAAUAUGUU----GGCAGAUGCUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuaa Strpc_ther2 Strpc_ther3 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUCUGCGACU + GGU-CGUAG-----------------------ACGAAUAUGUU----GGCAGAUGCUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuaa Strpc_ther3 Laccc_raffi NNNNNNN-----NNNNNNN--NNNNNNNNNUGUUGU------CGCGUAUGAGCUGCGAUU + GAU-UGUAG-----------------------ACGCUGAUAUA----GCAAGGCAUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_raffi Laccc_plant NNNNNNN-----NNNNNNN--NNNNNNNNNUGUUGU------CGCGUAUGAGCUGCGAUU + GAU-UGUAG-----------------------ACGCUGAUAUA----GCAAGGCAUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_plant Laccc_garvi NNNNNNN-----NNNNNNN--NNNNNNNNNCAUUGU------CGCGCAUGAACUGCAACU + GGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUCUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_garvi Laccc_lact1 GGGGGCG-----UUACGGA--UUCGACAGGCAUUGU------CGCGCAUGAACUGCAACU + GGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGGGGUUCGACUCCCCU-CGCCUCCAuug Laccc_lact1 Laccc_lact2 GGGGGCG-----UUACGGA--UUCGACAGGCAUUGU------CGCGCAUGAACUGCAACU + GGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGGGGUUCGACUCCCCU-CGCCUCCAuua Laccc_lact2 Laccc_lact3 NNNNNNN-----NNNNNNN--NNNNNNNNNCAUUGU------CGCGCAUGAACUGCAACU + GGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_lact3 Laccc_lact4 NNNNNNN-----NNNNNNN--NNNNNNNNNCAUUGU------CGCGCAUGAACUGCAACU + GGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_lact4 ACTINOBACTERIA Actmy_naesl GGGGAUG------AUCGGU--UUCGACGACGGUCGUA-----GGUUCAGGAGAAGCGGGU + ACC-CGGAG-----------------------AAGUCCUGUUG-----UGCGGCCGUCGGAC-GGGGGUUCGAUUCCCCC-CAUCUCCACga Actmy_naesl Uncul_hook2 NNNNNNN------NNNNNN--NNNNNNNNNNNNNNNN-----NNNNNAGGAGAAGCGGGC + GCC-CNNNN-----------------------NNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_hook2 Brevi_linen GGGGAUG------AUCGGU--UUCGACGUCGGACACU-----GCGACGGGAGAAGCGGGC + GCC-CGGAG-----------------------AAGUCCUGACA-----AUCUGCCGACGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACCc Brevi_linen Artbr_sFB24 GGGGAUG------AUCGGU--UUCGACGAUGUUAGUC-----GCGACAGGUGAAGCGGGC + GCC-CGGAG-----------------------AAGCCCUGACA-----ACACGACAUCGGAC-GGGGGUUCAAUUCCCCC-CAUCUCCACCA Artbr_sFB24 Kocur_varia NNNNNNN------NNNNNN--NNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNN + NNN-NNNNN-----------------------NNCCGGCGUAU-----UGGAGCUUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuau Kocur_varia Troph_whipp GGGGAUG------ACUGGU--UUCGACGCUGUUUGUG-----UACUCGUGGGAAGCGGGU + ACC-CGUAG-----------------------AAGUCACGGGC-----UCCAUGCCGCGGAC-GGGGGUUCGAUUCCCCC-CAUCUCCACug Troph_whipp Clavi_michi GGGGAUG------AUCGGU--UUCGACAUUGCCUGAA-----UGACUGCGAGAAGCGGGU + ACC-CGUAG-----------------------AAGGCGCAGGA-----UUACAGCAGUGGAC-CGGGGUUCGAUUCCCCG-CAUCUCCACCA Clavi_michi Leifso_xyli GGGGAUG------AUCGGU--UUCGACAUUGUCUGCG-----UGAGUAUGAGAAGCGGGU + GCC-CGUAG-----------------------AAGGCAUAUGA-----CCACAGCAGUGGAC-GGGGGUUCGAUUCCCCC-CAUCUCCACCA Leifso_xyli Coryn_dipht GGGGCUG----AUUUUGGU--UUCGACUGCGUGCAUU-----AAGCUAGGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCCUAGCG-----AGGUGACGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACCA Coryn_dipht Coryn_gluta GGGGCUG-----ACAUGGU--UUCGACUACGUUGAUU-----UAGCCAGGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCCUGGCG-----AGGUGACGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACCg Coryn_gluta Coryn_effic GGGGCUG-----ACAUGGU--UUCGACUACGUUGAUU-----GAGCCAGGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCCUGGCA-----AAGUAGCGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACga Coryn_effic Gordo_rubri NNNNNNN------NNNNNN--NNNNNNUGCGUACGUU-----GAGGUAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUAGCU-----UUGCUGCGGAGGAC-CCGGNNNNNNNNNNNNN-NNNNNNNNNNN Gordo_rubri Mycbm_aviu1 GGGGCUG------AAAGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACug