Selected tmRNA Alignment 15-Feb-2006 by Kelly Williams for The tmRNA Website, with base-pairing color-coded as in home page diagram. Underline marks the predicted reading frame for the proteolysis-inducing peptide tag. Lowercase marks segments not homologous to tmRNA, intervening segments that are absent in the mature tmRNA, and portions of the expected 3-prime CCA tail that are not encoded in the genome. GAMMA-PROTEOBACTERIA Acidithiobacillales Acthi_ferr1 GGGGGCG------ACCGGC--UUCGACGCAGGUCGC------GAAGCCUUCGGUGCAUGC--AGAGC--UGCGGUUC--GCUCUUAAAACU---------GGUCGCA---GAUUCAUAAUUGCCAACGACAGCAAU---------------------------------------------------------UACGCUCUCGCUGCUUAA----------------------------GCAGUGAG------------------------CCCUCUGCCCGGAUUU-----------------GUCUGUGGAUCCGGAGCCGAAAGGCGCGCGGAGGG--------------------------------------------UCAUGAAACACGGAAUC--GUGCGCAUUCUA--------------GUCUGUGGGAUGCGCGC---UAAAUUAAAG-CAGAAUC------GCCAUGUCGUCAUCCU-GUCUGUC-GGAGGGCGGUGCGGU----UAAAGCCAAAA--GACAA-ACUACGCA-UGUAG----------------------AUCCGGUGGUCU------AGGUACUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Acthi_ferr1 Xanthomonadales Xylel_fast1 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC--CGAGG-GGGCCGCUUU-CCUCGUAAAUCC---------AGCAGC---AAACUUAUAGUUGCCAACGAAGACAAC---------------------------------------------------------UUCGCUGUAGCCGCUUAA--------------------------GGCUUAAGC-------------------------CUCGAAACUGCUUGUG------------------UCCGUGCUCGCAG-CGUAGAG----------------------------------------------------------UCAUCAUCACGGAACC--GCUGAGACGUGGCC-----------GUCUGCCCAUCCUCGGU---UAAAUCUA--GCAGAC-UG------GUUUCCGGGUGCGCUUUGCCUGUCGU-GCUGCCCGGCGAC----GAGACCUA---ACGGCGAGGAUAAGCA-UGUAG----------------------GGCCGGGGAUGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast1 Thiotrichales Franc_tula1 GGGGGCG----AAUAUGGU--UUCGACAUGAAUGUC-----AAAAUCU-AAGGUGCAUGC--CGAGG-AAGUACCGUAACCUCGUUAAUA-------ACAGUACAAAUGCCAAUAAUAACUGGCAACAAAAAAGCA---------------------AACCGCGUAGCGGCUAACGACAGCAACUUUGCUGCUGUUGCUAAAGCUGCCUAG--------------------------UCUAGCUUAAUAAUCUAGAUGCGC----------ACGGAUAUGAUAGUCUU----------------UCUUAUGACACUAUCUAUACAUCCGUUCA---------------------------------------------------UAUUCCGCAUAAGA----CGGUCUUUGCUUUUU-----------GUCUGGGAGUUAAGGCUG-UAUUUAA----CAGAC-UC------GCUAACUAUUACCCU--GGCUAAUUGGGGAAUAGUCAAGC----UAAACUCAAAUA-GAUUAGCCUAAGCA-UGUAG----------------------AUCCAAAGAUCU------AGAGUUUGUGGAC-GCGGGUUCAAAUCCCGC-CGCCUCCACCA Franc_tula1 Thmic_cruno GGGGAUG-----CACUGGU--UUCGACGGGGAGUAC-----AAAGUUU-AGGAUGCAUGU--CGUGC--CUGAAUGAU-GCACGUAAAUCU-------UUAUUUCA--AUUUGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUAGCGGCUUAA-----------------------UCCCGCUAG----------------------------CGCAGACUGGGACCGUUG--------------UUCGUGGCACCCAGCUCUGUG----------------------------------------------------------UCGACUCACACGGAAUC---GUCGGGUCUUAUGU------------GUUUGGAUAAGACUUGAC-UAAACUUAA--CAAAC-UC------GCUUAAUGUGAUCCCUGCUGGCCGGGCAGCAUUAAGU-------UAAAAUAAUA---GAC-CAAAUAAACA-UGUAG----------------------AGUUUUAAAUGG------AGGCUUCUCGGAC-GGCGGUUCGACUCCGCC-CAUCUCCACCA Thmic_cruno Legionellales Legio_pneum GGGGGCG-----ACCUGGC--UUCGACGUGGGUUGC-----AAAACCG-GAAGUGCAUGC--CGAGA-AGGAGAUC---UCUCGUAAA-UA---------AGACUCA-AUUAAAUAUAAAUGCAAACGAUGAAAAC---------------------------------------------UUUGCUGGUGGGGAAGCUAUCGCUGCCUAA---------UAAGCACUUUAGUUAAACCAUCACUGUGUACUGGCCAAUAAACCCAGUAUCCCGUUCGACCGAGCCC-----------------GCUUAUCGGUAUCGAAUCAACGG--------------------------------------------------------UCAUAAGAGAUAAGCUA--GCGUCCUAAUCUA--------------UCCCGGGUUAUGGCGC---GAAACUCA---GGGAAUC------GCUGUGUAUCAUCCU--GCCCGUC--GGAGGAGCCACAGU----UAAAUUCAAAA--GACAAGGCUAUGCA-UGUAG----------------------AGCUAAAGGCAG------AGGACUUGCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Legio_pneum Pseudomonadales Psmon_aerug GGGGCCG-----AUUAGGA--UUCGACGCCGGUAAC-----AAAACUU-GAGGGGCAUGC--CGAGCU-GGUAGCAG-AACUCGUAAAUUCG-------CUGCUGCA---AACUUAUAGUUGCCAACGACGACAAC---------------------------------------------------------UACGCUCUAGCUGCUUAA---------------------------UGCGGCUAG------------------------CAGUCGCUAGGGGAU------------------GCCUGUAAACCCGAAACGACUG---------------------------------------------------------UCAGAUAGAACAGGAUC--GCCGCCAAGUUC-------------GCUGUAGACGUAACGGC---UAAAACUCA-UACAGC-UC--------GCUCCA-AGCACCCUGCCACUCGGGCGGCGCGGAGU-------UAACUCAGUA--GAGCUGGCUAAGCA-UGUAG----------------------AACCGAUAGCGG------AGAGCUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_aerug Aeromonadales Aermo_hydr1 GGGGCUG----AUUCUGGA--UUCGACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGCUAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUGGCAGCUUAA---------------------UAACCUGCGCAGAGC------------------------CCUUCUACCCUAGCAU----------------GCCUGUGUCCUAGGGAA----UCGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GUCAAUUCGUGGCGUGUCUCUCCGCAGCGGGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UGCCAAGGAUGU------AGUAAUUUUGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Aermo_hydr1 Enterobacteriales Buchn_aphi1 GGGGCUG----UUUUUGGA--UUUGACAAAAUUAUC-----AACAAAGUAAAGUGCAUGC--CGAGG--AACGGUUU-GCCUCGAUAA-----------AAGCCGUA---AAAAAAUAAUUGCAAAUAAUAAACAA------------------------------------------------------AACUACGCUUUAGCAGCUUAA---------------------AAAACUGAAUAAAGC------------------------CCUUCCUUCUUAUCCUCC--------------UUCUCUUAGGAUGAGAA--AACAGGAAGG--------------------------------------------------UCAGA---AAAAGAGAAAA-ACGUGGAUAUCA------------AGCUUGACGAUAA-CACGA-AGUAGUUU-UUUCAAGC-UA--------UAUACCUAAUAUGUGUUUUUCCAAAUUAGGUAAU--------GAAUUCAAUAAA-GAAAAAACUAAGCA-UGUAG----------------------GGCUUUAUUAGU------AGAAAUUUUGGAC-GCGGGUUCGAAUCCCGC-CAGCUCCAaaa