All tmRNA Alignment 15-Feb-2006 by Kelly Williams for The tmRNA Website, with base-pairing color-coded as in home page diagram. Underline marks the predicted reading frame for the proteolysis-inducing peptide tag. Lowercase marks segments not homologous to tmRNA, intervening segments that are absent in the mature tmRNA, and portions of the expected 3-prime CCA tail that are not encoded in the genome.

GAMMA-PROTEOBACTERIA
Acidithiobacillales
Acthi_ferr1 GGGGGCG------ACCGGC--UUCGACGCAGGUCGC------GAAGCCUUCGGUGCAUGC--AGAGC--UGCGGUUC--GCUCUUAAAACU---------GGUCGCA---GAUUCAUAAUUGCCAACGACAGCAAU---------------------------------------------------------UACGCUCUCGCUGCUUAA----------------------------GCAGUGAG------------------------CCCUCUGCCCGGAUUU-----------------GUCUGUGGAUCCGGAGCCGAAAGGCGCGCGGAGGG--------------------------------------------UCAUGAAACACGGAAUC--GUGCGCAUUCUA--------------GUCUGUGGGAUGCGCGC---UAAAUUAAAG-CAGAAUC------GCCAUGUCGUCAUCCU-GUCUGUC-GGAGGGCGGUGCGGU----UAAAGCCAAAA--GACAA-ACUACGCA-UGUAG----------------------AUCCGGUGGUCU------AGGUACUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Acthi_ferr1
Acthi_ferr2 GGGGGCG------ACCGGC--UUCGACGCAGGUCGC------GAAGCCUUCGGUGCAUGC--AGAGC--UGCGGUUC--GCUCUUAAAACU---------GGUCGCA---GAUUCAUAAUUGCCAACGACAGCAAU---------------------------------------------------------UACGCCCUCGCUGCUUAA----------------------------GCAGUGAG------------------------CCCUCUGCCCGGAUUU-----------------GUCUGUGGAUCCGGAGCCGAAAGGCGCGCGGAGGG--------------------------------------------UCAUGAAACACGGAAUC--GUGCGCAUUCUA--------------GUCUGUGGGAUGCGUGC---UAAAUUAAAG-CAGAAUC------GCCAUGUCGUCAUCCU-GUCUGUC-GGAGGGCGGUGCGGU----UAAAGCCAAAA--GACAA-ACUACGCA-UGUAG----------------------AUCCGGUGGUCU------AGGUACUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Acthi_ferr2
Xanthomonadales
Xylel_fast1 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC--CGAGG-GGGCCGCUUU-CCUCGUAAAUCC---------AGCAGC---AAACUUAUAGUUGCCAACGAAGACAAC---------------------------------------------------------UUCGCUGUAGCCGCUUAA--------------------------GGCUUAAGC-------------------------CUCGAAACUGCUUGUG------------------UCCGUGCUCGCAG-CGUAGAG----------------------------------------------------------UCAUCAUCACGGAACC--GCUGAGACGUGGCC-----------GUCUGCCCAUCCUCGGU---UAAAUCUA--GCAGAC-UG------GUUUCCGGGUGCGCUUUGCCUGUCGU-GCUGCCCGGCGAC----GAGACCUA---ACGGCGAGGAUAAGCA-UGUAG----------------------GGCCGGGGAUGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast1
Xylel_fast2 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC--CGAGG-GGGCCGCUUU-CCUCGUAAAUCC---------AGCAGC---ACACUUAUAGUUGCCAACGAAGACAAC---------------------------------------------------------UUCGCUCUAGCCGCUUAA--------------------------GGCUUAAGC-------------------------CUCGAAACUGCUUGUG------------------UCCGUGCUCGCAG-CGUAGAG----------------------------------------------------------UCAUCAUCACGGAACC--GCUGAGACGUGGCU-----------GUCUGCCCACACUUGGU---UAAAUCUA--GCAGAC-UG------GUUUCCGGGUGCGCUUUGCCUGUCGU-GCUGCCCGGCGAC----GAGACCUA---ACGGCCAGGAUAAGCA-UGUAG----------------------GGCCGGGGAUGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast2
Xylel_fast3 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC--CGAGG-GGGCCGCUUU-CCUCGUAAAUCC---------AGCAGC---ACACUUAUAGUUGCCAACGAAGACAAC---------------------------------------------------------UUCGCUAUAGCCGCUUAA--------------------------GGCUUAAGC-------------------------CUCGAAACUGCUUGUG------------------UCCGUGCUCGCAG-CGUAGAG----------------------------------------------------------UCAUCAUCACGGAACC--GCUGAGACGUGGCC-----------GUCUGCCCACCCUUGGU---UAAAUCUA--GCAGAC-UG------GUUUCUGGGUGCGCUUUGCCUGUCGU-GCUGCCCGGCGAC----GAGACCUA---ACGGCCAGGAUAAGCA-UGUAG----------------------GGCCGGGGAUGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast3
Xylel_fast4 GGGGGUG-----CACUGGC--UUCGACGGGGGUCAC-----AAAAUCACUUGGUGCAUGC--CGAGG-GGGCCGCUUU-CCUCGUAAAUCC---------AGCAGC---ACACUUAUAGUUGCCAACGAAGACAAC---------------------------------------------------------UUCGCUCUAGCCGCUUAA--------------------------GGCUUAAGC-------------------------CUCGAAACUGCUUGUG------------------UCCGUGCUCGCAG-CGUAGAG----------------------------------------------------------UCAUCAUCACGGAACC--GCUGAGACGUGGCC-----------GUCUGCCCACCCUUGGU---UAAAUCUA--GCAGAC-UG------GUUUCCGGGUGCGCUUUGCCUGUCGU-GCUGCCCGGCGAC----GAGACCUA---ACGGCCAGGAUAAGCA-UGUAG----------------------GGCCGGGGACGG------AGUACUUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xylel_fast4
Xanmo_camp1 GGGGGUG-----CACUGGU--UUCGACGGGGGUCGC-----GAAGUCGCUUGGCGCAUGC--CGAGG-GGGCAGCUUU-CCUCGUUAAUCC---------AGCAGC---AAACUUUUAGUUGCCAACGACGACAAC---------------------------------------------UACGGUUCGGACUUCGCUAUCGCCGCUUAA--------------------UUGGCUUUAGUUGUAGUUCUACAGCCGCCUAAGGCGAACCCCCGAAACUACUUGUG------------------CCCGUGCUCGUAGAUGUAGGG----------------------------------------------------------UCAUUAUCACGGAACC--GCCGGUA-GUGGCU-----------GCCUGUCAGCUAUCGGU---UAGAUCAA--GCAGGC-UG------GUUUUCAGGUGCGCUUUGCCCGCCGU-GCUGCCUGGGAAC----GAGAUCUA---ACGGA-GGGAUAAGCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCUUCCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xanmo_camp1
Xanmo_camp2 GGGGGUG-----CACUGGU--UUCGACGGGGGUCGC-----GAAGUCGCUUGGCGCAUGC--CGAGG-GGGCAGCUUU-CCUCGUUAAUCC---------AGCAGC---AAACUUUUAGUUGCCAACGAUGACAAC---------------------------------------------UACGGUUCGGACUCCGCUAUCGCCGCUUAA--------------------UUGGCUUUAGUUGUAGUUCUACAGCCGCCUAAGGCGAACCCCCGAACCUACUUGUG------------------CCCGUGCUCGUAGGUGUAGGG----------------------------------------------------------UCAUUAUCACGGAACC--AUCGGUA-GUGGCU-----------GCCUGUCAGCUACCGGU---CAGAUAAA--GCAGGC-UG------GUUUCCAGGUGCGCUUUGCCAACCGU-GCUGCCUGGAAAC----GAGAUCUA---ACGGA-GGGCUAAGCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCUUCCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xanmo_camp2
Xanmo_axono GGGGGUG-----CACUGGU--UUCGACGGGGGUCGC-----GAAGUCGCUUGGCGCAUGC--CGAGG-GGGCAGCUUU-CCUCGUUAAUCC---------AGCAGC---AAACUUUUAGUUGCCAACGAUGACAAC---------------------------------------------UACGGUUCGGACUUCGCUAUCGCCGCUUAA--------------------UUGGCUUUAGUUGUAGUUCUACAGCCGCCUAAGGCGAACCCCCGAACCUACUUGUG------------------CCCGUGCUCGUAGGUGUAGGG----------------------------------------------------------UCAUUAUCACGGAACC--AUCGGUA-GUGGCU-----------GCCUGUCAGCUACCGGU---CAGAUAAA--GCAGGC-UG------GUUUCCAGGUGCGCUUUGCCAACCGU-GCUGCCUGGGAAC----GAGAUCUA---ACGGA-GGGCUAAGCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCUUCCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xanmo_axono
Xanmo_oryza GGGGGUG-----CACUGGU--UUCGACGGGGGUCGC-----GAAGUCGCUUGGCGCAUGC--CGAGG-GGGCAGCUUU-CCUCGUUAAUCC---------AGCAGC---AAACUUUUAGUUGCCAACGAUGACAAC---------------------------------------------UACGGUUCGGACUUCGCUAUCGCCGCUUAA--------------------UUGGCUUUAGUUGUCGUUCUACAGCCGCCUAAGGCGAACCCCCGAACCUACUUGUG------------------CCCGUGCUCGUAGGUGUAGGG----------------------------------------------------------UCAUUAUCACGGAACC--AUCGGUA-GUGGCU-----------GCCUGUCAGCUACCGGU---UAGAUAAA--GCAGGC-UG------GUUUUCAGGUGCGCUUUGCCAACCGU-GCUGCCUGGGAAU----GAGAUCUA---ACGGA-GGGCUAAGCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCUUCCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Xanmo_oryza