Mycbm_aviu1 Mycbm_aviu2 GGGGCUG------AAAGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_aviu2 Mycbm_scrfl NNNNNNN------NNNNNN--NNNNACAUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGUCUUGAGG-----GAAUGCCGUUGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_scrfl Mycbm_intra NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGUCUUGAGG-----GAAUGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_intra Mycbm_xenop NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GUAUGCCGUANNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_xenop Mycbm_flave NNNNNNN------NNNNNN--NNNNACUUCGAGCGUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAACGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_flave Mycbm_malmo NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_malmo Mycbm_szulg NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_szulg Mycbm_chelo NNNNNNN------NNNNNN--NNNNACAGCGAGUCUC-----GACUUAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUAAUG-----AACGGCCGUUGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_chelo Mycbm_kansa NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUANNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_kansa Mycbm_gordo NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUANNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_gordo Mycbm_bovis GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_bovis Mycbm_micr1 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_micr1 Mycbm_micr2 NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUANNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_micr2 Mycbm_tube1 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_tube1 Mycbm_afric GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_afric Mycbm_tube2 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_tube2 Mycbm_lepra GGGGCUG------AAAGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG----GAAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_lepra Mycbm_mari1 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACaa Mycbm_mari1 Mycbm_mari2 NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_mari2 Mycbm_smegm GGGGCUG------AACGGU--UUCGACUUCGAGCAUC-----GAAUCCAGGGAAGCGUGC + GCA-CGGAG-----------------------AAGCCUCGAGG-----ACAUGCCGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACCA Mycbm_smegm Nocar_farci GGGGCUG------AACGGU--UUCGACUGCGUACGUU-----GAUUCAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUGAAG-----ACGCGGCGGAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACga Nocar_farci Nocar_aste1 NNNNNNN------NNNNNN--NNNNACUGUGUGCGCC-----GAGGUAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUACUG-----ACUCGACACAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Nocar_aste1 Nocar_aste2 NNNNNNN------NNNNNN--NNNNACUGUGUGCGCC-----GAGGUAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUACUG-----ACUCGACACAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Nocar_aste2 Rhococ_equi NNNNNNN------NNNNNN--NNNNNNUGCGUACGUU-----GAGCAAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUCGCG-----AGGCGGCGGAGGAC-CCGGNNNNNNNNNNNNN-NNNNNNNNNNN Rhococ_equi Propi_acne1 GGGGAUG------ACUGGU--UUCGACUUGGAAUGGU----UGUUCCAGGAGAAGCGGGC + GCC-CGGAG-----------------------AAUGUCUGGAC-----GGUCUUUCAAGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCACua Propi_acne1 Propi_acne2 GGGGAUG------ACUGGU--UUCGACUUGGAAUGGU----UGUUCCAGGAGAAGCGGGC + GCC-CGGAG-----------------------AAUGUCUGGAC-----GGUCUUUCAAGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCACua Propi_acne2 Propi_acnp1 gagcugu------agugca--gcguuuuccggacGGU----UGUUCCAGGAGAAGUGGGG + GCC-CGGAA-----------------------AAUGUCUGGAC-----GGUCUUUCAAGGAC-GUGGGUUCAAUUCCUGC-C-UCUCCACua Propi_acnp1 Propi_acnp2 gagcugu------agugca--gcguuuuccggacGGU----UGUUCCAGGAGAAGUGGGG + GCC-CGGAA-----------------------AAUGUCUGGAU-----GGUCUUUCAAGGAC-GUGGGUUCAAUUCCUGC-C-UCUCCACua