Buchn_aphi1 Esche_coli1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli1 Yersi_pesti GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGU-G-GCCUCGUAAAA-----------AACCGCA--AAAAAAAUAGUUGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAGCUC--GUGUGGAAACCUU-------------GCCUGGGGUGGAAGCAU--UAAAAC-UAAUCAGGA-UA-------GUUUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGC-------GAAUGUAAU----GAUUGGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_pesti Yersi_frede GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGU-G-GCCUCGUAAAA-----------AACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UACCCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAAACUAAAAGAGCUC--GUGUGGAAACCUU-------------GCCUGGGGUGGAAGCAU--UAAAAC-UAAUCAGGA-UA-------GUUUGUCAGUGGCGUGUCCAUCCGCAGCUGGCCGGC-------GAAUGUAAU----GAUUGGACUAAGCA-UGUAG----------------------UACCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_frede Pasteurellales Haemp_infl1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCGCUCCAGCUUCC---------------GCUCGUAAGACGGGGA--UAACGCGGAG--------------------------------------------------UCAAACCAAAACGAGAUC--GUGUGGAAGCCACC-----------GUUUGAGGAUCGAAGCAC--UAAA-UUGAAUCAAAC-UA-------GCUUAAGUUUAGCGUGUCUGUCCGCA-UGCUUAAGU-------GAAAUUAAA----GACGAGACUAAACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl1 ALPHA-PROTEOBACTERIA Mitochondria Recli_amer1 GGGGAUG----UUUUUAGU-AUUCGACAUAGUGGAAUUUAUUUGUGGAAUUUUUAAAUUUUAUUUUUUUAUCUACUUUUAAGAAGGAUUUUUU****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AAAAACACCUUGUUAAAUAAGUAAAUAAAAAAAAUAAAAUUUAAAUUAUUUUUUUAUAAGAAUGACUAUGGAA-CCGAGGGCGGAUCUCGG-CAUCUCCAuaa Recli_amer1 Jakob_liber GGGGAUG-----AAUUAGU--UUAGAUAUUUAAGUAAUCCAUGAAAAUUCAUCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAUUUUGUAAUAUUGCUUAGAUAAAA-CCAUGGGCAGUACAUGG-CAUCUCCAcca Jakob_liber Caulobacterales Caulb_cresc GGGGCCG------AUCAGC--AUCGACAGACGUG------UAAAGGUGUCUGCUUUCUCU--CGGC---UUGGCCC----ACCGUU-UC-----------GGGCC-----UUUAUCUAAAUGCGAACGAUAACUUC------------------------------------------------GCUGAAGAGUUCGCCGUCGCUGCGUAA--------------------UGCGGUGCAGGUGAAUUCGCC-------------------UCUUAAGU------------------------CCUAG-GGGUUCAGA-----------------------------------------------------------------------UCC-CUAGGCG--GGGCCC-------------------GGAGGGA-GCCU------GCCAACAGAA-UCCCUCCACCU****************************************************GUCCGGCUUCGGCCGAACUAUGGG-GAUAA----------------------ACGCGCACGUAA-----UAAGCGGACUGGAC-CCGGGUGCGAUUCCCGG-CGGCUCCACCA Caulb_cresc Rhizobiales Agrbm_tume1 GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU--CGGC--AUGAUACC----GCCGUUAUC-----------GGGUCA----CAAGUGUAGUUGCAAAUGACAACAAC------------------------------------------------GCUAAGGAAUACGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAUUCCGCU-------------------CU-AAGU------------------------CCUUACGG-UUAG-C-----------------------------------------------------------------------CCCGUAAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACCU****************************************************GC-CGGGGCAACCCG-GCUAUGGC-GAUAA---------------------ACGGUCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_tume1 Agrbm_vitis GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU--CGGC--AUGAUACC----ACCGUCAUC-----------GGGUCA----CAAGUGUAGUUGCAAAUGACAACAAC------------------------------------------------GCUCAGGGUUACGCUGUCGCUGCUUAA--------------------UCGCGGU-GCCAGAAACCCAAA-------------------CU-AAGU------------------------CCUUACGG-GUAG-C-----------------------------------------------------------------------ACCGUAAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUU****************************************************GCCGGUGCUUGCAUCGGCUAUGGC-AAUAA---------------------ACGGUCGGUGAAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_vitis Mesrhz_loti GGGGGCG-----AAAUAGG--AUCGACGAAGGUG------UAAAGAUCGUACUU-UUGCC--CGGC--AUUGUACC----ACCGUCAUC-----------GGGCUA----AACUUAUAGUUGCCAACGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCUUAA---------------------UGCAGU-GCGAUAGCUUCAAAUC--------------------AAGC------------------------CCUAGGGGU-UCG-C-----------------------------------------------------------------------ACUUCUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUU****************************************************GU-CGGCUUGA-CCG-ACUAUGGC-GAUAA---------------------AUGGGCGAUGAAA-----UAAGCCGUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Mesrhz_loti Rickettsiales Ricke_prowa GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAAGU-UGCUUUUACU--CGGU--AUGAUUCC----ACCGGUGGUUUUUGCCAUAUGGAUCA---AAACAAAGAAACGCAAACGAUAAUCGU------------------------------------------UAUGUAGGUGUUCCAGCUUUAGCUGCAGCUUAA------------------------------GCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GGGAUUU-GCCG------GGCAACAGAAAAA-UCCCAUAC****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_prowa BETA-PROTEOBACTERIA unclassified Betaproteobacteria Tremb_prin1 GGGGAUG-----ACAGGGA--UUCGACACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAAC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCAAGUAAUAGG------------------UUCACCAUUGUGGCUAACGAUUGCAUCGACGCGUUAGUCAGAAGAGCAGUGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGGU-ACACUGAGGGACUAGGCUGACGG-UCAUAGUGCGACUGUAAACAAAGCA-UGUUG----------------------UGCACCCCACA------CCUCCCUGCUGGAC-GUGGGUUCAAUUCCCAC-CAUCUCCAggc Tremb_prin1 Neisseriales Neiss_gono2 