Uncul_rice4 GGGGGUG-----CAUUGGU--UUCGACGGGGGUUGU-----GAAGUCGCCUGGCGCAUGC--CGAGG-GGGUAGCUUU-CCUCGUAAAUCC---------AGCUGC---AAAACUCUAGUUGCCAACGACGACAAC---------------------------------------------------------UACGCUCUGGCCGCUUAA--------------------------GGCCUAAGC-------------------------CUCGAAACCGCUUGUG------------------UCCAUGCUCGCGG-UGUAGAG----------------------------------------------------------UCACUAUCAUGGAAUC--GCGCUGG-ACGGCU-----------GCCUGUCAGUCCGGCAC---UAGAACACA-ACAGGC-UG------GUUCCCGGAUGCGCUUCGCGCACCGU-GCUGUUCGGGGAC----GAGAUCCA---ACGGU-GAGCUAAGCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCCUUCGGAC-GGCGGUUCAAUUCCGCC-CACCUCCACCA Uncul_rice4
Uncult_U01a NNNNNNN-----NNNNNNN--NNNNNNGCUGGUAAC-----GGAAUCCG-AAGUGCAUGC--CGAGG--UGUCAUGU--CCUCGUAAAACC---------UGUGACA--ACCAAGCUAGUUGCGAACGACUCCAAC---------------------------------------------------------UACGCCCUCGCCGCCUAA-------------------------AUCCCGGUGAG------------------------CGUCCAUCCUUUCAGU-----------------GCCGAUACUGGUUGGAAUGGGCG--------------------------------------------------------UCGACUCUUAUCGGAUC--GUGGUGAAGCCCG-------------CCCUUGGCCGAUCUGC---UAAAACUCUA-AGGGGAUAA-----GCGUUGGAGAUCCGU--GCCUGUC---CGGGAGCCAACGU----CGAAAACCAAA--GAUCAGGCUAAGCA-UGUAG----------------------AUCUGAGGGCUA------CGAUCUGGCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_U01a
Uncult_U01b NNNNNNN-----NNNNNNN--NNNNNNGCUGGUAAC-----GGAAUCCG-AAGUGCAUGC--CGAGG--UGUCAUGU--CCUCGUAAAUCC---------CGUGGCA--ACCAAGCUAGUUGCGAACGACUCCAAC---------------------------------------------------------UACGCCCUCGCCGCCUAA-------------------------AUCCCGGUGAG------------------------CGUCCAUCCUUUCGGU-----------------GCCGAUACCGGUUGGAAUGGGCG--------------------------------------------------------UCGACUCUUAUCGGCUC--GCGGUGAAGCCCG-------------CCCUUGGCCGAUCUGC---UAAAACCCUA-AGGGGAUAA-----GCGUUGGAGAUCCGU--GCCUGUC---CGGGAACCAACGU----CGAAAACCAAA--GAUCAGGCUAAGCA-UGUAG----------------------AUCUGAGGGCUA------CGAUCUGGCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_U01b
Steno_malto GGGGGUG-----CAUUGGU--UUCGACGGGGGUUGU-----GAAGUCGCCUGGCGCAUGC--CGAGG-GGGUAGCUUU-CCUCGUAAAUCC---------AGCUGC---AAAACUCUAGUUGCCAACGACGACAAC---------------------------------------------------------UACGCUCUGGCCGCUUAA--------------------------GGCCUAAGC-------------------------CUCGAAACCGCUUGUG------------------UCCAUGCUCGCGG-UGUAGAG----------------------------------------------------------UCACUAUCAUGGAAUC--GCGCUGG-GUGGCU-----------GCCUGUCAGUCCGGCAC---UAGAACACA-ACAGGC-UG------GUUCCCGGAUGCGCUUUGCACGCCGU-GCUGUUCGGGGAC----GAGAUCCA---ACGGU-GAGCUAAGCA-UGUAG----------------------UGCUGGGGAUGG------AGUGCCUUCGGAC-GGCGGUUCAAUUCCGCC-CACCUCCACCA Steno_malto
Cardiobacteriales
Diche_nodos GGGGGCG----UUCUUGGA--UUCGACGGGGAUUGCG------AGGCUCGAGGUGCAUGU--CGAGA---AUGAGAGAAUCUCGUUAAAUA---------CUUUCAA---AACUUAUAGUUGCAAACGACGACAAC---------------------------------------------------------UACGCUUUAGCGGCUUAA-------------------------UUCCCGCUU--------------------------UCGCUUACCUAGAUUU-----------------GUCUGUGGGUUUACCGUAAGCGA----------------------------------------------------------CAUUAACACAGAAUC--GCUGGUUAACGCG------------UCCGCUGUUA--AUCGGU--UAAA--UUA-AGCGGAAUC------GCUUGUAAAAUGCCU--GAGCGUU--GGCUGUUUAUGAGU----UAAACCUAAUU--AACUGCUCUAAACA-UGUAG----------------------UACCAAAAGUUA------AGGAUUCGCGGAC-GGGGGUUCAAAUCCCCC-CGCCUCCACCA Diche_nodos
Thiotrichales
Franc_tula1 GGGGGCG----AAUAUGGU--UUCGACAUGAAUGUC-----AAAAUCU-AAGGUGCAUGC--CGAGG-AAGUACCGUAACCUCGUUAAUA-------ACAGUACAAAUGCCAAUAAUAACUGGCAACAAAAAAGCA---------------------AACCGCGUAGCGGCUAACGACAGCAACUUUGCUGCUGUUGCUAAAGCUGCCUAG--------------------------UCUAGCUUAAUAAUCUAGAUGCGC----------ACGGAUAUGAUAGUCUU----------------UCUUAUGACACUAUCUAUACAUCCGUUCA---------------------------------------------------UAUUCCGCAUAAGA----CGGUCUUUGCUUUUU-----------GUCUGGGAGUUAAGGCUG-UAUUUAA----CAGAC-UC------GCUAACUAUUACCCU--GGCUAAUUGGGGAAUAGUCAAGC----UAAACUCAAAUA-GAUUAGCCUAAGCA-UGUAG----------------------AUCCAAAGAUCU------AGAGUUUGUGGAC-GCGGGUUCAAAUCCCGC-CGCCUCCACCA Franc_tula1
Franc_tula2 GGGGGCG----AAUAUGGU--UUCGACAUGAAUGUC-----AAAAUCU-AAGGUGCAUGC--CGAGG-AAGUACCGUAACCUCGUUAAUA-------ACAGUACAAAUGCCAAUAAUAACUGGCAACAAAAAAGCA---------------------AACCGCGUAGCGGCUAACGACAGCAACUUUGCUGCUGUUGCUAAAGCUGCCUAG--------------------------UCUAGCUUAAUAACCUAGAUGCGC----------ACGGAUAUGAUAGUCUU----------------UCUUAUGACACUAUCUAUACAUCCGUUCA---------------------------------------------------UAUUCCGCAUAAGA----CGGUCUUUGCUUUUU-----------GUCUGGGAGUUAAGGCUG-UAUUUAA----CAGAC-UC------GCUAACUAUUACCCU--GGCUAAUUGGGGAAUAGUCAAGC----UAAACUCAAAUA-GAUUAGCCUAAGCA-UGUAG----------------------AUCCAAAGAUCU------AGAGUUUGUGGAC-GCGGGUUCAAAUCCCGC-CGCCUCCACCA Franc_tula2
Thmic_cruno GGGGAUG-----CACUGGU--UUCGACGGGGAGUAC-----AAAGUUU-AGGAUGCAUGU--CGUGC--CUGAAUGAU-GCACGUAAAUCU-------UUAUUUCA--AUUUGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUAGCGGCUUAA-----------------------UCCCGCUAG----------------------------CGCAGACUGGGACCGUUG--------------UUCGUGGCACCCAGCUCUGUG----------------------------------------------------------UCGACUCACACGGAAUC---GUCGGGUCUUAUGU------------GUUUGGAUAAGACUUGAC-UAAACUUAA--CAAAC-UC------GCUUAAUGUGAUCCCUGCUGGCCGGGCAGCAUUAAGU-------UAAAAUAAUA---GAC-CAAAUAAACA-UGUAG----------------------AGUUUUAAAUGG------AGGCUUCUCGGAC-GGCGGUUCGACUCCGCC-CAUCUCCACCA Thmic_cruno
Chromatiales
Ntsco_ocean GGGGGCG-----ACCUGGC--UUCGACGCGGGUAGC-----AAAACCU-AAGGGGCAUGC--CGAGG-UGCAGUGA---CCUCGUUAAUCA---------CGCUGCA---ACAUUAUAGUUGCCAACGACGACAAC---------------------------------------------------------UACGCACUCGCUGCUUAA------------------------AACCCAGUAGGGUGC---------------------CGUCUGACUGAAGCCGU----------------GCUUGUGCGUUCAGAUUUCAGGCG-------------------------------------------------------UCGAUUCUCACAAGAUC--GCGGUGAA-GUUC-------------UCCCAGGGCAGACCCGC--UAAAACUUUA-CUGGGAUC------GCCGUAUGUUUUCCU-UGCCCGUC--GGGUAGCAUGCGGU----UAAAUUAAU----GACUGGGCUAUGCA-UGUAG----------------------AACCGAAGGCGG------AGUACUUGUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Ntsco_ocean
Uncul_whal1 GGGGGCG-----UAUUGGA--UUCGACGCCGGUUAC-----AAAACUU-GAGGUGCAUGC--CGAGAUGGUGACCA--AUCUCGUUAAUCCAA-------AGUCGCA--AACCUUAUAGUUGCCAACGACGACAAC---------------------------------------------------------UACGCACUCGCUGCUUAU------------------------ACACCAGUAGAGCGC---------------------CAUCUGACUGGAGCCGU----------------GCUUAUGCGUCCAGC-----GCUUCAUCUGCCCCCGGGCCUCAAAACCCAGGGCAGCGGCGAAGCAUUCAGGUG-----UCAUAACUCAUAAGAUC--GCGAUGAC-CCAC------------GUCUGGGGGU-GACUCGC--UAAAACCUAAACCAGAAUC------GCCAUUUCACAUGCCCUGCCGGCC--GGGCAGUGAGAGGU----UAAAUAUAAUA--GACCGAACUAAGCA-UGUAG----------------------AGCCGAUAGCAG------CGGACUGACGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Uncul_whal1
Legionellales