Propi_acnp2 Stmyc_coeli GGGGAUG------AUCGGU--UUCGACAGCGGCUGUC-----GAAGCAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUGAUU-----CCGCACCGUUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACga Stmyc_coeli Stmyc_livid GGGGAUG------AUCGGU--UUCGACAGCGGCUGUC-----GAAGCAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUGAUU-----CCGCACCGUUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACnn Stmyc_livid Stmyc_scabi GGGGAUG------AUCGGU--UUCGACAGCGGAUGUC-----GAGGCAGGGGAAGCGUGU + ccg-gcuga-----------------------cagcgcgggcg-----agcacggcgcgccg-gguggcgggaugaccgc-acuccccacgc Stmyc_scabi Stmyc_colli GGGGAUG------AUCGGU--UUCGACAGCGGAUGUC-----GAAGCAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUCCUU-----CCGCACCGUUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACCA Stmyc_colli Stmyc_aureo GGGGAUG------AUCGGU--UUCGACAGGGGAUGUU-----GAAACAGGGGAAGCGAGC + GCU-CGGAG-----------------------AAGCCCUGAAU-----UAACUCCACUGGAC-CCGGGUUCGAUUCCCGC-CAUCUCCACCA Stmyc_aureo Stmyc_averm GGGGAUG------AUCGGU--UUCGACAGCGGCUGUU-----GAAGCAGGGGAAGCGUGU + ACA-CGGAG-----------------------AAGCCCUGAUU-----CUGCACCGGUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACga Stmyc_averm Thbif_fusca GGGGGUG------AUCGGU--UUCGACUUCGAUGGUU-----GUUGUAGGGGAAGCGGGC + GCC-CGGAG-----------------------AAGCCCUGCUG-----CAGCAUCGAAGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACgc Thbif_fusca Kineo_radio GGGGAUG------ACAGGU--UUCGACGUUGGUCGUC-----GAGCCAGGGGAAGCGGGU + ACC-CGGAG-----------------------AAGCCCUGGUA-----CCACGCUGACGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACuc Kineo_radio Frnkia_CcI3 GGGGGUG------ACCGGC--UUCGACUCCGGACGUC-----GAGGCAGGGGAAGCGGGC + GCC-CGGAG-----------------------AAGCCCUGUGU-----CGGGGCCGGAGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACaa Frnkia_CcI3 Frnkia_EAN1 GGGGGUG------ACCGGC--UUCGACUCCGGACGUC-----GAGGCAGGGGAAGCGGGC + GCC-CGGAG-----------------------AAGCCCUGUGU-----CGGGGCCGGAGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACCA Frnkia_EAN1 Bifid_long1 GGGGGCG------AUCGGU--UUCGACGGUGACCUGU----UCGCUGCAGGGAAGCGUGC + GCA-CGUAG-----------------------AAGACUGUGGG-----UUCGGUCAUCGGAC-CGGGGUUCAAUUCCCCG-CGCCUCCACCA Bifid_long1 Bifid_long2 GGGGGCG------AUCGGU--UUCGACGGUGACCUGU----UCGCUGCAGGGAAGCGUGC + GCA-CGUAG-----------------------AAGACUGUGGG-----CUCGGUCAUCGGAC-CGGGGUUCAAUUCCCCG-CGCCUCCACCA Bifid_long2 Rbrbr_xylan GGGGGCG-----AUCCGGC--UUCGACGGGAGCGGAC----AGCGUCCGGUGAGACGAGC + GCU-CGUAC-----------------------AAUCUCCCGGA---UGGCGCGCUCGCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACug Rbrbr_xylan CYANOBACTERIA/PLASTIDS CYANOBACTERIA: Gloeobacteria Gloeo_viola GGGGAUG-----UACUGGC--UUCGACAGGGCAAUUAGAGCGUAACUGAAGCC------- + *********************************ACUAGGGUGCGUGAUCGGCUGUUCUGGAC-AGGGGUUCGAUUCCCCU-CAUCUCCACCA Gloeo_viola CYANOBACTERIA: Prochlorales Proch_mari1 GGGGUUG-----UAAUGGU--UUCGACGGGGCGUAAGGAAGAUGACUGAAGCC------- + *********************************ACUAGGUGAUCUCAACCGAUGUUUCGGAC-AGCGGUUCGAUUCCGCU-CAACUCCAuuu Proch_mari1 Proch_mari2 GGGGCUG-----CAAUGGU--UUCGACGGGGUAUGAGGAGGGUGACUGAAGCC------- + *********************************ACUAGGUGAUCCACACCAGUGUCUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Proch_mari2 Proch_mari3 GGGGCUG-----CAAUGGC--UUCGACGGGGUUCUAGGAGUUUGACUGAAACC------- + *********************************ACUAGGUGAUUCACACCAUUAUCUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAucu Proch_mari3 Proch_mari4 GGGGCUG-----CAAUGGU--UUCGACGGGGUAUCAGGAGAGUGACUGAAGCC------- + *********************************ACUAGGUGAUUCACACCAGUAUCUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuaa Proch_mari4 CYANOBACTERIA: Chroococcales Cyanbi_6307 GGGGCUG-----CAAUGGU--UUCGACGGGGCAUGAGGAGGGUGACUGAAGCC------- + *********************************ACUAGGUGGUCCACACCAGUGUCUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Cyanbi_6307 