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGU----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCAGCCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_gono2 Rhodocyclales Decmo_aroma GGGGGUG----UAC-UGGU--CUCGACAGGGCGGAC------AAAGGUGCGCAGGCAACU--CGUC---AGGCGAUC---GACGUUAAU-----------GAAGCA---AAUCC-AUAAUUGCCAAUGAUGAGCAA---------------------------------------------------------UUCGCUAUUGCCGCCUAA----------------------AAACGGUUAGC---------------------------CGGGGCU--------------------------GCUAG-------------------------------------------------------------------AGCCUUGUUAC-CAAAGAUAGC----CGGCGGGGACUUCG------------------GUCCCCGUCGUCA*******************************************************************************************AUGGU-UGUAA--------------------UUCCGGCAAUCUGG------AGGCGUUCUGGAC-AGGGGUUCGAUUCCCCU-CACCUCCACCc Decmo_aroma Burkholderiales Comam_testo GGGGCCG----AUUCUGGA--UUCGACGUGGGUUCG-----GGACCGGUGCGGUGCAUGU--CGAGC-UUGAGUGAC--GCUCGUAAAUCUC--------CAUUCA---AAAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA-----------------------UCCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUAGUGGGCUGG----GCAAGGGGGUA----GCAA----UACC---------------------UCCCGGCUGCAAGGGAAU-UUUCAUUAGCUG--GCUGGAUACCGG-------------GCUUCUUGGUAUUUGGC----GAGAUUUUAGGAAGC-UG------GCUACCCAAGCAGCGUGUGCCUGCGGGGUUUGGGUGGU---GAGAU--UUAAAA---CAGAGCACUAAACA-UGUAG----------------------AUCUGUCCGGCG------AAGGCUUACGGAC-GCGGGUUCAAUUCCCGC-CGGCUCCANNN Comam_testo Burkh_pseud GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUGUCCGGC-------------GUCACGACGGACAGGUC----GAAAA-UCAAGUGAA-UC------GCCGUAA-CGGAGCGUGUUCGUCCGCGACG-UCACGGU---UAAAU---CAAAU---GACAGAACUAAACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_pseud Borde_pertu GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGCUCAGGGCAUGC--CGAGC--ACCAGUAA--GCUCGUUAAUCC---------ACUGGA---ACACU-ACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA------------------------GCGGUGAGC---------------------------CGCUGCACUGAUCU-------------------GUCCUUGGGUCAG-GCGG--------GGGAAGGCAACUUCCCA---------GGGGGCAACCCC-GAACCGCAGCAGCGACAU-UCACAAGGAAUC-GGCCACCGCUGGG-------------GUCACA-CGGCGUUGGU----UUAAA-UUACGUGAA-UC------GCCCUGG-UCCGGCCCGUCGAUCGGCUAAGUCCAGGGU---UAAAU--CCAAAUA--GAU-CGACUAAGCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_pertu OTHER PROTEOBACTERIA Deltaproteobacteria Geobr_sulfu GGGGGUG-----UACAGGU--UUCGACGGGGAUAGG------AAGCUGAUGGUUGCAUGC--CGAGG-UCCGGGCUG-GCCUCGUUAAAA----------AGCCCGGG--GCGAAUUACACGCCGAUAAU---UAC------------------------------------------------------GACUACGCUGUAGCAGCUUAA---------------------UAACCUGCUAC----------------------------CGAUCCGCUGAGCCU------------------CUCCCACGGGUGAAGAUGGAUCG------------------------------------------------------UCAUUUUA-GUGGGAUA----GUUGCGGGGAGGG-------------UCCAC--GGCCCCAAGGCGAAACCUUAGUGGA---AUC-----GCUUCCCGGAAAUCCCUGCCAGGGGAGAG--UCGGGCGGC-----UAAAUCAAA----UCCUGGUAUAAGCA-UGUAG----------------------ACGCCUUCGGUGU-----AUGAUCUUCGGAC-GCGGGUUCGACUCCCGC-CACCUCCACCA Geobr_sulfu Epsilonproteobacteria Helcb_pylo2 GGGGCUG-----ACUUGGA-UUUCGACAGAUUUCUU------GUCGCACAGAUAGCAUGC--CAAG---CGCUG------CUUGUAAAA-------------CAGCA--ACAAAAAUAACUGUAAACAACACAGAU---------------------------------------------UACGCUCCAGCUUACGCUAAAGCUGCGUGA---------------------GUUAAUCUCCUUUUGGAGC--------------------UGGACUGAUUAGAAU-----------------UUCUAGCGUUUUAAUCGCUCCA--------------------------------------------------------UAACCUUAA-GCUAGACGC--UUUUAAAAGGUG--------------GUUC--GCCUUUUAAAC--UAAGAAACAA-GAAC--UCUUGAAACUAUCUCAAGGUUUUAGAAAGUUGGACCAGAGCUAGUUUUAAGGCUAAAAAACCAACCAAUUUUCUAAGCAUUGUAG----------------------AAGUUUGUGUUU-AGGGCAAGAUUUUUGGAC-UGGGGUUCGAUUCCCCA-CAGCUCCACCA Helcb_pylo2 GRAM-POSITIVES FIRMICUTES: Clostridia Clost_botul GGGGGCG-----CAAUGGU--UUCGACGGGGGCAAA-----UUGCUCCUGGGAAGCGAGU--CGAAGGG-AUCCUGUA-CCUGCGUUAAAAAA-------CUGGGAA-CUUAAAUAUAAUUGCAAACGAU---AAU---------------------------------------------------------UUUGCAUUAGCUGCCUAA---------------------UAGUUGCAGCU----------------------------CGUCAG--CCUAAGAG------------------UCCCAC-GACUUAGGGU-CUGGCGUCGACA-------------------------------------------------------GUGGGGAA-----CCGAGUCUUACAA---------AGCUUUGAGUAAGGAACGG--AAUUAA-----UGAAGCUA--------CUGAAUCUAGGAGCCUGUUUAUCGGCGCUUAGAGGAGG---GAAUGUAAAAG----GAU-AAACUGCACU-CGGAG-----------------------AUGCCCAGGGG----UUGCUGCUUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACCA Clost_botul Destb_hafni GGGGGUG-----CACUGGC--UUCGACGGGGGUCGC-----AAAAUCGCUUGGCGCAUGC--CGAGG-GGUAGCUUU--CCUCGUAAAAC----------AGCUGC---AAAACUCUAGUUGCCAACGACGACNAAC--------------------------------------------------------UACGCUCUCGCCGCUUAA------------------GGCGUAAGC---------------------------------CCCGAAACUGCUUGU------------------GUCCGUGCUCGCAGCGUA--GGGUCACUAU-------------------------------------------------------CACGGAAUC----GCCGGGAGCGGCC----------GCCUGCCAGCUCCCG----UUCAACCUAUA--GCAGGC-UG------GUCCUUGGAUGCGCUUCGCGCGCCGUGCUGUCCCGGGAC---GAGAUCUA------ACGGAGCGCUAAGCA-UGUAG-----------------------UGCCGGGGAUG-----GAGUGCCUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Destb_hafni FIRMICUTES: Mollicutes Mespl_floru GGGGAUG-----UCCUGGU--UUCGACAGGAUACUC-----UGGUCAUAUAAUAGCA-GU--GGUGUGGUAGACCAUA--AUACUUCUA-----------GGUUUG--------AUAAAAUGCAAACAAAAACGAA---------GAAAACACAAACGAAGUUCCAACAUUUAUGUUAAAUGCUGGACAAGCAAAUUACGCUUUCGCUUAA------------------------UUUGACUUAAAU------------------------ACAAAUAUACGUUUGGCAAUUUUUAAUAGUC--UUGGAAU-CUGUUAAUUAUUGU-ACAUACCA------------------------------------------------------AUUCCAAUA------GAAAUUAUGA----------UCGUAAUAAAUAAUUUU-----GAAACUCA--AUUACGGAUG------UUAUAUUAGUCUUUUGAUAAUUUUAUUUAAUAUAG-------CAAAUUAG------AAAAUUAUCUAAAC--UGUAG-----------------------AAUUUAUAUGA----UUCGGUAUUUUGGAC-GUGGGUUCGAUUCCCAC-CAUCUCCACCA