Legio_pneum GGGGGCG-----ACCUGGC--UUCGACGUGGGUUGC-----AAAACCG-GAAGUGCAUGC--CGAGA-AGGAGAUC---UCUCGUAAA-UA---------AGACUCA-AUUAAAUAUAAAUGCAAACGAUGAAAAC---------------------------------------------UUUGCUGGUGGGGAAGCUAUCGCUGCCUAA---------UAAGCACUUUAGUUAAACCAUCACUGUGUACUGGCCAAUAAACCCAGUAUCCCGUUCGACCGAGCCC-----------------GCUUAUCGGUAUCGAAUCAACGG--------------------------------------------------------UCAUAAGAGAUAAGCUA--GCGUCCUAAUCUA--------------UCCCGGGUUAUGGCGC---GAAACUCA---GGGAAUC------GCUGUGUAUCAUCCU--GCCCGUC--GGAGGAGCCACAGU----UAAAUUCAAAA--GACAAGGCUAUGCA-UGUAG----------------------AGCUAAAGGCAG------AGGACUUGCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Legio_pneum
Bctr_SAR1_1 NNNNNNN-----NNN-NNN--NNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNN--NNNN--NNNNNNNN----NNNNNNNNNN----------NNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------------------NNNNNNNNNNNNNNN-----------------------NNNNNNNNNNN--------------------------NNNNNNNNNNNNNNNN-----------------NNNNNNNNNNNNNNNNNNNNCGG---------------------------------------------------------CUAAACACAUAGUCUA--GCCAGGCUGUAUU-------------GCUUGGAUACAGUUUGGU-UAAAUUUAAU-CAAGC-UC------GCAUUCAU---GCCCU-GCUCUUC--GGGUG-AUGGAUGC----UAAAAAUAAUA--GAAUGAGCUAUGCA-UGUAG----------------------AAGUUAGGCUGA------AGGAUUGACGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Bctr_SAR1_1
Bctr_SAR1_2 GGGGGCG-----ACC-GGU--UUCGACAUUUUAGAA----UGAAAUCUUAGAUUGCAUGU--AGAG--CUUAGUAA----CUCUUAAAAC----------UUCUAAA---CUAUAUUAAGUGCCGAUAAUGGCCAA------------------------------------------------------------AUGGCUUUUGCUUAA-----------------------UUGCUAAAGUC--------------------------CAUCAUCAGUAGACGU-----------------UUCUCAUCGUUCGCUGAAUGGUG--------------------------------------------------------UCAUAAAA-AUGAGAUA--GUUUAUUUUUCUG--------------CUUCGGUUUAAUAAAU---GAAUCCUUA--GAAGAUA------GCUAUAUGCCUGUUU--GUUCUGU--ACUGU-CAUAUANN----NNNNNNNNNNN--NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Bctr_SAR1_2
Shew_SAR2_2 GGGGGCG-----ACC-GGU--UUCGACGGGGUAAGA-----UAAUGAUAAGAUUGCAUGC--AGAGG-UUCGGGAU---CCUCUUUAAUA----------UCCCCGAA-AUAUCAAUAAAUGCCGAUUACGGCUAC------------------------------------------------------------AUGGCAGCUGCUUAA-----------------------UUAGCUCUGCC--------------------------CGCUCUGGAUUAAGUU----------------UGUCUGUGGUUUAAUCUAAGAGCG--------------------------------------------------------UCAUAAA-CGCAGACUG--GUCCCUGGAUUU-------------GUUUACUAGAAAGGGAUAA--GAUGUUUU--GUAAACUG------GUUGAUAUAUGGGUU-GUUAUUUG--UCCGCUAUAUCAAU----GAGAAUAAAU---CAGAUGACUAUGUA-UGUAG----------------------ACGUUUUGUUAG-----AAUCUAUCUCGGAC-GGGAGUUCGAAUCUCCC-CGCCUCCACau Shew_SAR2_2
Coxie_burne GGGGGCG-----ACCAGGC--UUCGACGUGGAUCCU-----GAAACCC-GAGACGCAUGU--CGAGC-CGGCAACGAAGGCUCGUAAAUCCAU-------CAGUUGCA--AACAGAUAGUUGCAAACGAUAGUAAU---------------------------------------------------UAUCUCCAAGAAGCUUACGCAUAA-------------------------AGCUUCUU---------------------------CCGUUGCUGGGAUUC------------------GCUUAUAGAUCCCUACCAACGG---------------------------------------------------------CCAUAGCAUAUAAGCUC--GCCCUCAAGCAUG--------------GCUCAUGACUUGAAGGU-UAAACAGAA---GAGC-UC------GCAGUCAAUUUCCCCU-GCACGUC--GGGCGAUUGACUGU----UAAAUCAUA----GACGAUGCUAAGCA-UGUAG----------------------UGUCAACGGCGG------AUGAUUUACGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCAuca Coxie_burne
Methylococcales
Mecoc_capsu GGGGGCG-----ACAUGGC--UUCGACGUGGAUCGC-----GAAACCU-GAGGUGCAUGC--CGAGG-UGCAGAUGA--CCUCGUAAAUC----------CAUCUGCA-AACCAAAUAAACGCCAACGACGACGUU---------------------------------------------------------UACGCACUGGCCGCUUAA-------------------------GCCGGCCGG--------------------------CCUCUGAUCAGCAGCUC----------------GCUUACAAGCGGCUGGUUGGGG-------------------------------------------------------GUAACCCAAUUGUAAGCUC--GCGCUGAAGUCUG--------------UCCGGGGCCGAAGCGC--UAAAACCCAA--CGGAAUC------GCCGUCCGUCUUCCCU-GCCACUC--GGGUAGCGUCCGGC----UAAAUCAAUA----GAGUGGAUACGCA-UGUAG----------------------AACCGAUGGCAG------AGGAUUUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Mecoc_capsu
Shew_SAR1_2 GGGGGCG-----AAUAGGG--UUCGACGUUUCUACU-----GGACUCC-GAAGCGCAUGC--CAAGA-UUGUAGUAAU-UCUUGUAAAACA---------UACUACAA--AAAAAAUAGUUGCAAAUAACGACAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA----------------------------UGCUAA--------------------------CCGAUGCAAGAAUU-------------------GACUGUGGUUUGAAGCAUCGGC---------------------------------------------------------UAAACA--CACAGUCUA--GCCAAGCUAUAUU-------------GCUUGGAUAUAGUUUGGU-AAAAACUUAAUCAAGC-UA-------GCUUUUAU--GCCCU-GCUCUUC--GGGUGAUAAAAGU----UAAAAAUAAUA---GAAUGAGCUAUGCA-UGUAG----------------------AAGUUAGGCUGA------AGGAUUGACGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Shew_SAR1_2
Uncult_EBAC GGGGGCG-----AAUAGGG--UUCGACGUUUCUACU-----GGACUCC-GAAGCGCAUGC--CAAGA-UUGUAGUAAU-UCUUGUAAAACA---------UACUACAA--AAAAAAUAGUUGCAAAUAACGACAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA----------------------------UGCUAA--------------------------CCGAUGUAAGAAUU-------------------GACUGUGGUUUGAAGCAUCGGC---------------------------------------------------------UAAACA--CACAGUCUA--GCCAAGCUAUAUU-------------GCUUGGAUAUAGUUUGGU--AAAACUUAAUCAAGC-UA-------GCUUUUAU--GCCCU-GCUCUUC--GGGUAAUAAAAGU----UAAAAACAAUA---GAAUGAGCUAAGCA-UGUAG----------------------AAGUUAGGCUGA------AGGAUUAGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Uncult_EBAC
Pseudomonadales
Azotb_vinel GGGGCCG-----AUUAGGA--UUCGACGCCGGUAAC-----GAAACUU-GAGGGGCAUGC--CGAGUU-GGUGGCAG-AACUCGUAAAUCCA-------CUGCUACA---AACUCAUAGUUGCCAACGACGACAAC---------------------------------------------------------UACGCUCUGGCGGCUUAA---------------------------UGC-CCCAG------------------------CAGUCUCCAGGGGAU------------------GCCUGUAAACCCGAAGAGACUG---------------------------------------------------------UCAGAUAGAACAGGAUC--GCCGCCAAGUUC-------------GCUGUAGACGUAACGGC---UAAAACUCA-UACAGC-UC---------GCCCAAAGCACCCUGCCCGUCGGGCCGCAAUGGGU-------UAACUCAAUA--GACAGGGCUAAGCA-UGUAG----------------------AACCGAUAGCGG------AGAGCUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Azotb_vinel
Uncul_bone1 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNNNN-----NNNNNNN-NNNNNNNNNNN--NNNNNN-NNNNNNNN-NNNNNNNNNNNNNN-------NNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------------NNNNNNNNNNNNNNNNNN--------------------------C--CUUCGGGCAC---------------------CCCGAGGGUCAGGAU-------------------UCGGCUCGAGCGAAGUGAUUG---------------------------------------------------------UCAGAUAGAACAGGAUC--GCCGCCUAGUAC-------------GUUGUGGACGACGUGGC---UAAACAUUA-CACAAC-UC--------GCUCCA-AGCACCCUGCCACUCGGGCGGUGAGGAGU-------UAACUCAGUA--GAGAUGGCUAAGCA-UGUAG----------------------AACCGAUAGCGG------CGGACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Uncul_bone1