Syncoc_9311 GGGGCUG-----CAAUGGU--UUCGACGGGGCAUAAGGAGGGUGACUGAAGCC------- + *********************************ACUAGGUGGUCCACACCGGUGUUUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Syncoc_9311 Syncoc_9902 GGGGCUG-----CAAUGGU--UUCGACGGGACAUAAGGAGGGUGACUGAAGCC------- + *********************************ACUAGGUGAUUCACACCAGUGUUUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Syncoc_9902 Syncoc_7009 GGGGCUG-----CAAUGGU--UUCGACGGGGCAUGAGGAGGGUGACUGAAGCC------- + *********************************NNNNNNNNNNNNNNNNNNGUGUUUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Syncoc_7009 Syncoc_6904 GGGGCUG-----CAAUGGU--UUCGACGGGGCAUGAGGAGGGUGACUGAAGCC------- + *********************************NNNNNNNNNNNNNNNNNNGUGUCUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Syncoc_6904 Syncoc_9605 GGGGCUG-----CAAUGGU--UUCGACGGGGCAUGAGGAGGGUGACUGAAGCC------- + *********************************ACUAGGUGAUCCACACCAGUGUUUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Syncoc_9605 Syncoc_8102 GGGGCUG-----CAAUGGU--UUCGACGGGGCAUGAGGAGGGUGACUGAAGCC------- + *********************************ACUAGGUGAUCCACACCAGUGUUUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Syncoc_8102 Synco_elong GGGGCUG-----UAAUGGU--UUCGACGUGUUGGUGAA--UCCUUCACCGUGAUUCAGGC + GCC-UGUGA----------------------ACGAGCGGAAAGUU-ACUAGUCAAUGCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuu Synco_elong Syncoc_7002 GGGGCCG-----CAACGGU--UUCGACAGGUUGGCGAA-AGCUUCCACUGUGAUGCAGGU + ACC-UGUGA----------------------AUGAGCUAGGGGUG-AAUACCCAGUUUGGAC-AGCAGUUCGACUCUGCU-CGGCUCCAuuu Syncoc_7002 Syncys_6803 GGGGCCG-----CAAUGGU--UUCGACAGGUUGGCGAA--AGCUUGCCCGUGAUACAGGU + ACC-UGUGA----------------------AUGAGCGGAAAGUU-AAUACCCAGUUUGGAC-AGCAGUUCAAUUCUGCU-CGGCUCCAuuu Syncys_6803 Croco_watso GGGGCCG-----CAACGGC--UUCGACAGGCUGGCGAA--AUCCAAAUUGUGAUUCAGGU + GCC-UGUGA----------------------AUGAGCGGUAGGUC-AAUACCCAGUCUGGAC-AGCAGUUCGACUCUGCU-CGGCUCCAuuc Croco_watso Thsyn_elong GGGGCUG-----AAACGGC--UUCGACGUCCUAGUGAA--AGUUGGGCUGUGAUGCAGGU + GCC-UGUGA----------------------AAGAGCAGUCGAUG-AAUAGCUAGGGCGGAC-ACGGGUUCGACUCCCGU-CAGCUCCAuua Thsyn_elong CYANOBACTERIA: Pleurocapsales Chrooc_6712 NNNNNNN-----NNNNNNN--NNNNNNAGGUUGGCGAA--AGCUAAUCUGUGAUGCAGGU + ACC-UGUGA----------------------AUGAGCAGAAUGUC-AUUAUCCAGUCUGGAC-AGCANNNNNNNNNNNNN-NNNNNNNNNNN Chrooc_6712 CYANOBACTERIA: Oscillatoriales Oscill_6304 NNNNNNN-----NNNNNNN--NNNNNNAGUGGAGUGAA--AGCUGCUCCGUGAUUCAGGC + GCC-UGUGA----------------------AUGAGCGGUAGGCG-AAUACCUCUGCUACAC-AGCANNNNNNNNNNNNN-NNNNNNNNNNN Oscill_6304 Oscill_7515 NNNNNNN-----NNNNNNN--NNNNNNAGGGUGGUGAA--AUCUGCUUUGUGAUGCAGGU + ACC-UGUGA----------------------AUGAUCGAAGAGUG-AAUAGCCACUUUGGAC-ACGGNNNNNNNNNNNNN-NNNNNNNNNNN Oscill_7515 Trchd_eryth GGGGCAU-----UAACGGU--UUCGACAGGGUGGUGAA--AUCUGCUUUGUGAUGCAGGC + ACC-UGUGA----------------------AUGAGUGAAGGGUG-AAUAGCCAUUUUGGAC-AUGGGUUCGACUCCCAU-AUGCUCCAuac Trchd_eryth Leptl_borya NNNNNNN-----NNNNNNN--NNNNNNAGGUUGGCGAA--CGUUCCAUCGAGAUGCAGGU + ACC-UGUGA----------------------AUGAUUGAUAGAGCUAAUACCCAGUUUGGAC-ACGGNNNNNNNNNNNNN-NNNNNNNNNNN Leptl_borya CYANOBACTERIA: Nostocales Nostoc_7120 GGGUCCG-----UAACGGU--UUCGACAGGUUGGCGAA--CGCUACUCUGUGAUUCAGGU + ACC-UGUGA----------------------AUGAGCGGGGGGUC-AAUACCCAAUUUGGAC-AGCAGUUCGACUCUGCU-CGGAUCCACua Nostoc_7120 Nosto_punct GGGUCCG-----UCACGGU--UUCGACAGGUUGGCGAA--CGCUGCUCUGUGAUUCAGGU + ACC-UGUGA----------------------AUGAGCGGGGGGUC-AAUACCCAAUUUGGAC-AGCAGUUCGACUCUGCU-CGGAUCCACua Nosto_punct Anaba_varia GGGUCCG-----UAACGGU--UUCGACAGGUUGGCGAA--CGCUACUCUGUGAUUCAGGU + ACC-UGUGA----------------------AUGAGCGGGGGGUC-AAUACCCAAUUUGGAC-AGCAGUUCGACUCUGCU-CGGAUCCACua Anaba_varia Fremy_diplo NNNNNNN-----NNNNNNN--NNNNNNAGGUUGGCGAA--CGCUGCUCUGUGAUUCAGGU + ACC-UGUGA----------------------AUGAGCGGAGGGUC-AAUACCCAAUUUGGAC-AGCANNNNNNNNNNNNN-NNNNNNNNNNN Fremy_diplo PLASTIDS: Viridiplantae Mesos_virid