Mespl_floru Mycpl_capri GGGGAUG-----UCAUGGA--UUUGACAGGAUAUCU-----UUAGUACAUAUAAGCA-GU--AGUGUUGUAGACUAUA-AAUACUACUA-----------GGUUUA--------AAAAAACGCAAAUAAAAACGAA------GAAACUUUUGAAAUGCCAGCAUUUAUGAUGAAUAAUGCAUCAGCUGGAGCAAACUUUAUGUUUGCUUAA------------------------UAACUACUAGUUUA----------------------GUUAUAGUAUUUCACGAAUUAUAGAUAUU----UUAAGCU-UUAUUUAUAACCG-UAUUACCCA------------------------------------------------------AGCUUAAUA------GAAUAUAUGA----------UUGCAAUAAAUAUAUUU-----GAAAUCUA--AUUGCAAAUG-------AUAUUUAACCUUUAGUUAAUUUUAGUUAAAUAU-------UUUAAUUAG------AAAAUUAACUAAAC--UGUAG-----------------------AAAGUAUGUAU----UAAUAUAUCUUGGAC-GCGAGUUCGAUUCUCGC-CAUCUCCACCA Mycpl_capri FIRMICUTES: Bacillales Bacil_subti GGGGACG-----UUACGGA--UUCGACAGGGAUGGAUC----GA-GCUUGAGCUGCGAGC--CGAGA---GGCGA----UCUCGUAAACA-----------CGCA---CUUAAAUAUAACUGGCAAAACUAACAGU---------------------------------------------UUUAACCAAAACGUAGCAUUAGCUGCCUAA------------------UA--AGCGCAGCGA----------------------------GCUCUUCCUGACAUU-------------------GCCUAUGUGUC--UGUGAAGAGCACAUCCAA------------------------------------------------------GUAGGCUAC---GCUUGCGUUC-CC------------GUCUGAGAACG--UAAGAAGAGAUGAA----CAGAC-UA----GCUCUCGGAA---GGCCC-GCCCGCAGGCAAGAAGAUGAGU---GAAACCAUAAAUA---UGCAGGCUACGCU-CGUAG-----------------------ACGCUUAAGUA---AUCGAUGUUUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuac Bacil_subti Stapc_aure1 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU--CGGAG--GGUUGU----CUUCGUCAUCAACACA----CACAGUU-----UAUAAUAACUGGCAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCCUAA------------------UC-GCACUCUGC------------------------------AUCGCCUAACAGCAUU------------------UCCUAUGUGCUGUUAACGCGAUUCAACCUUA------------------------------------------------------AUAGGAUAU---GCUAAACACUGCC------------GUUUGAAGUCUGUUUAGAAGAAACUUAA--UCAAAC-UA----GCAUCAUGU----UGGUU-GUUUAUCACUUUUCAUGA-UGC---GAAACCUAUC------GAUAAACUACACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUUUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure1 FIRMICUTES: Lactobacillales Leuno_mesen GGGUCUG----UUUUUGGAA-UUCGACAGGUCGUUUA-----GA-GCAUUGAUUGCGUUU--CGCC---AUCCG------GGCGCAAAA------------CGGG-CAG-AAAUUUUAACUGCAAAAAACGAAAAC------------------------------------------------------UCUUUCGCUAUCGCUGCCUAA------------------AAACCAGUGAUGCGUA--------------------------GCUUAAUCUUGGUU--------------------GCUGGCGUCUGAGGUUAGGCCAUAAAAG---------------------------------------------------------GCCAGAU-C---GUACUGCUUCUUAC-----------AUCUGGAAAAGCAGUAUUAAAUCAA-----UCAGGU-UA----GUUAUAUUGAAG-AGCCUUGAGCUAUGGCAGAC-AAUAUAAU--GAACUACAAAUA----AUAGCCCUAUAAA-CGUAG-----------------------AUAUUGGUGUA----UCGGGCGAUUUGGAC-AGGGGUUCGACUCCCCU-CAGAUCCAuuu Leuno_mesen Entco_faes1 GGGGGCG-----UUACGGA--UUCGACAGGCAUAGUU-----GA-GCUUGAAUUGCGUUU--CGUAG-GUUACGG----CUACGUUAAA-----------ACGUUACAGUUAAAUAUAACUGCUAAAAACGAAAAC---------------------------------------------------AAUUCUUUCGCUUUAGCUGCCUAA------------------AAACCAGCUAGCGAA---------------------------GAUCCUCCCGGCAUC-------------------GCCCAUGUGCUCGGGUCAGGGUCCUAAUCGAA-----------------------------------------------------GUGGGAUAC---GCUAAAUUUUUCC------------GUCUGU--AAAAUUUAGAGGAGCUUAC----CAGAC-UA----GCAAUACAGAA--UGCCU-GUCACUCGGCACGCUGUAAAGC---GAACCUUUAAAU----GAGUGUCUAUGAA-CGUAG-----------------------AGAUUUAAGUG----GCAAUAUGUUUGGAC-GCGGGUUCGACUCCCGC-CGUCUCCAuuu Entco_faes1 Strpc_pyog1 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUGUUUUGCGUCC--CAUC----GGCA------GAUGUAAAU------------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAC------------------------------------------------------UCUUACGCUUUAGCUGCCUAA------------------AAACCAGCUAGCGU----------------------------GACUUCUACAAGAUU-------------------GCUUGUGUCCUGUUAGAAGUCUCAAAAUA--------------------------------------------------------GCAAGCUAC---GGUUACGAAAUU-------------GUCUAG--UUUCGUGACA-AGAGAUUG---AUAGAC-UC----GCAA-ACUAAU--GGCUUGAGUUAUGUGUCUUUAGUUUGU----UAAAUGAAG------ACAUAACCUAUGGA-CGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuca Strpc_pyog1 Laccc_lact1 GGGGGCG-----UUACGGA--UUCGACAGGCAUUGU------CGCGCAUGAACUGCAACU--GCUGA---GGGA-----UCAGGAUAAUC-----------AUCCGCAGAUAAAUAUAACUGCUAAAAAUAAUACA---------------------------------------------------CAAACUUACGCAAUGGCAGCCUAA------------------ACAGCACCAUGCGU----------------------------GCCUGAUUUUUGCUC-------------------UCUGAUGGCAAUUUGACGGCCUAAACUUUUA------------------------------------------------------GUCAGAUAC---GUUGUUGUGGA--------------GGCUUG--ACGCAGCAAA-AGAGAUUU---AAAGCC-CC----GCAAAAUGUCGC-UGUUUGAGACUGGCUUUGGCAUUUUGU----UAAAUUUGA------GAAAGUCCUAUGGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGGGGUUCGACUCCCCU-CGCCUCCAuug Laccc_lact1 ACTINOBACTERIA Coryn_dipht GGGGCUG----AUUUUGGU--UUCGACUGCGUGCAUU-----AAGCUAGGGGAAGCGUGC--CGGUGCAGGCUAGAGACCACCGAUUUUAAG-------CGUCGUAGC-AAAUAUAUAAGCGCAGAGAACACUCAG---------------------------------------------------CGCGACUACGCCCUCGCUGCCUAA------------------UUUGCAGCGACCUGCGUGUC----------------------UGUCAGCCUAGAUUC------------------GUCUCUGGUUUAGUGUCUGGCAUCGAUUA---------------------------------------------------------AGAGACUU----GCUGGUUUGUUGU------------GUCAACGGGGCAAACUGGGAC--UUUCA-CCGAUGACUG------GGCUCAUCAUCCGGGUGUGUUCGUCCAAGCCGGAGAGCC----GAGUAGAGAUCCACGCGCGAACUGCGCA-CGGAG-----------------------AAGCCCUAGCG-----AGGUGACGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACCA Coryn_dipht Mycbm_tube1 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-GACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUCCUCGGGACAACCACA----GCGACUG------GGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_tube1 Mycbm_afric GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-GACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUCCUCGGGACAACCACA----GCGACUG------GGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_afric Stmyc_coeli GGGGAUG------AUCGGU--UUCGACAGCGGCUGUC-----GAAGCAGGGGAAGCGUGU--CGAGGAAGCGGCCAUGAUCUCGUAAACCAC-------AGGCCG-----AAAAAAUAAUCGCCAACACCAAGCGC---------------------------------------GAUUCCUCCCAGCAGGCCUUCGCCCUCGCUGCCUGA---------------UCUCAGGUAGCGAAGCGAGCCUCCUACUAAGGGAG----------UGUCAGCCCGGGGCU------------------GUUCCCGACCCGGAUCCUGGCAUCAGCUA---------------------------------------------------------GGGGACUAA---ACCUUGAUCCC--------------GGUCACGGGGUGAAGAGGGAAACCAAACA---GUGACUG------GGCCCGU--CGGAGACUUGUCCGCGUGAUCUCCGGGGCC----GAGAAAAU-CGAA---GCGGACUGCACA-CGGAG-----------------------AAGCCCUGAUU-----CCGCACCGUUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACga Stmyc_coeli Stmyc_livid GGGGAUG------AUCGGU--UUCGACAGCGGCUGUC-----GAAGCAGGGGAAGCGUGU--CGAGGAAGCGGCCAUGAUCUCGUAAACCAC-------AGGCCG-----AAAAAAUAAUCGCCAACACCAAGCGC---------------------------------------GAUUCCUCCCAGCAGGCCUUCGCCCUCGCUGCCUGA---------------UCUCAGGUAGCGAAGCGAGCCUCCUACUAAGGGAG----------UGUCAGCCCGGGGCU------------------GUUCCCGACCCGGAUCCUGGCAUCAGCUA---------------------------------------------------------GGGGACUAA---ACCUUGAUCCC--------------GGUCACGGGGUGAAGAGGGAAACCAAACA---GUGACUG------GGCCCGU--CGGAGACUUGUCCGCGUGAUCUCCGGGGCC----GAGAAAAU-CGAA---GCGGACUGCACA-CGGAG-----------------------AAGCCCUGAUU-----CCGCACCGUUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACnn Stmyc_livid CYANOBACTERIA/PLASTIDS CYANOBACTERIA: Gloeobacteria Gloeo_viola GGGGAUG-----UACUGGC--UUCGACAGGGCAAUUAGAGCGUAACUGAAGCC-----------------UGCUC----GGUUA----------------GAGCAAA-----AAACCAAGUGCUACUAACAACGUA---------------------------------------------GUUCCCUUCGCUCGCGCC--CGCGCUACUGUCGCG---GCCUGAGUAA------------------------------------------GGCGGGGUUG-------------------------GUAGA-UAACCUUGUAAACC--------------------------------------------------------------AAAACUACCCAA-AAGGCCCCUUCG--------------------------GGGGCCUU-----------------UUUGCU*******************************************************************************************************ACUAGGGUGCGUGAUCGGCUGUUCUGGAC-AGGGGUUCGAUUCCCCU-CAUCUCCACCA Gloeo_viola CYANOBACTERIA: Chroococcales Syncoc_8102 GGGGCUG-----CAAUGGU--UUCGACGGGGCAUGAGGAGGGUGACUGAAGCC-----------------UGCUC----GGUGA----------------GAGCAAA-----CCCGUAACUGCGAACAACAUCGUU---------------------------------------------CGUUUCUCCCGUCACGCA-----GCCCCUGUUGCU---GCCUGACC--CUUAGG------------------------------------GGAGAUGGGGUGA----------------------AGUCA-GCCUUAUCACCC----------------------------------------------------------------AAA-UGACUCAU--GGGGGCUGGAA--------------------------GGCCCCU------------------CAAACC*******************************************************************************************************ACUAGGUGAUCCACACCAGUGUUUCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuc Syncoc_8102 Synco_elong GGGGCUG-----UAAUGGU--UUCGACGUGUUGGUGAA--UCCUUCACCGUGAUUCAGGC--CGAGAG-GGAGUCCA-CUCUCGUAAAU-CC-------AGGCUCAA--CCAAAAGUAACUGCGAACAACAUCGUU---------------------------------------------CCUUUCGCUCGUAAGGCU-----GCUCCUGUAGCU---GCUUAAAC----------------GCCACAAACUUUCUGGCUCGAGC-----GUCUAGUCGUAGAC--------------------UCCGUUAAUACGCCUAGAC---------------------------------------------------------UUAAACCCCC-AACGGAUGCUCGAGU-GGCGGC-------------CUCAGGU-CCGUCCUCUCGCU-AAGCAA-AAACCUGAGC----------------AUC-CCGCCAACGGGGAU--AAUCGUUGGCUCCCGCACAGUGGGUC-AACCGUGCUAAGCC-UGUGA----------------------ACGAGCGGAAAGUU-ACUAGUCAAUGCGGAC-AGCGGUUCGAUUCCGCU-CAGCUCCAuuu Synco_elong Syncys_6803 GGGGCCG-----CAAUGGU--UUCGACAGGUUGGCGAA--AGCUUGCCCGUGAUACAGGU--CGAGAG-UGAGUCUC-CUCUCGCAAAUCAA-------AGGCUCAA--AAAAAAGUAACUGCGAAUAACAUCGUC---------------------------------------------AGCUUCAAACGGGUAGCCAUAGCAGCCUAGUCUGUAAAAGCUACAUUU--------------UCUUGU-----CAAAGACCGUUU-----ACUUCUUUUCUGAC--------------------UCCGUUAAGGAUUAGAGGU------------------------------------------------------------UAACCCC-AACGGAUGCUUUGUUUGGCUCUU------------CUCUAGUU-AGCUAAACAAUC-AAGACUCAGACUAGAGC----------------AUC-CCACCAUCAGGGAU--AAUCGAUGGUCCCCGUCCU-AGGGCU-AGAAGGACUAAACC-UGUGA----------------------AUGAGCGGAAAGUU-AAUACCCAGUUUGGAC-AGCAGUUCAAUUCUGCU-CGGCUCCAuuu Syncys_6803 PLASTIDS: Viridiplantae Mesos_virid GGGGUUG-----AAAUGGU--UUCGACGUUUUAGUAU-AUAUC--UUCUUACAAGCAAGU--CGAGA-AUGAACCAA--UCUCGUAAAC--------UUGAGUUCA--AUUGCAAAUAAAUGCUAACAAUAUUUUA------------------------------------------CCUUUUAAUCGUAAGACAGCCGUAGCUGUUUAAAAGUUUUUUGAUAACUUCGAGCAUUUUUGAUUUGUUAAAUACAAUUGUUA--UAAAACAAAUUAAAUAAUAGUU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUGUUUCUUUACAAAUAAUGUAGAAAUAAUUUUUUUUAGCUUUUCAAGCUCCAGCUUUGUGGAUUAGCAAAGCUAAACU-UGUGAAUA-----------------------CAAAGAAGAGAUCAAACUAAAGCGGAC-GCGGGUUCAAAACCCGC-CAGCUCCAuaa Mesos_virid PLASTIDS: Glaucocystophyceae Cyanp_parad GGGGCUG-----UUUAGGU--UUCGACGUUUUUUUCUAAUUAU--GUUUGUUAAGCAAGU--CGAGGAUUUGUUCUA--UCUCGAAAAUCA---------AGAAC-UCUCAAAAUUUAAACGCAACUAAUAUUGUA------------------------------------------CGUUUUAACCGUAAAGCAGCUUUCGCUGUUUAAUAAUUACUUUUAAUUUAAAAACCUAAUUUUUUUAGGAAUUUAUUUAUUUAUUGUUUAUCCUGCUUAAUGAAUUAAAAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CUAUACU-UGUGA--------------------------AUAAACGCAUAAUUUAAAAAAACGGAC-GUGGGUUCAAAUCCCAC-CAGCUCCACuc