Psmon_aerug GGGGCCG-----AUUAGGA--UUCGACGCCGGUAAC-----AAAACUU-GAGGGGCAUGC--CGAGCU-GGUAGCAG-AACUCGUAAAUUCG-------CUGCUGCA---AACUUAUAGUUGCCAACGACGACAAC---------------------------------------------------------UACGCUCUAGCUGCUUAA---------------------------UGCGGCUAG------------------------CAGUCGCUAGGGGAU------------------GCCUGUAAACCCGAAACGACUG---------------------------------------------------------UCAGAUAGAACAGGAUC--GCCGCCAAGUUC-------------GCUGUAGACGUAACGGC---UAAAACUCA-UACAGC-UC--------GCUCCA-AGCACCCUGCCACUCGGGCGGCGCGGAGU-------UAACUCAGUA--GAGCUGGCUAAGCA-UGUAG----------------------AACCGAUAGCGG------AGAGCUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_aerug
Psmon_syri1 GGGGCCG-----AUUUGGA--UUCGACGCCGGUGAU-----GAAACUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUUCUAUAGUUGCCAAUGACGAAAAC---------------------------------------------------UACGGUGCUCAACUAGCUGCGUAA------------------------GCAGCCUAGCCGCACUUCUGGUAGCUUCGGCUCCAGCAAUCAUCAGGGGAU------------------GCCUGUAAACCCAAAAUGAUUG---------------------------------------------------------UCAUAUAGAACAGGAUC--GUCGCCUAGUAC-------------GUUGUGGACGAAGCGAC---UAAAACUUA-CGCAAC-UC---------GCCCAAUGCACCCUGCCCGUCGGGUCGCUGAGGGU-------UAACUUAAUA--GACACGGCUACGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_syri1
Psmon_syri2 GGGGCCG-----AUUUGGA--UUCGACGCCGGUGAU-----GAAACUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUUCUAUAGUUGCCAAUGACGAAACC------------------------------------------------UACGGGGAAUACGCUCUCGCCGCGUAA-----------------------GCGGUGCUAGCCUUCCUUCUGGUAGCUUCGGCUCCAGCAAUCAUCAGGGGAU------------------GCCUGUAAACCCGAAAUGAUUG---------------------------------------------------------UCAUAUAGAACAGGAUC--GUCGCCUAGUAC-------------GUUGUGGACGAAGCGAC---UAAAACUUA-CACAAC-UC---------GCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGU-------UAACUUAAUA--GACACGGCUAAGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_syri2
Psmon_syri3 GGGGCCG-----AUUUGGA--UUCGACGCCGGUGAU-----GAAACUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUUCUAUAGUUGCCAAUGACGAAAAC---------------------------------------------------UACGGUGCUCAACUAGCUGCGUAA------------------------GCAGCCUAGCCGCACUUCUGGUAGCUUCGGCUCCAGCAAUCAUCAGGGGAU------------------GUCUGUAAACCCAAAAUGAUUG---------------------------------------------------------UCAUAUAGAACAGAAUC--GCCGUGCAGUAC-------------GCUGUGGACGAAUCGGC---UAAAACUUA-CACAGC-UC---------GCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGU-------UAACUUAAUA--GACACGGCUACGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_syri3
Psmon_fluo1 GGGGCCG-----UUUAGGA--UUCGACGCCGGUUGC-----GAAACUC-UAGGUGCAUGC--CGACUU-GGUAACAG-AAGUCGUAAAUCCA-------CUGUUGCA-ACUACUUAUAGUUGCCAAUGACGACCAA---------------------------------------------------UACGGUGCUGCUCUCGCUGCUUAA----------------------UUGCAGCUGACAUGCACUCCUGGUACCUUCGGGUCCAGCAAUCAUCAGGGGAU------------------GUCUGUAAACCCAAAAUGAUUG---------------------------------------------------------UCAUAUAGAACAGAAUC--GCCGUGCAGUAC-------------GUUGUGGACGAAGCGGC---UAAAACUUA-CACAAC-UC---------GCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGU-------UAACUUAAUA--GACACGGCUACGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_fluo1
Psmon_fluo2 GGGGCCG-----UUUAGGA--UUCGACGCCGGUCGC-----GAAACUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUCUUAUAGUUGCCAAUGACGAAAAC---------------------------------------------UACGGCCAGGAAUUCGCUCUCGCUGCGUAA------------------GCAGC---CUUAGCCCUGAGCUUCUGGUACCUUCGGGUCCAGCAAUCACCAGGGGAU------------------GUCUGUAAACCCAAAGUGAUUG---------------------------------------------------------UCAUAUAGAACAGAAUC--GCCGUGCAGUAC-------------GUUGUGGACGAAGCGGC---UAAAACUUA-CACAAC-UC---------GCCCAAAGCACCCUGCCCUUCGGGUCGCUGAGGGU-------UAACUUAAUA--GAAACGGCUACGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_fluo2
Uncul_cand1 GGGGCCG-----UUUAGGA--UUCGACGCCGGUUGC-----GAAACUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUCUUAUAGUUGCCAAUGACGAAAAC---------------------------------------------UACGGCCAGGAAUUCGCUCUCGCUGCGUAA------------------GCAGC---CUUAGCCCUGAGCUUCUGGUACCUUCGGGUCCAGCAAUCACCAGGGGAU------------------GUCUGUAAACCCAAAGUGAUUG---------------------------------------------------------UCAUAUAGAACAGAAUC--GCCGUGCAGUAC-------------GUUGUGGACGAAGCGGC---UAAAACUUA-CACAAC-UC---------GCCCAAAGCACCCUGCCCUUCGGGUCGCUGAGGGU-------UAACUUAAUA--GAAACGGCUACGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Uncul_cand1
Uncul_humn1 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNNNN-----NNNNNNN-NNNNNNNNNNN--NNNNNN-NNNNNNNN-NNNNNNNNNNNNNN-------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNN------------------NNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAUCACCAGGGGAU------------------GUCUGUAAACCCAAAGUGAUUG---------------------------------------------------------UCAUAUAGAACAGAAUC--GCCGUGCAGUAC-------------GUUGUGGACGAAGCGGC---UAAAACUUA-CACAAC-UC---------GCCCAAAGCACCCUGCCCUUCGGGUCGCUGAGGGU-------UAACUUAAUA--GAAACGGCUAAGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Uncul_humn1
Uncul_chck1 GGGGCCG-----UUUAGGA--UUCGACGCCGGUUGC-----GAAACUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUCUUAUAGUUGCCAAUGANNNNNNN------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNN------------------NNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------NNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------------NNNNNNNNNNNNNNNNN--NNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNN---NNNNNNNNN-NNNNNN-NN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN Uncul_chck1
Psmon_fluo3 GGGGCCG-----UUUAGGA--UUCGACGCCGGUUGC-----GAAACUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUCCUAUAGUUGCCAAUGACGAAACC------------------------------------------------UACGGGGAUUACGCUCUCGCUGCGUAA------------------GCAGC---CUUAGCCCUUCCCCCCUGGUACCUUCGGGUCCAGCAAUCAUCAGGGGAU------------------GUCUGUAAACCCAAAAUGAUUG---------------------------------------------------------UCAUAUAGAACAGAAUC--GCCGUGCAGUAC-------------GUUGUGGACGAAGCGGC---UAAAACUUA-CACAAC-UC---------GCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGU-------UAACUCAAUA--GACACGGCUAAGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_fluo3
Psmon_fluo4 NNNNNNN----NNNNNNNN--NNNNNNGCCGGUUGC-----GAACCUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUUCUAUAGUUGCCAAUGACGAAACC---------------------------------------------UACGGG---GAAUACGCUCUCGCUGCGUAA------------------GCAGC---CUUAGCCCUUCCCUCCUGGUACCUUCGGGUCCAGCAAUCAUCAGGGGAU------------------GUCUGUAAACCCAAAGUGAUUG---------------------------------------------------------UCAUAUAGAACAGAAUC--GCCGUGCAGUAC-------------GUUGUGGACGAAGCGGC---UAAAACUUA-CACAAC-UC---------GCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGU-------UAACUUAAUA--GACACGGCUACGCA-UGUAG----------------------UACCGACAGCAG------AGUACUGGCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Psmon_fluo4
Psmon_chlor NNNNNNN-----NNNNNNN--NNNNNNGCCGGUUGC-----GAAACUU-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUCCUAUAGUUGCCAAUGACGAAACC------------------------------------------------UACGGGGAAUACGCUCUCGCUGCGUAA-----------------------GCGGCGCUAGCCUUCCUUCUGGUACCUUCGGGUCCAGCAAUCAUCAGGGGAU------------------GUCUGUAAACCCGAAAUGAUUG---------------------------------------------------------UCAUACAGAACAGAAUC--GCCGUGCAGUAC-------------GUUGUGGACGAAGCGGC---UAAAACUUA-CACAAC-UC---------GCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGU-------UAACUCAAUA--GACACGGCUACGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Psmon_chlor