GGGGUUG-----AAAUGGU--UUCGACGUUUUAGUAU-AUAUC--UUCUUACAAGCAAGU + ACU-UGUGAAUA-----------------------CAAAGAAGAGAUCAAACUAAAGCGGAC-GCGGGUUCAAAACCCGC-CAGCUCCAuaa Mesos_virid Nephr_oliva GGGGUUG-----UCAUGGA--AUCGACGUCUCUUCUA-AGAACGAAAGGUUAAAGCAGGU + ACCAUGUGAAUA-----------------------UAACCUUUCGGGCCUCGAGAGACGGAA-GUGAGUUCAAUUCUCAC-CAACUCCACCA Nephr_oliva PLASTIDS: Glaucocystophyceae Cyanp_parad GGGGCUG-----UUUAGGU--UUCGACGUUUUUUUCUAAUUAU--GUUUGUUAAGCAAGU + ACU-UGUGA--------------------------AUAAACGCAUAAUUUAAAAAAACGGAC-GUGGGUUCAAAUCCCAC-CAGCUCCACuc Cyanp_parad PLASTIDS: stramenopiles Ampho_coffa NNNNNNN-----NNNNNNN--NNNNNNAUCUAAAAUUAAUUAC---UAUAUGAAUCAGGU + GCC-UGUGAACG----------------------AGUAUAUUAAAUC--AUUUUAGAUGGAC-AUGGNNNNNNNNNNNNN-NNNNNNNNNNN Ampho_coffa Thala_weiss GGGGCUG-----AUUUGGU--UUCGACAUUUAAAACUUCUUUC-----UAUGUGUCAGGU + ACC-UGUAAACGCA--------------------AAUAC--UAAGAAA--UUUUAGAUGGAC-AUGGGUUCAAUUCCCAU-CAGUUCCAauc Thala_weiss Thala_pseud GGGGCUG-----AUUUGGU--UUCGACAUUUAAACACUAUUUC-----UAUAUGUCAGGU + ACC-UGUAAAUGAG--------------------UAUAU--UAAUAAA--CUUUAGAUGGAC-AUGGGUUCAAUUCCCAU-CAGCUCCAaua Thala_pseud Odont_sinen GGGGCUG-----ACUUGGU--UUCGACAUUUAAAAAUUG---UUACAGUAUGAUGCAGGU + ACC-UGUGAACG----------------------AAUACUAUAAUAAAAUUUUUAGAUGGAC-GUGGGUUCGACUCCCAU-CAGCUCCAuau Odont_sinen Skele_costa NNNNNNN-----NNNNNNN--NNNNNNAUUUAAAAGUUAUUUA-----UAUAAGCCAGGU + GCC-UGUAAACG----------------------CGUGU--AUAAAUAAGCUUUAGAUGGAC-AUGGNNNNNNNNNNNNN-NNNNNNNNNNN Skele_costa Frgla_pinna NNNNNNN-----NNNNNNN--NNNNNNAUUUGAAAAUAACUAA---AGUAUGAUGCAGGU + GCC-UGUGAACG----------------------AAUAC--UUUAAUUAAAUUUAGAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Frgla_pinna Bolidom_OLI NNNNNNN-----NNNNNNN--NNNNNNAUUAUAAAAAUUUUAA---AUUAUGAUGCAAGU + ACU-UGUGAACG----------------------AUUAAUUUAUCAC--UUUUAUAAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Bolidom_OLI Pylai_litto NNNNNNN-----NNNNNNN--NNNNNNAUUUAAAAUUAUAAU-------------AGUUA + UAA-CUAAAUCUGUGAUUU-----UAGUACUUAGUUUGAUAAUU------UUUUAAAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Pylai_litto PLASTIDS: Haptophyceae Pavlo_luthe GGGGCUG-----UUUAGGU--UUCGAUCCUAAAAAAAACUAAUA--AGUGUGAUGCAAGU + NNNNNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Pavlo_luthe Prymn_parvu NNNNNNN-----NNNNNNN--NNNNNNAUUUAGGUCUGGA----AGUUUUUAA--AAUAU + AUG-UUUUCU-------------AUGGUUGUAAAUAAAGAACUUUUUUAGGGCUAAAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Prymn_parvu Emiln_huxle GGGGCUG-----UUUUGGA--AUCGACAUUAAAAUUUUUA------GGACAUU--UUGUU + AAU-AAAACG--------------CCGUAGUUGACAAAGGUUCAAUUUAAAAUUGAAUGGAC-GUGGGUUCAAAUCCCAC-CAGCUCCAaaa Emiln_huxle PLASTIDS: Rhodophyta Cydum_calda GGGGCUG------AAAGGAUAUUCGACAUAUUAAUUUCGUGCG----CUAUGAUGCAAGC + GCU-UGUAGU------------------------AACUAUCUAGUGUACAAUUUCUAUGGAC-GUGGGUUCAAUUCCCAC-CAGCUCCACaa Cydum_calda Cysch_merol GGGGCUG------UAAGGU-GUUCGACAUAAGUUGUU------------------GUUAU + GUA-ACGAA---------------------------------------AACAACUUAUGGAC-GUGGGUUCAAUUCCCAC-CAGCUCCAaug Cysch_merol Rhoso_marin NNNNNNN------NNNNNN--NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNAAUACAAGU + ACU-UGGAAUAC------------------------UAUUGACUAAUACAAUCUAAUUGGAC-GAGGNNNNNNNNNNNNN-NNNNNNNNNNN Rhoso_marin Porpa_purpu GGGGCUG------CAAGGU--UUCUACAUUGUGAAAAAACAAA-UAUAUGAAAGUAAAAC + GUU-UUUUACCUGAAUUG--AUU-CAAUUUAAGGUUAGUAUUUUUUGAUUUUUACAAUGGAC-GUGGGUUCAAGUCCCAC-CAGCUCCAuca Porpa_purpu Graci_tenui GGGACUG------CAAGGU--UUCUACAUAUAGU-----AUAC-AAUAUA---CAUUGUC + GAC-GA----------------------------------UAUAUAGUAUAUUAUUAUGGAC-GUGGGUUCAAUUCCCAC-CAGUUCCAuac Graci_tenui Mastc_papil NNNNNNN------NNNNNN--NNNNNNAUAUAGU-AUUGUAUG-UAUAAGUAGUAAAGGA + UCC-UUUGUACUUGA----CUUG----UAUAAGUAUACUUUACAUACAGUUUUGAUAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Mastc_papil Prion_lance NNNNNNN------NNNNNN--NNNNNNAUAUAAUUC-CGUCUA-UAUAAGGUUCAGAGAA + UUC-UCUUGACUUAGUCAAUAAUUUGAUAAUUGUCAACUUAUUAAGCUGAAUUACUAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Prion_lance PLASTIDS: Cryptophyta Guill_theta GGGGCUG-----AUUUGGA--UUCGACAUAUAAAUUUGCGUGUUUCAUUAUGAAGCAAGU + ACUUUGUGAAAG----------------------AAUAGUGGGCUCC-AUUUAUA-AUGAAC-GUGGGUUCAAAUCCCAC-CAGCUCCAuag Guill_theta Rhomo_salin NNNNNNN-----NNNNNNN--NNNNNNAUUUUGGAAAGAAUAGUA--UUAUGAUGCAAGU + ACU-UGUGAAUG----------------------AGUGUGCUACGUAAG--CUGAAAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Rhomo_salin VIRUSES MPhage_Bxz1 GGGCCUG-----ACAAGGU--UUCGACUGGUCGAUGG------ACAACUGAACAGCGGGC + GCC-CGUAG-----------------------AACGCAGUGAG-----AAAGACACCAGGAC-AGGGGUUCGAGUCCCCU-CAGGUCCACgu MPhage_Bxz1 BaciPhage_G GGGAUUG-----UUAAGGA--UUCGACAGGGGAAAAU-----AGUAUAAGACAUGAUACU + GGUAUCAAA-------------------------CAAGUGUCUAUAUGAAAGUCUUCUGGAC-GCGGGUUCGACUCCCGC-CAGUUCCAuau BaciPhage_G AQUIFICAE Aquif_aeoli GGGGGCG-----GAAAGGA--UUCGACGGGGACAGGCG-----GUCCCCGAGGAGCAGGC + GCC-UGUAG-----------------------AGCCUCGGAUGU-GGCCGCCGUCCUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Aquif_aeoli Sulfh_azore GGGGGCG-----AUACGGG--UUCGACGGCAAGAGCAG------GCAAAGGGAAGCAUGC + GCA-UGUAG-----------------------AUGCCCUACUGC-UUAGGCUCUUGUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACuc Sulfh_azore THERMOTOGAE Thtog_mari1 GGGGGCG------AACGGG--UUCGACGGGGAUGGAGU------CCCCUGGGAAGCGAGC + GCU-CGGAG-----------------------AAGCCCAGGGGC----CUCCAUCUUCGGAC-GGGGGUUCGAAUCCCCC-CGCCUCCACCA Thtog_mari1 Thtog_mari2 NNNNNNN------NNNNNN--NNNNNNGGGGAUGGAGU------CCCCUGGGAAGCGAGC + GCU-CGGAG-----------------------AAGCCCAGGGGC----CUCCAUCUUCGGAC-GGGGGUUCNNNNNNNNN-NNNNNNNNNNN Thtog_mari2 Thtog_neapo GGGGGCG------AACGGG--UUCGACGGGGAUGGAGU------CCCCUGGGAAGCGAGC + GCU-CGGAG-----------------------AAGCCCAGGGGC----CUCCAUCUUCGGAC-GGGGGUUCGAAUCCCCC-CGCCUCCACCA Thtog_neapo THERMODESULFOBACTERIA Thdsb_commu GGGGGCG-----AAAAGGG--CUCGACGGGGAUAGGUA------GGAUUAAACAGCAGGC + GCC-UGUAG-----------------------CGGUUUAAUCUG----AACUAUCUCCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Thdsb_commu DEINOCOCCUS-THERMUS Deinc_radio GGGGGUG-----ACCCGGU--UUCGACAGGGGA-ACUG-----AAGGUGAUGUUGCGUGU + ACA-CGUAG-----------------------ACGCACGCUGG-----ACGGACCUUUGGAC-GGCGGUUCGACUCCGCC-CACCUCCACCA Deinc_radio Deinc_geoth GGGGGUG-----ACCCGGU--UUCGACAGGGGA-ACUG-----AAGGUGAUGCUGCGUGU + ACA-CGUAG-----------------------ACGCACGCUGG-----AAGGACUCUUGGAC-GGCGGUUCGACUCCGCC-CACCUCCACCA Deinc_geoth Thmus_ther1 GGGGGUG-----AAACGGU--CUCGACGGGGGUCGCCG-----AGGGCGUGGCUGCGCGC + GCG-CGUAG-----------------------AGGCCCGCCGU-----AGAGACCUUCGGAC-GGGGGUUCGACUCCCCC-CACCUCCACCA Thmus_ther1 Thmus_ther2 GGGGGUG-----AAACGGU--CUCGACGGGGGUCGCCG-----AGGGCGUGGCUGCGCGC + GCG-CGUAG-----------------------AGGCCCGCCGU-----AGGGACCUUCGGAC-GGGGGUUCGACUCCCCC-CACCUCCACCA Thmus_ther2 Uncul_humn3 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNN + GCG-CGNNN-----------------------NNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_humn3 CHLOROFLEXI Chlfl_auran GGGGAUG-----CUCUGGU--UUCGACAGGGAGUGAAC------GCCGUAGACUGCAGGU + ACC-UGUAG-----------------------AUGUCUGCGGU-----CUAGCUUUCUGGAC-GGGGGUUCGACUCCCCC-CAUCUCCACCA Chlfl_auran Thmic_roseu GGGGAUG------ACUGGA--UUCGACAGGGCCGUAGG------UGCGAGGAUUGCAGGU + GCC-UGUAG-----------------------CAUAUCCUCGG----CUGAACGCUCUGGAC-GGGGGUUCGACUCCCCC-CAUCUCCACCA Thmic_roseu Dehco_ethen GGGGACG------CGUGGU--UUCGACAGGGAAGGUAG-----GCUACUGGAUUGCAGGC + UCC-UGUAG-----------------------UAGAUCCUGGG----UCACCUUUUCUGGACGGGGAGUUCGACCCUCCCCCGUCUCCACCA Dehco_ethen NITROSPIRAE Leptm_ferro NNNNNNN-----NNNNNNN--NNNNNNGGGGAUGAGA------AAGCAAGAAUCGCAUGC + GCA-UGUAG---------------------------UGGUUCUUAGCGGACUGUUUCCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Leptm_ferro Leptm_grup2 GGGGGCG------AUCGGG--UUCGACGGGGAUGAGA------AAGCAAGGACAGCAUGC + GCA-UGUAG---------------------------CGGUUCUUGGCGGACUGUUUCCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Leptm_grup2 