Cyanp_parad PLASTIDS: stramenopiles Thala_weiss GGGGCUG-----AUUUGGU--UUCGACAUUUAAAACUUCUUUC-----UAUGUGUCAGGU--CAAAG--UUUGUAUU--CUUUGUAAAAAA-------AUACUAAA---AUACUAAUAAAUGCUAAUAAUAUAAUA------------CCGUUUAUUUUUAAAGCAGUAAAAACAAAAAAAGAAGCAAUGGCUUUAAAUUUUGCUGUAUAG------------------------UUCAUUAACUUAGGUUAUUAAAUAUUUUUUCAUUAUAACU-GGACUUUUCUCUAGUUUAUAGUUUAGAAUAAAUUUAAAUUUUGCAAAACUCGUUCGAAAAUUUUCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CUAAACC-UGUAAACGCA--------------------AAUAC--UAAGAAA--UUUUAGAUGGAC-AUGGGUUCAAUUCCCAU-CAGUUCCAauc Thala_weiss PLASTIDS: Rhodophyta Cydum_calda GGGGCUG------AAAGGAUAUUCGACAUAUUAAUUUCGUGCG----CUAUGAUGCAAGC--CGAGA---AUGCUUA--UCUCGUAAAA-----------AAGCA-GACAAAGAAAUAAAUGCAAACAAUAUUAUU------------------------------------GAAAUUAGCAAUAUUAGAAAACCAGCUCUAGUAGUCUAGCCUGAUUCAGUUAUUUCUAAAUUAUUUAUGUUAUGUUAU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAAGCU-UGUAGU------------------------AACUAUCUAGUGUACAAUUUCUAUGGAC-GUGGGUUCAAUUCCCAC-CAGCUCCACaa Cydum_calda Cysch_merol GGGGCUG------UAAGGU-GUUCGACAUAAGUUGUU------------------GUUAU----------------------------------------------------UCAAUAAUUGCAAAUCAAAUUCUA---------------------------------------CCUUUUUCUAUUCCCGUUAAACAUCUAGCUGUUUAAAUUUAAAGACAAUUUAAAGACAAUCUAAAGACUCAAGAGACAAAAAUUUUAGGUAUUUAGGUAACUUUUAGGUAACUAAGUAAGGAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAAGUA-ACGAA---------------------------------------AACAACUUAUGGAC-GUGGGUUCAAUUCCCAC-CAGCUCCAaug Cysch_merol Porpa_purpu GGGGCUG------CAAGGU--UUCUACAUUGUGAAAAAACAAA-UAUAUGAAAGUAAAAC--GAGCUC-AUUAUUA--GAGCUUU---------------UAGU--------UAAAUAAAUGCAGAAAAUAAUAUU------------------------------------------AUUGCUUUUUCUCGAAAAUUAGCUGUUGCAUAAAUAGUCUCAA--------------UUUUU--GUAAUUC-GAAGUGAUAGACUCUUAUACACUAC-GAAUAUUC-UGUUAGAGUUGCUCUUAAUAAAAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGUAAAAAAAUACAAAUUC-------UUAUGUU-UUUUACCUGAAUUG--AUU-CAAUUUAAGGUUAGUAUUUUUUGAUUUUUACAAUGGAC-GUGGGUUCAAGUCCCAC-CAGCUCCAuca Porpa_purpu PLASTIDS: Cryptophyta Guill_theta GGGGCUG-----AUUUGGA--UUCGACAUAUAAAUUUGCGUGUUUCAUUAUGAAGCAAGU--CAAG---UUUAAUG--AUCUUGUAAAAAA---------CAUUAAA--GUACAAAUAAAUGCAAGCAAUAUAGUU---------------------------------------UCAUUUAGUUCAAAACGUUUAGUCUCUUUUGCAUAAGCAAAAUGUGUUAAUAACUUUCUUAGUAGAAAUUGGAGAAGUUUACUAAGAUUUAUAUUUACUCCAUAAUUAUUUUAAAGAUGGUAAAAAGGUGAUUCAUCAUUUGUAUGUUU--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CUAAACUUUGUGAAAG----------------------AAUAGUGGGCUCC-AUUUAUA-AUGAAC-GUGGGUUCAAAUCCCAC-CAGCUCCAuag Guill_theta VIRUSES MPhage_Bxz1 GGGCCUG-----ACAAGGU--UUCGACUGGUCGAUGG------ACAACUGAACAGCGGGC--GAGUGUUGGCCGCACUUCUACUC---UGAGU------GAACGCGGC--AACUGAUAAACGCAACCGACACGGAU------------GCAACGGUGACCGACGCCGAGAUCGAGGCCUUCUUUGCUGAAGAGGCUGCCGCUCUCGUCUGA-----------------AGGAACCAGCCUGGCUCAGCG----------------------UGCUGCUGUGCAGCGGCCAGGCUUCAUCUCUAACAGCAGCGAACG--------------------------------------------------------------------GACAUGAGGGAGCGCAAACCCUCGUCCCAAACAUCAUGAAUGCGUCGCACGGGCUCCAGCGUCAGGGGCCAGAGGUGGGAAA---------CGGUGUGAAACUCCUGUCCUGGGGAUCACCGACCG-----AUACGCCAAA-----CCAGGACUACGCC-CGUAG-----------------------AACGCAGUGAG-----AAAGACACCAGGAC-AGGGGUUCGAGUCCCCU-CAGGUCCACgu MPhage_Bxz1 BaciPhage_G GGGAUUG-----UUAAGGA--UUCGACAGGGGAAAAU-----AGUAUAAGACAUGAUACU--CGUA----AAGCA-----UACG-------------------------------UUACAUGCUAAGUUAAAUAUA-----------------------------------------------ACUAACAACGAAUUACAAGUAGCCUAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAAUAGGUGCCAAAACAAUAGAGUUGCUCUAACAUCUAUUUGAGGUUCAAAGAUUUGAGCUAUUUCUUACUUUAGAAUAAAGUAAGUGGUGGAGCCUAGAGAAAACGCUGUAGAAACUAACUAUUCAAAUUGUAAAUGGUAUCAAA-------------------------CAAGUGUCUAUAUGAAAGUCUUCUGGAC-GCGGGUUCGACUCCCGC-CAGUUCCAuau BaciPhage_G AQUIFICAE Aquif_aeoli GGGGGCG-----GAAAGGA--UUCGACGGGGACAGGCG-----GUCCCCGAGGAGCAGGC--CGGG----UGGCU-----CCCGUAAC------------AGCCG--------CUAAAACAGCUCCCGAAGCUGAA---------------------------------------------------------CUCGCUCUCGCUGCCUAAUUAAACGGCAGCG-----------------------------------------------CGUCCCCGGUAGGUUU-----------------GCGGGUGGCCUACCGGAGGGCG----------------------------------------------------------UCAGAGACACCCGCUC--GGGCUACUCGGUC------------GCACGGG-GCUGAGUAGCU-GACACCUAACCCGUGC-UA-------CCCUCGGGGA-GCUUGCCCGUGGGCGA-CCCGAGGG------GAAAUCCUGAA----CACGGGCUAAGCC-UGUAG-----------------------AGCCUCGGAUGU-GGCCGCCGUCCUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Aquif_aeoli THERMOTOGAE Thtog_mari1 GGGGGCG------AACGGG--UUCGACGGGGAUGGAGU------CCCCUGGGAAGCGAGC--CGAGG-UCCCCACCU--CCUCGUAAAA----------AAGGUGGG-ACAAAGAAUAAGUGCCAACGAACCUGUU------------------------------------------------------------GCUGUUGCCGCUUAAUAGAUAAGCGGC------------------------------------------------CGUCCUCUCCGAAGUU-----------------GGCUGGGCUUCGGAAGAGGGCG----------------------------------------------------------UGAGAGAUCCAGCCUA--CCGAUUCAG-CUUC-----------GCCUUCCGGCCUGAAUCGG-GAAAACUCAGGAAGGC-UG------UGGGAGAGGACACCCUGCCCGUGGGAGGUCCCUCCCG-------AGAGCGAAAA----CACGGGCUGCGCU-CGGAG-----------------------AAGCCCAGGGGC----CUCCAUCUUCGGAC-GGGGGUUCGAAUCCCCC-CGCCUCCACCA Thtog_mari1 THERMODESULFOBACTERIA Thdsb_commu GGGGGCG-----AAAAGGG--CUCGACGGGGAUAGGUA------GGAUUAAACAGCAGGC--CGUGG-UCGCACCCAA-CCACGUUAAA----------UAGGGUGC--AAAAACACAACUGCCAACGAAUACGCC---------------------------------------------------------UACGCUUUGGCAGCCUAAGCG---UGCUGCCA----------------------------------------------CGCACCUUUAGACCUU-----------------GCCUGU-GGGUCUAAAGGUGUG----------------------------------------------------------UGACCUA-ACAGGCUU--UGGGAGGCUUAAUC-----------GGUGGGG-UUAAGCCUCCCGAGAUUACA-UCCCACC-UG-------GUAGGGUUGCUUGGUGCCUGUGACAAGC-ACCCUAC------GAGA-UUUUCC----CACAGGCUAAGCC-UGUAG-----------------------CGGUUUAAUCUG----AACUAUCUCCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Thdsb_commu