Psmon_puti1 GGGGCCG-----AUUAGGA--UUCGACGCCGGUAGC-----GAAACUC-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA--ACUUUUAUAGUUGCCAAUGACGAAAAC---------------------------------------------UACGGCGCGGAGUACAAGCUGGCUGCGUAA------------------GCAGUCCUCUUGACCCGUUGCUUCUGGUAGCUUCGGCUCCAGCAAUCACUAGGGGAU------------------GCCUGUAAACCCGAACUGAUUG---------------------------------------------------------UCAUACAGAACAGGAUC--GUCGCGUAGCAC-------------GUUGUGGGCGAAGUGAC---UAAAACUUA-CACAAC-UC---------AUCCAAAGCACCCUGCCCGUCGGGCGGCUGCGGAU-------UAAAUCAGUA--GACACGGCUAAGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGGUUCAAAUCCCCC-CGGCUCCACCA Psmon_puti1
Psmon_puti2 NNNNNNN-----NNNNNNN--NNNNNNGCCGGUAGC-----GAAACUC-UAGGUGCAUGC--CGAGUU-GGUAACAG-AACUCGUAAAUCCA-------CUGUUGCA-ACUUUCUAUAGUUGCCAAUGACGAAACC------------------------------------------UACGGCGAGGAAACCUACGCUCUCGCAGCGUAA------------------G---------UGACCU-UUGCUUCUGGUAGCUUCGGCUCCAGCAAUCACUAGGGGAU------------------GCCUGUAAACCCGAACUGAUUG---------------------------------------------------------UCAUACAGAACAGGAUC--GUCGCGUAGCAC-------------GUUGUGGGCGAAGUGAC---UAAAACUUA-CACAAC-UC---------AUCCAAAGCACCCUGCCCGUCGGGCGGCUGCGGAU-------UAAAUCAGUA--GACACGGCUACGCA-UGUAG----------------------UACCGACAGCGG------AGUACUGGCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Psmon_puti2
Morax_catar GGGGAUG-----UUCUGGC--UUCGACGCUGGUAGC-----GAAACCUAAUGAUGCAUGU--CAAGAG-CGUGUGA--CUCUUGUAAAUCA--------ACAUACAU---UUAAAAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------------GGGCUGCU-------------------------UAGGACGGCACAAAUU-----------------GCCUUUGGUUUGGUUGCUCUCCUA---------------------------------------------------GAUGCGAAUGCACAAAGGAUA--GCCAAAAUUAGC--------------GUUGCGAUGAUUUUGGCGAAAUUCUUA----GCAAAUC------GUCCAAUCC--AUCCU-GACUGUC-GGUU-CGGUGCGGAU----UAAAGCCAUA--GACAGAAUCUAAGCA-UGUAG----------------------AUUCAUAGAUGU------AGUACUGGCGGAC-GCGGGUUCGACUCCCGC-CAUCUCCACCA Morax_catar
Acinbr_ADP1 GGGGAUG----UUAUUGGC--UUCGACGCUGGUGAU-----GAAGCUCAUAGAUGCAUGC--CGAGAG-CGCAUUUU-CUCUCGUAAAUAA--------AAUUUGCA---UUUUAAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCUGCCUAA---------------------------GGGCAGUUU------------------------GUCCGCUUCCUAGAAU-----------------ACUUGUGGUUUAGGAACCCGAC----------------------------------------------------CGUAGCGCACGCACACAAGUCC--GUAUAGAGUCAA--------------GCCUCGGGGCUUUAUAC--CAAACUUA----GAGGAUC------GCAUCUUGU--ACCCU-GUUCGUC-GGGU-CACUGGGUGU----UAAAACAAUA--GACGAUAUCUAAGCA-UGUAG----------------------UAUUCUCGAGUG-----UAGUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Acinbr_ADP1
Acinb_bauma NNNNNNN----NNNNNNNN--NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNN--NNNNNN-NNNNNNNN-NNNNNNNNNNNNN--------NNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------------NNNNNNNNNNNNNNNNNN---------------------------NNNNNNNNN------------------------NNNNNNNNNNNNNNNN-----------------NNNNNNNNNNNNNNNNNNNNNN----------------------------------------------------NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNN--------------NNNNNNNNNNNNNNNNN--NNNNNNNN----NNNNNNN------NNNNNNNNN--NNNNN-NNNNNNN-NNNN-NNNNNNNNNN----NNNNNNNNNN--NNNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN-----NNNUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Acinb_bauma
Uncul_reman GGGGAUG----UUAUUGGC--UUCGACGCCGAUGAU-----GAAGCUCAUAGAUGCAUGC--CGAGAG-CGCAUUUU-CUCUCGUAAAUCA--------AAUUUGCA---UAUU-UUAGUCGCAAACGACGAAUCU---------------------------------------------------------UACGCUCUAGCUGCCUAA---------------------------GGGCAGCUU------------------------GUCCGCUUCACUGAAU-----------------ACUUGUGGUCAGUGGACCCGAC----------------------------------------------------UGUAGCGCACGCACACAAGUCC--GUAUAAAGUCAA--------------GCCUCGGGGCUUUAUAC--UAAACUUA----GAGGAUC------GCGUUUUGU--ACCCU-GUUCGUC-GGGU-CACUUAAUGU----UAAAAUAAUU--GACGAUAUCUAAGCA-UGUAG----------------------UAUUCUCGAGUG-----UAGUGUUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Uncul_reman
Uncul_bone3 GGGGAUG-----UUCUGGC--UUCGACGCUGGUGAU-----GAAACUCAAUGAUGCAUGU--CGAGAG-UGUAUGUC-CUCUCGUUAAUCA--------AACAUAUA---UUGUUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCAGCUUAA---------------------------ACCCUGCUU------------------------ACUUAGUUGCUGAUC------------------ACCUACAGUUGGUUAACUAAGU----------------------------------------------------UGAAGCGUCCGCAUGUAGGCUC--GCCACAAGUGAUU-------------GUCUCAAUUGCUUGGGUU-CAAAAGUA---GAGAA-UC------GUCCAAUCC--AUCCU-GACUGUC-GGAU-CGGUGCGGAU----UAAAUUUAAA--GACAGAAACUAAACA-UGUAG----------------------AUUCAUGAGCGU------AAUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Uncul_bone3
Psycb_cryha GGGGAUG-----UUCUGGC--UUCGACGCUGGUGAU-----GAAACUCAAUGAUGCAUGU--CGAGAG-UAUAUGUC-CUCUCGUUAAUCA--------AACAUAUA---UUGUUAUAGUCGCAAACGACGAAAAU---------------------------------------------------------UACGCUCUAGCAGCUUAA---------------------------ACCCUGUUU------------------------ACUUGGUUGCUGAUC------------------AUCUACAGUUGGUCAACUAAGU----------------------------------------------------UGAAGCGUCCGCAUGUAGAAGC--GCCACAAGUGAUU-------------GUCUCAAUUGCUUGGGUU-UAAAAGUA---GAGAA-UC------GUCCUAUCC--AUCCU-GACUGUC-GGAU-CGGUGCGGAC----UAAAACCAAA--GACAGAAACUAAACA-UGUAG----------------------AUUCAUGAGCGU------AAUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Psycb_cryha
Psycb_arcti GGGGAUG-----UUCUGGC--UUCGACGCUGGUGAU-----GAAACUCAAUGAUGCAUGU--CGAGAG-UAUAUGUC-CUCUCGUUAAUCA--------AACAUAUA---UUGUUAUAGUCGCAAACGACGAAAAU---------------------------------------------------------UACGCUCUAGCAGCUUAA---------------------------ACCCUGUUU------------------------ACUUGGUUGCUGAUC------------------AUCUACAGUUGGUCAACUAAGU----------------------------------------------------UGAAGCGUCCGCAUGUAGAAGC--GCCACAAGUGAUU-------------GUCUCAAUUGCUUGGGUU-UAAAAGUA---GAGAA-UC------AUCCUAUCC--AUCCU-GACUGUC-GGAU-CGGUGCGGAC----UAAAACCAAA--GACAGAAACUAAACA-UGUAG----------------------AUUCAUGAGCGU------AAUGCUGGCGGAC-GCGGGUUCAACUCCCGC-CAUCUCCACCA Psycb_arcti
Psycb_urati NNNNNNN------NNNNNN--NNNNNNGCUGGUGAU-----GAAACUCAAUGAUGCAUGU--CGAGAG-UAUAUGUC-CUCUCGUUAAUCC--------AACAUAUA---UUGUUAUAGUCGCAAACGACGAAAAU---------------------------------------------------------UACGCUCUAGCAGCUUAA---------------------------ACCCUGUUU------------------------ACUUGGUUGCUGAUC------------------ACCUACAGUUGGUCAACUAAGU----------------------------------------------------UGAAGCGUCCGCAUGUAGGAUC--GCCACAAGGGAUU-------------GUCUCAAUCCUUUGGGUU-CAAAAGUA---GAGAC-UC------GGCUAAUCC--AUCCU-GACUGUC-GGAU-CGGUGCAGAC----UAAAAUUAAA--GACAGAAACUAAACA-UGUAG----------------------AUUCAUGAGCGU------AAUGCUGGCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Psycb_urati
Oceanospirillales