Leptm_grup3 GGGGGCG------AUCGGG--UUCGACGGGGAUGAGA------AAGCAAGGACAGCAUGC + GCA-UGUAG---------------------------CGGUUCUUGGCGGACUGUUUCCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Leptm_grup3 Therv_yello GGGGGCG------AAAGGA--CUCGACGGAGGUAGUG------AGGGCUAAGCUGCAUGC + GCA-UGUAG----------------------------AUGCUUAGAAGUAGCACCUUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Therv_yello BACTEROIDETES/CHLOROBI Bacro_frag1 GGGGUUG------ACUGGU--UUUGACAGCGGGCAGAA-----AUGGUGGGUAAGCAUGC + GCA-UGUAG----------------------AAAGCUUAUGAU-----UUCCUCGUUUGGAC-GAGGGUUCGAAUCCCUC-CAGCUCCACuu Bacro_frag1 Bacro_frag2 GGGGUUG------ACUGGU--UUUGACAGCGGGCAGAA-----AUGGUGGGUAAGCAUGC + GCA-UGUAG----------------------AAAGCUUAUGAU-----UUCCUCGUUUGGAC-GAGGGUUCGAAUCCCUC-CAGCUCCACuu Bacro_frag2 Bacro_theta GGGGUUG------ACUGGA--UUUGACAGCGGGCAGAA-----AUGGUAGGUAAGCAUGC + GCA-UGUAG----------------------AAAGCUUAUGAU-----UUCCUCGUUUGGAC-GAGGGUUCGAUUCCCUC-CAGCUCCACCu Bacro_theta Uncul_anop1 NNNNNNN------NNNNNN--NNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNN + GCA-UGUAG----------------------AAGGCUUAUGUA-----UUGCCUGUUUGGAC-GAGGGUUCGAAUCCCUC-CAGCUCCACuu Uncul_anop1 Tanne_forsy GGGGCUG------ACCGGU--UUUGACAGCGGGCAGAA-----GUGGUUUGUAAGCAUGC + GCA-UGUAG----------------------AAAGCAAAUUAG-----UUCCUCGUUUGGAC-GAGAGUUCGAAUCUCUC-CAGCUCCACau Tanne_forsy Porpm_gingi GGGGCUG------ACCGGC--UUUGACAGCGUGAUGAA-----GCGGUAUGUAAGCAUGU + ACA-UGUAG----------------------AAAGCAUAUUGA-----UUCCAUGUUUGGAC-GAGGGUUCAAUUCCCUC-CAGCUCCACCA Porpm_gingi Prevo_inter GGGCUUG------UAUGGA--UUUGACGGCAAGACGAA-----AUGGUAUGUAAGCAUGC + GCA-UGUAG----------------------AAAGCGUAUGGU-----UUCCUUGUGCGGAC-CGGAGUUCGACUCUCCG-CAGGUCCACua Prevo_inter Prevo_rumin GGGGUUG------ACUGGA--UUUGACGGCGAGAUGAA-----AUGGUACGUAAGCACGC + GCG-UGUAG----------------------AAAGCGUAUGGU-----UUCCUUGUGCGGAC-GAGGGUUCGACUCCCUC-CAGCUCCACua Prevo_rumin Cytph_hutch GGGGUCG------ACAGGA--AUUGACAGGUUGAGUGA----UUACGUGUGUAAGCAUGC + GCA-UGUAG----------------------AAGAUUCGAUAG----UGGCCUUCUCUGGAC-GAGAGUUCGAAUCUCUC-CGACUCCACCA Cytph_hutch Uncul_farm6 GGGGCCG------ACCGGU--UUUGACAGGAUGUGUAA----UGAUGUAUGUAAGCAUGC + NNN-NNNNN----------------------NNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_farm6 Salbr_ruber GGGGAUG-----ACACGGC--UUCGACGUGUAGUAAGC---GUGCAGCAGACUGACCUGC + GCA-GGUAG----------------------AGGUUUGCCUGU-----GCGGCUACACGGAC-CCGGGUUCGACUCCCGG-CAUCUCCACaa Salbr_ruber Chlbm_tepid GGGGAUG------ACAGGC-UAUCGACAGGAUAGGUGU-----GAGAUGUCGUUGCACUC + GAG-UGUGG----------------------UAACUGCAUCGA-----GCAGUGUCCUGGAC-GCGGGUUCAAGUCCCGC-CAUCUCCACCA Chlbm_tepid Chlbm_chlch GGGGAUG------ACAGGC-UUUCGACAGGGUAGGUGU-----AAGGUGGCGUUGCACUC + GAG-UGUGG----------------------UAGCGUUAUCAA-----GCAAUAUUCUGGAC-GCGGGUUCGAAUCCCGC-CAUCUCCACCA Chlbm_chlch PLANCTOMYCETES Gemma_obscu GGGGGCG-----AUCUGGU--AUCGACCGGGUGUCGGA-----AGUGUUCGGUGGCGUGU + ACA-CGUAG----------------------AUGCCGGCGCGGA-----AGCGCCUCGGGAC-CGGGGUUCGAUUCCCCG-CGCCUCCACuc Gemma_obscu Rhopi_balti GGGGGCG-----ACUUGGA--AUCGACCGGAUGUCAAG----AAGCGUAUGCCUGCGUGU + ACA-UGUAG----------------------ACGGCAUCGUGGA-----UGCAUCGCGGGAC-GGGAGUUCAAUCCUCCC-CGCCUCCACuu Rhopi_balti CHLAMYDIAE/VERRUCOMICROBIA Chlam_trac1 GGGGGUG-----UAAAGGU--UUCGACUUAGAAAUGAA-------GCGUUAAUUGCAUGC + GCA-UGUAG----------------------AGGUUAGCGGGGA-----GUUUACUAAGGAC-GAGAGUUCGACUCUCUC-CACCUCCAuag Chlam_trac1 Chlam_trac2 GGGGGUG-----UAAAGGU--UUCGACUUAGAAAUGAA-------GCGUUAAUUGCAUGC + GCA-UGUAG----------------------AGGUUAGCGGGGA-----GUUUACUAAGGAC-GAGAGUUCGACUCUCUC-CACCUCCAuag Chlam_trac2 Chlam_trac3 GGGGGUG-----UAAAGGU--UUCGACUUAGAAAUGAA-------GCGUUAAUUGCAUGC + GCA-UGUAG----------------------AGGUUAGCGGGGA-----GUUUACUAAGGAC-GAGAGUUCGACUCUCUC-CACCUCCAuag Chlam_trac3 Chlam_murid GGGGGUG-----UAAAGGU--UUCGACUUAGAAAUGAA-------GCGUUAAUUGCAUGC + GCA-UGUAG----------------------AGGUUAGCGGGGA-----GUUUACUAAGGAC-GAGAGUUCGAAUCUCUC-CACCUCCAuag Chlam_murid Chlap_pneum GGGGGUG-----UAUAGGU--UUCGACUUGAAAAUGAA-------GUGUUAAUUGCAUGC + GCA-UGUAG----------------------AGGUUAGCAGGGA-----GUUUGUCAAGGAC-GAGAGUUCGAGUCUCUC-CACCUCCAuua Chlap_pneum Chlap_cavia GGGGGUG-----UAUAGGU--UUCGACUUGGAAAUGAA-------GUGUUAAUUGCAUGC + GCA-UGUAG----------------------AGGUUAGCAGGGA-----GUUUACUAAGGAC-GAGAGUUCGAGUCUCUC-CACCUCCAuuu Chlap_cavia Chlap_abort GGGGGUG-----UAUAGGU--UUCGACUUAGGAAUGAA-------GUGUUAAUCGCAUGC + GCA-UGUAG----------------------AAGUUAGCAGGGA-----GUUUACUAAGGAC-GAGAGUUCGAGUCUCUC-CACCUCCAuac Chlap_abort Pchla_UWE25 GGGGGUG-----UUACGGU--UUCGACUAGGAAGUGAA-------AAAUUGAUUGCAUGC + GCA-UGUAG----------------------UGGUCAAUUCGUA-----AUUUGCCAAGGAC-GAGAGUUCAAUUCUCUC-CACCUCCAauu Pchla_UWE25 Verru_spino GGGGGCG-----UUCUGGU--UUCGACGGAUUGCUAGA------AGUGGAGGCUGCAUGC + GCA-UGGAG----------------------ACGCUUUCAUGGA-----AGGUGGUUCGGAC-AGGGGUUCAACUCCCCU-CGCCUCCACCA Verru_spino SPIROCHAETES Borre_burgd GGGGAUG-----UUUUGGA--UUUGACUGAAAAUGUU----AAUAUUGUAAGUUGCAGGC + GCU-UGUAG----------------------AAGCUUAUAGUAU------UAUUUUUAGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCAuuu Borre_burgd Borre_garin GGGGAUG-----UUUUGGA--UUUGACUGAAAAUGCU----AAUAUUGUAAGUUGCAGGC + GCU-UGUAG----------------------AAGCUUAUAAUAU------UGUUUUUAGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCAuuu Borre_garin Trepo_palli GGGGAUG-----ACUAGGU--UUCGACUAGGGAUGU-----GGGGUGUUGCGCUGCAGGU + ACC-UGUAG----------------------GCGCGCAGCACUC------GCUCUUUAGGAC-GGGGGUUCGAUUCCCCC-CAUCUCCACaa Trepo_palli Trepo_denti GGGGAUG-----UUCCGGU--UUCGACCGGAAAGAC-----GGAGGCUUAAGCUGCAGGC + GCC-UGUAG----------------------ACGCUUCUGAUUC------CCUUUUCGGGAC-GGGGGUUCAAUUCCCCC-CAUCUCCAuca Trepo_denti Lepta_inter GGGGACG----AAAUUGGU--UUCGACUGUUGUUGC-----CAGGGGUUAUGUGGCGUGU + ACA-CGUAG----------------------AGGCUGAUCUGGG------GCGCAAUAGGAC-GCGGGUUCGAACCCCGC-CGUCUCCAaag Lepta_inter FIBROBACTERES/ACIDOBACTERIA Fibro_succi GGGGGUG-----CUCUGGU--UUCGACAGGGUUACC------GAAGUGUUAGUUGCAAGU + ACU-UGUAG----------------------GAACGUACAUGG-----ACGUGAUUUUGGAC-AGGGGUUCGACUCCCCU-CACCUCCAgaa Fibro_succi Acibm_capsu GGGGGCG-----UCACGGU--UUCGACGGGAUUGAC------UGCGGCAAAGAGGCAUGC + GCA-UGGAG----------------------UCUCUUUUCUGAC-----ACCAAUUUCGGAC-GCGGGUUCGACUCCCGC-CGCCUCCACCA Acibm_capsu Solib_usita GGGGGCG-----UAACGGA--UUCGACGGGAUUGAA-----UCGUGGUGGGGAGGCGUGC + GCA-CGUAG----------------------UUCUCUCCAGUAC----GGGCUUUUUCGGAC-GGGGGUUCAACUCCCCC-CGCCUCCACCA Solib_usita Uncul_farm2 GGGGGCG-----CACCGGU--UUCGACGGGAUUGAA-----UCGUUGUGGGAAGGCGUGC + GCA-CGUAG-----------------------UCUUUUCAUGGC----GGACUUUCUCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Uncul_farm2 FUSOBACTERIA Fusob_nucl1 GGGGAUG-----CAAAGGU--UUCGACGGGGUUGUGAG------GUUAUAGGUAGCAAGU + ACU-UGUAG-----------------------AAGCUUAUGG---UCAUUAUGAUUUCGGAC-ACGAGUUCGACUCUCGU-CAUCUCCACCA Fusob_nucl1 Fusob_nucl2 GGGGAUG-----CAAAGGU--UUCGACGGGGUUGUGAG------GUUAUAGGUAGCAAGU + ACU-UGUAG-----------------------AAGCUUAUGG---UCGUUAUGAUUUCGGAC-ACGAGUUCGACUCUCGU-CAUCUCCACCA Fusob_nucl2 Fusob_nucl3 GGGGACG-----CAAAGGU--UUCGACGGGGUUGUGAG------GUUAUAGGUAGCAAGU + ACU-UGUAG-----------------------AAGCUUAUAG---UCAUUAUGAUUUCGGAC-ACGAGUUCGAUUCUCGU-CGUCUCCACCA Fusob_nucl3 DICTYOGLOMI Dicgl_therm GGGGGCG------AUUGGU--UUCGACAGGGAGUACAA----GGAUCAAAAGCUGCAAGC + GCU-UGUAG-----------------------AGGCUUUUGAUU----CUUGCUCUCUGGAC-GCGGGUUCGACUCCCGC-CGCCUCCACCA Dicgl_therm UNCLASSIFIED BACTERIA Uncul_farm3 GGGGCUG----AC--AGGA--AUCGACAGUAGAGUG----UAUCAUGUCAGUAAGCAUGC + GCA-UGUAG----------------------AAAGCUGAUGUG-----GGCUUUAGCUGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Uncul_farm3 Uncul_farm8 GGGGGCG------AUCGGU--UUCGACGGGGGUCGC-----GAAAUCGCCUGGAGCAUGC + GCA-UGUAG----------------------CGCCGGGGAUGU------AGCGCCUUCGGAC-GGGGGUUCAAUUCCCCC-CGCCUCCACCA Uncul_farm8