DEINOCOCCUS-THERMUS Deinc_radio GGGGGUG-----ACCCGGU--UUCGACAGGGGA-ACUG-----AAGGUGAUGUUGCGUGU--CGAGG--UGCCGUUGG-CCUCGUAAAC----------AAACGGCA-AAGCCAUUUAACUGGCAACCAGAACUAC------------------------------------------------------------GCUCUCGCUGCUUAAGUGAGA------------------------------------------------------UGACGACCGUGCAGCCCG----------------GCCUUUGGCGUCGCGGAAGUCA---------------------------------------------------------CUAAAAAAGAAGGCUA--GCCCAGGCGAUU-------------CUCCAUA----GCCGACGGC-GAAACUU-UAUGGAGC-UAC-----GGCCUGCGAGAACCUGCCCACUGGUGAGCGCCGGCC------CGACAAUCAAA---CAGUGGGAUACACA-CGUAG-----------------------ACGCACGCUGG-----ACGGACCUUUGGAC-GGCGGUUCGACUCCGCC-CACCUCCACCA Deinc_radio Thmus_ther1 GGGGGUG-----AAACGGU--CUCGACGGGGGUCGCCG-----AGGGCGUGGCUGCGCGC--CGAGG--UGCGGGUGG-CCUCGUAAAA-----------ACCCGCA---ACGGCAUAACUGCCAACACCAACUAC------------------------------------------------------------GCUCUCGCGGCUUAAUGACCGCGA---------------------------------------------------C-CUCGCCCGGUAGCCCU----------------GCCGGGGGCUCACCGGAAGCGGGG--------------------------------------------------------ACACAAACCCGGCUA--GCCCGGGGCCAC-------------GCCCUCUA--ACCCCGGGC-GAAGCUUGAAGGGGGC-UCG--------CUCCUGGCCGCCCGUCCGCGGGCCAAGCCAGGAG-----GACACGCGAAA-----CGCGGACUACGCG-CGUAG-----------------------AGGCCCGCCGU-----AGAGACCUUCGGAC-GGGGGUUCGACUCCCCC-CACCUCCACCA Thmus_ther1 CHLOROFLEXI Chlfl_auran GGGGAUG-----CUCUGGU--UUCGACAGGGAGUGAAC------GCCGUAGACUGCAGGU--CGUGC--CGCCC--AG-UCACGUAAAA------------GGGGCA---AGGCAACAACUGCCAACACCAACACU------------------------------------------CGGGCCCAGGCUCGCCUGGCCCUCGCCGCUUAAUAAUAGCGGCG-------------------------------------------------CGCUCGCC--GUAGCUCC----------------CCCGAUGGUUACGGGUCGAGCG----------------------------------------------------------UCAGC-AGUCGGGUGCUCCGGUAACGCCU-------------GCCUGA---GCGUUAUCGG--CUAAGAGAUCAGGC--UG------GCCCAACGGUCGCUUUGCCACUCGUGCGACUGCGGGU-------GAGAUGAAA----CGAGGGGCUAAACC-UGUAG-----------------------AUGUCUGCGGU-----CUAGCUUUCUGGAC-GGGGGUUCGACUCCCCC-CAUCUCCACCA Chlfl_auran Dehco_ethen GGGGACG------CGUGGU--UUCGACAGGGAAGGUAG-----GCUACUGGAUUGCAGGC--UGAGGU-GCCAUCC--ACCUCAUUAAACA---------GGUGGC----AAAAAACAACUGGCGAACGUGAA------------------------------------------------------------CUCGUUCUUGCUGGCUAAAUAAGACAGCA-------------------------------------------------CAUCCUGCUUGGCCC----------------CACCUCAACGGGUCAGGUUUGGGUG----------------------------------------------------------CCGAUUAGUUGAGGUGCCGUUUCCCCAAC-------------GCCGAU---GAGGGGGACG--AAAGAAAUAUCGGC--UG------GUUUGGCUAAAUUAGG-CCGGCAAAAGCUAGCCAGAC-------AAGAUUAAA----UAGACGGAUAAUCC-UGUAG-----------------------UAGAUCCUGGG----UCACCUUUUCUGGACGGGGAGUUCGACCCUCCCCCGUCUCCACCA Dehco_ethen NITROSPIRAE Therv_yello GGGGGCG------AAAGGA--CUCGACGGAGGUAGUG------AGGGCUAAGCUGCAUGC--CGUGG--UUCCUGCCA-CCACGUAAAAC---------AGGUAGGGA---AAACACAACUGCCAACAACGAAUUG------------------------------------------------------------GCACUCGCUGCUUAA--------------------UUAAAAGCAGC-----------------------------CGUCUUCCCAAGUUCUG-----------------CUCUGAGGCUUGGGCAAGGCG-----------------------------------------------------------UCAUAAAUCAGAGCUA-UCCUAAGGCACA--------------AACCCGAUGCCUUAGGG--AGAGCUAA---GGGUUGUA------GGAGCUUAGAGAGCCUGUGGAAGGGCGAGCUAACUUCC------GAAUCCUAAAA---CUUCCACUAAGCA-UGUAG----------------------------AUGCUUAGAAGUAGCACCUUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Therv_yello BACTEROIDETES/CHLOROBI Bacro_theta GGGGUUG------ACUGGA--UUUGACAGCGGGCAGAA-----AUGGUAGGUAAGCAUGC--AGUGGG-UCGGUAAUUUCCACUUAAAUCU--------CAGUUAUC--AAAACUUUAUCUGGCGAAACUAAUUAC------------------------------------------------------------GCUCUUGCUGCUUAAUCGAAUCACAGUAGAUUAG----------CUUAAUCCAGGCACUAGGUGCCAG-GACGAGACAUCACUCGGAA-GCUGUU-------------GCUCCGAAGCAUUCCGGUUCAGUGGUGCA----------------------------------------------------GUAACAUCGGGGAUA--GUCAGAAGCGG---------------CCUC--GCGUUUUUGAUGAAACUUUA---GAGGAUAAG------GCAGGAA--UUGAUG-GCUUUGGU-UCUGCUCCUGCACG----------AAAAUUUAGGCAAAGAUAAGCA-UGUAG----------------------AAAGCUUAUGAU-----UUCCUCGUUUGGAC-GAGGGUUCGAUUCCCUC-CAGCUCCACCu Bacro_theta Cytph_hutch GGGGUCG------ACAGGA--AUUGACAGGUUGAGUGA----UUACGUGUGUAAGCAUGC--AGGCUC-AUGGGAUGAGAGCCUUAAAAGA--------UAGUUCCG----AACAAUAAUUGGCGAAGAAUCUUAC------------------------------------------------------------GCCAUGGCUGCUUAAUUACGAACUAAGUUUGUAAUAAUGAGCGUUGAGUGGAGCUGUUAAGAACAGCACCCGGCCACAUCUCACACGG-CUUCU--------------GUUCUGCGGGCUGUG--AACUGAGAUGUC-----------------------------------------------------GAACAGCAGGACUAGGGGAGUACA-----------------AGUUGCGGGUGCUUC---GCGAAAUUAA--GUAACUAA-------GGUUAUAG-UUGGGU-GCCGGUGA-CCUGCUACAGCUCG----------AAAAUGAACAUCCGGCUAAGCA-UGUAG----------------------AAGAUUCGAUAG----UGGCCUUCUCUGGAC-GAGAGUUCGAAUCUCUC-CGACUCCACCA Cytph_hutch Chlbm_tepid GGGGAUG------ACAGGC-UAUCGACAGGAUAGGUGU-----GAGAUGUCGUUGCACUC-CGAGUUUCAGCAUGGACGGACUCGUUAAACAA------GUCUAUG----UACCAAUAGAUGCAGACGAUUAUUCG---------------------------------------------------------UAUGCAAUGGCUGCCUGAUUAGCACAAGUUAAUUCAGAAGCCAU----------------------------------CGUCCUGCGGUGAAUGC-----------GCUUACUCUGAAGCCGCCGGAUGGCAUAACCCGCGCUUGA---------------------------------------GCCUACGGGUUCGCGCAAGUAAGCUCCGUACAUUCAUG------------CCCGAGGGGGUGUGCGGGUAACCAA------UCGGGAUA-------AGGGGACGAACGCUGCUGGCGGUGUAAUCGGACCAC---------GAAAAACCAACCACCAGAGAUGAG-UGUGG----------------------UAACUGCAUCGA-----GCAGUGUCCUGGAC-GCGGGUUCAAGUCCCGC-CAUCUCCACCA