Chrha_salex GGGGGCG-----ACAUGGC--UUCGACGCCGGUGAC-----AAUCCCU-GAGGUGCAUGC--CGAGAG-CGUAACGU-AUCUCGUAAAUCCA-------ACGUUACG---AUUAAAUAGUCGCAAACGACGACAAC------------------------------------------------UACGCUCAGGGCGCGCUGGCAGCGUAA--------------------------CAACUGCUAG------------------------CUUCUAGUCCGGCCCGGAGGUGAUGUG------CCCAUUCAUCACCGAUGGGAUACGAGC----------------------------------------------------UCAGACU-GAUGGGAUC--GCGGUUGGCCCUG-------------UCCUCGUGUCAGCCGC---UAAAACUUA--GAGGAAUC--------GCGUCGCUGGAUCCUGCCCGUCGGAGCCAGGGACGU-------UAAAUCAGAA--GACGGACCUAAGCA-UGUAG----------------------AGCCGAUGGGUG------AGUGCCGGCGGAC-GGGGGUUCAAUUCCCCC-CGCCUCCACCA Chrha_salex
Alteromonadales
Marbr_hydro NNNNNNN----NNNNNNNN--NNNNNNGCCGGUGAC-----GAACCCU-UGGGUGCAUGC--CGAGAU-GGCAGCGA-AUCUCGUAAAUCCA-------AAGCUGCA---ACGUAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUGGCGGCGUAA------------------------GCCGUU-CCAGU------------------------CGUCCUGGCUGAGGC------------------GCCUAUAACUCAGUAGCAACAUCCCAGGACG-----------------------------------------------UCAUCGCUUAUAGGCU----GCUCCGUUCACCAGA-----------GCUCACUGGUGUUCGGC--UAAGAUUAAA--GAGC-UC-------GCCUCU-UGCACCCUGACCUUCGGGUCGCUUGAGGU-------UAAAUCAAUA--GAAGGACACUAAGCA-UGUAG----------------------ACCUCAAGGCCU------AGUGCUGGCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Marbr_hydro
Marbr_aquae GGGGACG-----ACUUGGC--UUCGACGCCGGUGAC-----GAACCCU-UGGGUGCAUGC--CGAGAU-GGCAGCGA-AUCUCGUAAAUCCA-------AAGCUGCA---ACGUAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUGGCGGCGUAA------------------------GCCGUU-CCAGU------------------------CGUCCUGGCUGAGGC------------------GCCUAUAACUCAGUAGCAACAUCCCAGGACG-----------------------------------------------UCAUCGCUUAUAGGCU----GCUCCGUUCACCAGA-----------GCUCACUGGUGUUCGGC--UAAGAUUAAA--GAGC-UC-------GCCUCU-CGCACCCUGACCUUCGGGUCGCUUGAGGU-------UAAAUCAAUA--GAAGGACACUAAGCA-UGUAG----------------------ACCUCAAGGCCU------AGUGCUGGCGGAC-GCGGGUUCAAUUCCCGC-CGUCUCCACCA Marbr_aquae
Micbu_degra GGGGGCG-----AUUAGGA--UUCGACGCCGGUAAC-----AAAACCC-GAAGUGCAUGU--CGUGAG-GGUAGCCA-AUCACGUAAAUCCA-------AAGCUGCA---AAUUAUCAGUUGCCAAUGAUGACAAC---------------------------------------------------UACGGUGCUCAACUAGCUGCGUAA-----------------------GUAGCUUUUUGUUACACCAUCUAGCGGUACGCCGCUAGCGGUUUUUAACA---------------------AGGUGCCAGUACCGC-------------------------------------------------------------GUUAACGACUGUCACUUAGAACUGGAUCGCAGUGAAGCCUG------CCUGGGGUGGAUCAGCU--AAACUUUU---ACAGGAUC-------GCGCUUU-UCGUCCCGCCCGCUGGGCUGUAAAGCGU-------UAAAUCAAUA---AGCGGUUCUAAGCA-UGUAG----------------------AGCUGACGGCGG------AGUACUGACGGAC-GGGGGUUCAAAUCCCCC-CGCCUCCACCA Micbu_degra
Uncul_flatw GGGGACG-----ACAUGGC--UUCGACGCUGGUAAC-----AAAACCA-AAGGUGCAUGU--CGAGUG-UACAGUGG-CACUCGUACUCCAA-------UCGCUGUA----AUCAAUAGUUGCAAACGAUGACAAC---------------------------------------------------UACGGUGCUCAACUAGCUGCGUAA-----------------------GCAGUGAAAGAU--CACUUU-UAGGGUUACGACCCUAUCGGUCUCUAGCA---------------------AGGUGCCUGUAUCGC-------------------------------------------------------------GCUAUAGACUGUCAACUAGAACAGGAUCGUAAAGCGGCACA------CUCAGGGUUGUUUUACU--AAACUUAA---CUGAGAUC-------GCCAACC-ACGUCCUGCCCGUUGGGCUNNNNNNNNN-------NNNNNNNNNN---NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNUNNNN Uncul_flatw
Gamprb_SAR1 GGGGGCG----UAUUAGGC--UUUGACGUCUACCAC-----GGAACCC-AAAGUGCAUAC--CGAGC--ACGAACAU-AACUCGUAAAAUAU-------UGUUUAAA----ACAAAUAGUUGCAAAUAAUUACAAC---------------------------------------------------------UAUAGUUUGGCAGCUUAA-------------------------UGCCAAC----------------------------CUGUUAUCAUUUGU------------------GACCUACAACAUUUGAUAACGG---------------------------------------------------------UCAUUUUAGUAGGAUAUA--CUCUACCAG-----------------AGCCCACUU-GUAGAGC--GAAUUUAA---GGGCU-UA-------GCUUAGU-GUGUCUUGAUCAUCAGGCUACACCAAAGU------GAAUUAAAUU---GAUGAAUCUAAGUA-UGUAG----------------------AGACUAGGGGAA------AGUGAUGACGGAC-GUGGGUUCAAAUCCCGC-CGCCUCCACCA Gamprb_SAR1
Colwe_psych GGGGCGG----AUCUAGGA--UUCGACAAGAUUCAU-----GAAACUC-AAGGUGCAUGC--CCAGG--GGCGGUUU-GCCUGGUAAA-----------AAGCCGCA---AAACUAUAAUUGCUAACGACGAUACG---------------------------------------------------------UUCGCACUAGCCGCUUAG---------------------------GCUAG----------------------------CCAUCGCCUUGAAAUCUC--------------UCCUAUUGGUUAGAGG---AU--CGAUGG--------------------------------------------------UCACCCCA-AAUAGGAUA--GCGAGGGAAGCAC------------GCUUGAGGCU-GAACCGC--GAAAUAGUA-UCAAGC-UC-------ACCAUGACGAAGCCUGUCGCUUGGCGUCUAAUUGGU-------UAAAUAAAU----GAG-CGACUAAGCA-UGUAG----------------------UACCGAGAACGU------AGGCUUUUUGGAC-GGGGGUUCGAUUCCCCC-CCGCUCCACCA Colwe_psych
Psalt_halop NNNNNNN----NNNNNNNN--NNNNNNGGAAUUCAA-----GAAGCCC-GAGGUGCAUGU--CGAGG--UGCGGUUU-GCCUCGUAAAA----------AAGCCGCA-AUUUAAAGUAAUCGCAAACGACGAUAAC---------------------------------------------------------UACUCUCUAGCAGCUUAG-----------------------GCUGGCUAG----------------------------CGCUCCUUCCAUGUAU----------------UCUUGUGGACU--GGA--UUUU-GGAGUG--------------------------------------------------UCACCCUAACACCUGAUC--GCGACGGAAACCCU------------GGCCGGGGUUGAAGCGU--UAAAACUAAG-CGGCC-UC-------GCCUUUAUCUACCGUGUUUGUCCGGGAUUUAAAGGU-------UAA-UUAAAU---GACAAUACUAAACA-UGUAG----------------------UACCGACGGUCG------AGGCUUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Psalt_halop
Psalt_halo2 GGGGCUG-----AUUAGGA--UUCGACGGAAUUCAA-----GAAGCCC-AAGGUGCAUGU--CGAGG--UGCGGUUU-GCCUCGUUAAA----------CAGCCGCA-ACCUAAAGUAAUCGCAAACGACGAUAAC---------------------------------------------------------UACUCUCUAGCGGCUUAG-----------------------GCCAGCUAG----------------------------CGCUCCUUCUAUGUAU----------------UCUUGUGGACU--AGA--UUUU-GGAGUG--------------------------------------------------UCACCCUAACACCUGAUC--GCGAUGGAAACCCU------------GGCCGGGGUUGAAGCGU--UAAAACUAAG-CGGCC-UC-------GCCUUUAUUUACCGUGUUUGUCCGGGACUUAAAGGU-------UAAUUAAAU----GACAAUACUAAGCA-UGUAG----------------------UACCGACGGUCG------AGGCUUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Psalt_halo2
Psalt_atlan GGGGCUG----AUUUUGGA--UUCGACAAGAUUCUU-----GAGGCUU-UAGGUGCAUGC--AGAGG--AGCGGUUU-GCCUCUUAAA-----------AAGCCGCA---UUUAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUCUAGCCGCUUAA---------------------------UAACCGGCUAAGC------------------------CCUUCCACUCAUACUCU---------------UUCUGCUAGUA--GAG--GUUC-GGAAGG--------------------------------------------------UCAUCCC--AGCAGAAUA--GCGAGGGA-ACCUU------------GUCUAAGGGUGAACCGC--GAAAUAGUAU-UAGGC-CC-------GCUAUGAGAAAUCCUGUCUGCCGGAGUUCGAAAUAGU------UAAAUAAAA----GAC-AGAAUAAGCA-UGUAG----------------------UACCGACGGUUA------ACGUUUUUUGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Psalt_atlan
Shewa_oneid GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGU-AAA----------AAGCCGCA---AAGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUAGCCGCUUAA-----------------------UGCCGCUAG----------------------------CCAUCUACCACACGCUUU--------------GCACAUGGGCAGUGGA--UUU---GAUGG--------------------------------------------------UCAUCUCACAUCGUGCUA--GCGAGGGAACCCU-------------GUCUGGGGGUGAACCGC--GAAACAGUA-CCGGAC-UC-------ACCGUGUGGGAUCCUGUCUUUCGGAGUUCAAACGGU-------UAAACAAUA----GAA-AGACUAAGCA-UGUAG----------------------CGCCUUGGAUGU------AGGUUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_oneid