Chlbm_tepid PLANCTOMYCETES Gemma_obscu GGGGGCG-----AUCUGGU--AUCGACCGGGUGUCGGA-----AGUGUUCGGUGGCGUGU--CGUGGUUGAUCAGCUGGCCACGUAAAA----------AGCCGAUC---AAAAUUUAACUGCUGAACCGCAGUAC------------------------------------------------------------UCCCUCGCGGCUUAAGUGCCGAGAGCCGUU---------------------------------------------CUGGCAGCUUC----------------------GCCUGAGAGGUGCUAG-UCCGG---------------------ACGCAAGUCAGGCUCGCGGGAACUCGAGGAGAGGGGACAACCACCCGAUCCGCCUCGGCGGCCGUUCCUGCUAAAAAAAUCUGGCCGAU-AGUUGUGUCGGGGUCCCGCUCGUAGGAACCCGGUAACAACGAACGUGCGGCGGCCCGUUAAACGGUGCGCCGCAG-------------GAAUAUACGAGCUACACA-CGUAG----------------------AUGCCGGCGCGGA-----AGCGCCUCGGGAC-CGGGGUUCGAUUCCCCG-CGCCUCCACuc Gemma_obscu CHLAMYDIAE/VERRUCOMICROBIA Chlap_pneum GGGGGUG-----UAUAGGU--UUCGACUUGAAAAUGAA-------GUGUUAAUUGCAUGC--GGAGGGCGUUGGCUGG-CCUCCUAAAA----------AGCCAAC---AAAACAAUAAAUGCCGAACCUAAGGCU---------------------GAAUGCGAAAUUAUUAGCUUGUUUGACUCAGUAGAGGAAAGACUAGCUGCUUAAUUAGCAAAAGUUGUUAGCUAGAUAAUCUCUAGGUAACC----------------------CGGUAUCUGCGAGCUCC-----------------ACCAGAGGCUUGCAAAAUACCG----------------------------------------------------------UCAUUUAUCUGGUUG--GAACUUACUUUCUCUA---------AUUCUCAAGGAAGUUCGUUC-GAGAUUUU--UGAGAGU-------CAUUGGCUGCUAUAGAGGCUUCUAGCUAAGGGAGUCCAAUG-------UAAACAAUUCUAGAAGAUAAGCA-UGUAG----------------------AGGUUAGCAGGGA-----GUUUGUCAAGGAC-GAGAGUUCGAGUCUCUC-CACCUCCAuua Chlap_pneum Verru_spino GGGGGCG-----UUCUGGU--UUCGACGGAUUGCUAGA------AGUGGAGGCUGCAUGC--CGCGGAUGAUUCGUUGGCCGCGUUACCAAUU------CGGAUCA---AACAAACUAAAUGCGAACUCUAACGAG---------------------------------------------------------CUUGCCCUCGCCGCUUAAUUGACGGUGA--------------------------------------------------CGUUCCUCCAGUGAA-------------------GUCUGUGAAUUGGAGGGGCG------------------------------------------------------------ACUACUUACAGGCUG--GCCAAAAGAGCG-------------GGCGACCGGCUCCGAGGC---GAGAUCUACAGGCCGCU-G-------GGUGGACGGUAUCCUGGCAGUAGGAGACUGGACAUC---------GAGAUCAAAU-UAUUGCCUGAGCA-UGGAG----------------------ACGCUUUCAUGGA-----AGGUGGUUCGGAC-AGGGGUUCAACUCCCCU-CGCCUCCACCA Verru_spino SPIROCHAETES Borre_burgd GGGGAUG-----UUUUGGA--UUUGACUGAAAAUGUU----AAUAUUGUAAGUUGCAGGC--AGAG-----GGAAU----CUCUUAAAAC---------UUCU---------AAAAUAAAUGCAAAAAAUAAUAAC------------------------------------------UUUACAAGCUCAAAUCUUGUAAUGGCUGCUUAA---------------------------GUUAGC---------------------------AGAGGGUUUUGUUGAAUUUG--------------GCUUUGAGGUUCACUUAUACUCUUU----------------------------------------------------UCGACAU--CAAAGCUUG--CUUAAAAAUGUU-------------UUCAAGUUGAUUUUUAGG--GACUUUUAUACUUGAG--A-------GCAAUUUGGUGGUUUGCUAGUAUUUCCAAACCAUAUUGC-UUAA-UA-------AAAUACUAGAUAAGCU-UGUAG----------------------AAGCUUAUAGUAU------UAUUUUUAGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCAuuu Borre_burgd Trepo_palli GGGGAUG-----ACUAGGU--UUCGACUAGGGAUGU-----GGGGUGUUGCGCUGCAGGU--GGAG--UGU-CGAU----CUCCUGAU-----------UCGGCG-----CCUUUAUAACUGCC---AAUUCUGAC------------------------------------------------AGUUUCGACUACGCGCUCGCCGCGUAA-----------------------------UCG----------------------------CGGG-CCUGUGUUUGCGCU---------------GCUCUGAGCGAACAUAUCGG-CCCG----------------------------------------------------ACGCCAA-ACGGAGCUUG--CUCUUACGUUGU-------------GCACGGCGGACGUAGGGG--GACUUUUGU-CUGUGC-UAA------GACUCUGG--CGCGUGCGGUGCAGGCCUAGCAGAGUC--CGACAAACGCAGUAC--GCACCGC-UAAACC-UGUAG----------------------GCGCGCAGCACUC------GCUCUUUAGGAC-GGGGGUUCGAUUCCCCC-CAUCUCCACaa Trepo_palli FIBROBACTERES/ACIDOBACTERIA Fibro_succi GGGGGUG-----CUCUGGU--UUCGACAGGGUUACC------GAAGUGUUAGUUGCAAGUCGAGGUC-UCAGACGAGGGCAACUCGUUAAAAA------GUCUGA----AAAAAAAUAAGUGCUGACGAAAACUAC------------------------------------------------------------GCACUCGCUGCCUAA--------------------------UUAACGGCAACG----------------------CCGGGCCUCAUUCCGC------------------UCCCAUCGGGAUGUACGUCCGG----------------------------------------------------------ACGCAAUAUGGGAUA--GGGAAGUGUCAU-------------GCCUGGGGGCAUCUCCC---GAGAUUUA--CUAGGC-UG------GUCAAACUCCGCGCCG-ACCUUCUUGGGCGUGGAUAAGAC----GAGAUCUU-AAAUACGAAGGGAACACU-UGUAG----------------------GAACGUACAUGG-----ACGUGAUUUUGGAC-AGGGGUUCGACUCCCCU-CACCUCCAgaa Fibro_succi FUSOBACTERIA Fusob_nucl1 GGGGAUG-----CAAAGGU--UUCGACGGGGUUGUGAG------GUUAUAGGUAGCAAGU--CAGGC--UUGUC----GCUGUGAGAGACUA-------AACACA------UCUUUUAGAUGGAAACAAAGAUUAC------------------------------------------------------------GCUUUAGCUGCUUAG------------------------UUCAGCUA----------------------------CACCUUGGAUAACUUAU---------------UCUAUACGGGUUUUUCAAAGGUG---------------------------------------------------------UUGACUAGUAUAGAUCA---CCAUAAAUGAU----------UUCUCUAA----GUUUAUGG-GACAUU----UUAGAGGA-UA---------GUUUUAGUUAGCCCUGUUUACGGGAGUAAUUAUUAC----GAAAUUUAAUA-----GUAAACUAAACU-UGUAG-----------------------AAGCUUAUGG---UCAUUAUGAUUUCGGAC-ACGAGUUCGACUCUCGU-CAUCUCCACCA Fusob_nucl1 DICTYOGLOMI Dicgl_therm GGGGGCG------AUUGGU--UUCGACAGGGAGUACAA----GGAUCAAAAGCUGCAAGC--CGAGG--UGCCGUUA--CCUCGUAAAAC---------AACGGCA-----AAAAAGAAGUGCCAACACAAAUUUA------------------------------------------------------------GCAUUAGCUGCUUAAUUU---AGCAGCUA----------------------------------------------CGCUCUU-CUAACCCG-----------------GGCUGGCAGGGUUAGAAGGGUG--------------------------------------------------------UCAUAAUGAGCCAGCUGC--CCCUUCCGAC---------------UCCCCUA----AGGAAGGG--AAAGAUG-UAGGGGA-UA-----GGUGCUUACAGAAUCCUGCGGGAGGGAGUCUGUAAGUGCC----GAAAAGUUAAAA---CUCCCGCUAAGCU-UGUAG-----------------------AGGCUUUUGAUU----CUUGCUCUCUGGAC-GCGGGUUCGACUCCCGC-CGCCUCCACCA Dicgl_therm UNCLASSIFIED BACTERIA