Shewa_putre GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGU-AAA----------AAGCCGCA---CAGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUAGCAGCUUAG-----------------------GCUAGCUAG----------------------------CCAUCUGACACAGGUCUC--------------UCAAAUGGGCGGUGUA----UACAGAUGG--------------------------------------------------UCAUCUUACAU-UUGAUA--GCGAGGGAACUCC-------------GUCCGGGGGUGAACCGC--GAAAUAGUA-CCGGAC-UC-------GCCCGAUGAAAUCCUGUCUUUCGGAGUUUAUUCGGGU------UAAUUAAAA----GAG-AGACUAAGCA-UGUAG----------------------UGCCUUGGAUGU------AGGUGUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_putre
Shewa_spPV4 GGGGGCG----AUUCUGGA--UUCGACAAGAUUCAC-----GAAACCC-UAGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGU-AAA----------AAGCCGCA---CAGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUAGCAGCUUAG-----------------------GCUAGCUAG----------------------------CCAUCUUGCUCACGUUUC--------------UCAAAUGGGCAGAGUA----UUAAGAUGG-------------------------------------------------UCACCUUUACAU-UUGAUA--GCGAGGGAACCAU-------------GUUCAGGGGUGAACCGC--GAAACAGUA-CUGAAC-UC-------GCCAAUAACAAUCCUGUCUUUCGGAGUGUUGUUGGU-------UAACCAAUA----GAA-AGACUAAGCA-UGUAG----------------------CGCCGAGGAUGU------AGGCUUUUUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_spPV4
Shewa_denit GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-AAGGAGCAUGU--CGAGG--GGCGGUUG-GCCUCGU-AAA----------AAGCCGCA---CCGUUAUAGUUGCAAACGACUCUAAC---------------------------------------------------------UACUCUCUAGCAGCUUAG-----------------------GCUAGCUAG----------------------------CCAUCUGACCCAGGUUUC--------------UCAAAUGGGCGGGGUA----UACAGAUGG--------------------------------------------------UCAUAUAACAU-UUGAUA--GCGAGGGAACUCC-------------GUCCGGGGGUGAACCGC--GAAACAGUA-CCGGAC-UC-------GCCAUGUAGCAUCCUGUCUUUCGGAGACUGCCUGGU-------UAACUAAAA----GAG-AGACUAAACA-UGUAG----------------------CGCCGAGGAUGU------AGGCUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_denit
Shewa_frigi GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-AAGGAGCAUGU--CGAGG--GGCGGUUG-GCCUCGU-AAA----------AAGCCGCA---CCGUUAUAGUUGCAAACGACUCUAAC---------------------------------------------------------UACUCUCUAGCAGCUUAG-----------------------GCUAGCUAG----------------------------CCAUCAACCACACGUUUC--------------GCACGUGGACAGUGGA----UUCUGAUGG--------------------------------------------------UCAUAUUACAGUGUGCUA--GCGAGGGAACUCC-------------GUCCGGGGGUGAACCGC--GAAACAGUA-CCGGAC-UC-------ACCAAGUAGCAUCCUGUCUUUCGGAGACUGCUUGGU-------UAAAUAAAA----GAG-AGACUAAACA-UGUAG----------------------UGCCGAGGAUGU------AGGCUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_frigi
Shewa_amazo GGGGGCG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACUC-CGGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGU-AAA----------AAGCCGCA---AAGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUGGCUGCUUAA----------------------UUAGCGCCAG----------------------------CCAUCUACCACAGGUCUC--------------GCACAUGGGCAGUGGA-----UUUGAUGG--------------------------------------------------UCACCUUACAUCGUGCUA--GCGAGGGAACCUU-------------GUCUGGGGGUGAACCGC--GAAACAGUU-CCAGGC-UC-------ACCGUUAGAAAUCCUGUCUUUCGGAGUUCGAGCGGU-------UAAAUAAAA----GAG-AGACUAAGCA-UGUAG----------------------CGCCUUGAGCGU------AGGUUUUUCGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_amazo
Shewa_balti GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGU-AAA----------AAGCCGCA---CCGUUAUAGUUGCAAACGACUCUAAC---------------------------------------------------------UACUCUCUAGCAGCUUAG-----------------------GCUAGCUAG----------------------------CCAUCUGACACAGGUCUC--------------UCAAAUGGGCAGUGUA----UACAGAUGG--------------------------------------------------UCAUCCUACAU-UUGAUA--GCGAGGGAACUCC-------------GUCCGGGGGUGAACCGC--GAAAUAGUA-CCGGAC-UC-------GCCCGAUGAAAUCCUGUCUUUCGGAGUUUAUUCGGGU------UAAUUAAAA----GAG-AGACUAAGCA-UGUAG----------------------UGCCUUGGAUGU------AGGUGUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewa_balti
Shew_SAR1_1 GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGU-UAA----------AAGCCGCA---AAGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUAGCCGCUUAA-----------------------UGCCGCUAG----------------------------CCAUCUACCACACGCUUC--------------GCACAUGGGCAGUGGA--UUU---GAUGG--------------------------------------------------UCAUCUCACAUCGUGCUA--GCGAGGGAACCCU-------------GUCCGGGGGUGAACCGC--GAAACAGUA-CCGGAC-UC-------ACCGUUUGGGAUCCUGUCUUUCGGAGUUCAAACGGU-------UAAACAAUA----GAA-AGACUAAGCA-UGUAG----------------------CGCCUUGGAUGU------AGGUUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shew_SAR1_1
Shewan_ANA3 GGGGGCG----AUUCUGGA--UUCGACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGU-UAA----------AAGCCGCA---AAGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUAGCCGCUUAA-----------------------UGCCGCUAG----------------------------CCAUCUACCACACGUUUC--------------GCACAUGGGCAGUGGA--UUU---GAUGG--------------------------------------------------UCAUCUCACAUCGUGCUA--GCGAGGGAACCCU-------------GUCCGGGGGUGAACCGC--GAAACAGUA-CCGGAC-UC-------ACCGUGUGGGAUCCUGUCUUUCGGAGUUCAAACGGU-------UAAACAAUA----GAA-AGACUAAGCA-UGUAG----------------------CGCCUUGGAUGU------AGGUUUUCUGGAC-GCGGGUUCAAGUCCCGC-CGCCUCCACCA Shewan_ANA3
Uncult_WW11 NNNNNNN----NNNNNNNN--NNNNACAGGAUUCAC-----GAAACCC-UGGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGU-AAA----------AAGCCGCA---CAGUUAUAGUUGCAAACGACGAUAAC---------------------------------------------------------UACGCUCUAGCAGCUUAG-----------------------GCUAGCUAG----------------------------CCAUCUGACACAGGUCUC--------------UCAAAUGGGCGGUGUA----UACAGAUGG--------------------------------------------------UCA-UCUUACAUUUGAUA--GCGAGGGAACUCC-------------GUCCGGGGGUGAACCGC--GAAAUAG-UACCGGAC-UC-------GCCCGAUGAAAUCCUGUCUUUCGGAGUUUAUUCGGGU------UAAUUAAAA----GAG-AGACUAAGCA-UGUAG----------------------UGCCUUGGAUGU------AGGUGUUCUGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_WW11
Idiom_loihi GGGGCUG-----AUCUGGA--UUCGACGGGAUACAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGAGGCAG-GCCUCGUAAAA-----------AGCCUCA---ACCUAAUAGUUGCAAACGACGACAAC---------------------------------------------------------UACGCUCUAGCGGCUUAA---------------------UAACCCGCUA--AGC------------------------CCAUCCCCCGGCGCUUU----------------GUCUGCGAGACCGGA----CCAGGAUGG-------------------------------------------------CUCAAACUAAUGUAGACUC--GCGU-GGAGGCUUU------------GUCCGGAGCUGAAGCGU--UAAAACCAA-UCGGAC-UC------GUCAGUUGUGAAGCCUGUCAGUCGGC-GUCACACUGAU------UAACUAAAA----GAC-UGACUAAGCA-UGUAG----------------------GACCGAGGAUGU------AGGUAUUGCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Idiom_loihi
Vibrionales
Phobm_phosp NNNNNNN----NNNNNNNN--NNNNNNAGGAUCACG-----AAGGCUU-GUGGAGCAUGU--CGAGG--UGCGGUUU-GCCUCGUUAAA----------CAGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UACCCUGCUAAGAGCG-----------------------CUCCUGCCCUAGCUUCC----------------GCUUGUAAGACGGGGAAUAA--CAGGGG-------------------------------------------------UUCAAACCCAAACGAGAUA--GCGAGGGAUUCUUUGA---------CUAGAGAGA-UGAACCGC--GAAAUAGAA-UUCUGG-UA------UGUAUUAGCAUAGCGUGUCAAUUCGCAGUGACGAUACG------AGAA-UAAA----GAU-UGACUAAACA-UGUAG----------------------CGCCAUCUGUUA-----GACUGAUUUUGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Phobm_phosp
Phobm_profu GGGGCUG----AUUCAGGA--UUCGACAGGAUCAAG-----AAGGCUU-GUGGAGCAUGC--CGUGG--GGCGGUUG-GCCACGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UUCGCACUAGCAGCUUAA---------------------UAACCUGCUAG-CGCA-----------------------CUUCUACCCUAGCUUCC----------------GCUUGUAAGACGGGGAAUCA--UAGAAG-------------------------------------------------UUCAAACCCAAACGAGAUA--GCGAGGGAACCUUUGA---------CUAGAGAGG-UGAACCGC--GAAAUAGAA-UUCUGG-UA------UGUAUUUACAUGGCGUGUCUGUUCGCAGUGUACUUACG------AGAA-UAAA----GAU-AGACUAAGCA-UGUAG----------------------CGCCUAUGGUUG-----GAUUGCUCUUGGAC-GCGGGUUCAAAUCCCGC-CAGCUCCACCA Phobm_profu
Vibro_fisch GGGGCUG----AUUCAGGA--UUCGACGGGAAUUUU-----GAAACCC-GAGGAGCAUGU--CGUGG--GGCGGUUG-GCCACGUAAA-----------AAGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUGAGAGC------------------------UCUCCUGCCCUAGCUUCU---------------GCUUGUAAGACGGGGAAUAA-CAGGGGA--------------------------------------------------UCAAACCCAAACGAGCUA--GAAC-GGAUUCUCCC----------GCCUGAGAGAUGAACUUC--GAAUUAUAAUUCAGGA-UA-------GCCAUAAGAUAGCGUGUCGGUUCGCAGUUUUACGGU-------GAAAUCAAA----GAU-CGACUAAACA-UGUAG----------------------CGCCAACGGUGA------ACGAUUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Vibro_fisch
Vibro_chole GGGGCUG----AUUCAGGA--UUCGACGGGAAUUUU-----GCAGUCU-GAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UACCCUGCUCAGAGC------------------------CCUUCCUCCCUAGCUUCC---------------GCUUGUAAGACGGGGAAAUC-AGGAAGG--------------------------------------------------UCAAACCAAAUCAAGCUG--GCGU-GGAUUCCCCC----------ACCUGAGGGAUGAAGCGC--GAGAUCUAAUUCAGGU-UA-------GCCAUUCGUUAGCGUGUCGGUUCGCAGGC-GGUGGU-------GAAAUUAAA----GAU-CGACUAAGCA-UGUAG----------------------UACCAAAGAUGA------AUGGUUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Vibro_chole
Vibro_chol2 NNNNNNN----NNNNNNNN--NNNNNNNNNNNNNNN-----NNNNNNN-NNNNNNNNNNN--NNNNN--NNNNNNNN-NNNNNNNNNNN----------NNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------------NNNNNNNNNNNNNNNNNN---------------------NNNNNNNNNNNNNNN------------------------NNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNNNNNN-NNNNNNN--------------------------------------------------NNNNNNNNNNNNNNNNNN--NNNN-NNNNNNNNNN----------NNNNNNGGGAUGAAGCGC--GAGAUCCAAUUCAGGU-UA-------GCCAUUCGUUAGCGUGUCGGUUCGCAGGC-GGUGGU-------GAAAUUAAA----GAU-CGACUAAGCA-UGUAG----------------------UACCAAAGAUGA------AUGGUUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Vibro_chol2
Vibro_sEx25 GGGGCUG----AUUUAGGA--UUCGACGGGAAUUCA-----GAAGUCU-GAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUCAGAGC------------------------UCUCUCGCCCUAGCUUCC---------------GCACGUAAGACGGGGAAUAA-CGAGGGA--------------------------------------------------UCAAACCCAAACGCGCUA--GCCC-GGAUUCUCCC----------GCCUGAGAGAUGAACGGC--GAAUUUUAAUUCAGGC-UA-------GUCAUUCAUUAGCGUGUCGGUUCGCAGGUGGGUGGC-------GAAAUUAAA----GAU-CGACUAAGCA-UGUAG----------------------UACCAAUGAUGA------ACGGUUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Vibro_sEx25
Vibro_parah GGGGCUG----AUUUAGGA--UUCGACGGGAAUUCA-----GAAGUCU-GAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UACCCUGCUCAGAGC------------------------UCUCUCGCCCUAGCUUCC---------------GCACGUAAGACGGGGAAUAA-CGAGAGA--------------------------------------------------UCAAACCCAAACGCGCUA--GCCC-GGAUUCUCCC----------GCCUGAGAGAUGAACGGC--GAAUUAUAAUUCAGGA-UA-------GUCAUUCAUUAGCGUGUCGGUUCGCAGGUGGAUGGU-------GAAUUUAAA----GAU-CGACUAAGCA-UGUAG----------------------UACCAAUGAUGA------AAGGUUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Vibro_parah
Vibro_vulni GGGGCUG----AUUUAGGA--UUCGACGGGAAUUUU-----GCAGUCU-GAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAAACUGCUCAGAGC------------------------CCUCUCGCCCUAGCUUCC---------------GCUUGUAAGACGGGGAAUCA-CGAGGGG--------------------------------------------------UCAAACCAAAUCAAGCUG--GCGU-GGAUUCCCCC----------ACCUGAGGGAUGAAGCGU--AAGAUAUAAUUCAGGU-UA-------GCUAUUCAUUCGCGUGUCGGUUCGCAGGU-GGUAGU-------GAAAUUAAA----GAU-CGACUAAGCA-UGUAG----------------------UACCAAUGAUGA------AUGGUUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Vibro_vulni
Aeromonadales
Aermo_hydr1 GGGGCUG----AUUCUGGA--UUCGACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGCUAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUGGCAGCUUAA---------------------UAACCUGCGCAGAGC------------------------CCUUCUACCCUAGCAU----------------GCCUGUGUCCUAGGGAA----UCGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GUCAAUUCGUGGCGUGUCUCUCCGCAGCGGGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UGCCAAGGAUGU------AGUAAUUUUGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Aermo_hydr1
Aermo_hydr2 GGGGCUG----AUUCUGGA--UUCGACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUCGCAGCUUAA---------------------UAACCUGCGCUGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUGUGUCCUAGGGAA----UCGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GUCAAUUCGUGGCGUGUCUCUCCGCAGCGGGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UGCCAAGGAUGU------AGUAAUUUUGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Aermo_hydr2
Aermo_salmo NNNNNNN----NNNNNNNN--NNNNNNAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCAUAGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUGUGUCCUAGGGAA----UCGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GUCAAUUCGUGGCGUGUCUCUCCGCAGCGGGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Aermo_salmo
Uncult_VLW3 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUCGCAGCUUAA---------------------UAACCUGCGCUGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUGUGUCCUAGGGAA----UCGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GUCAAUUCGUGGCGUGUCUCUCCGCAGCGGGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW3
Uncul_VLS13 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUCGCAGCUUAA---------------------UAACCUGCGCUGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUGUGUCCUAGGGAA----UCGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GUCAAUUCGUGGCGUGUCUCUCCGCAGCGGGUUGGC-------GAAUGUAAA----GAG-UGACUACGCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_VLS13
Uncultu_WW9 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUCGCAGCUUAA---------------------UAACCUGCGCUGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUGUGUCCUAGGGAA----UCGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GUCAAUGCGUGGCGUGUCUCUCCGCAGCGUGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW9
Uncult_WW10 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAGUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUCGCAGUUUAA---------------------UAACCUGCGCUGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUGUGUCCUAGGGAA----UCGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GUCAAUGCGUGGCGUGUCUCUCCGCAGCGUGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_WW10
Uncult_VLW5 NNNNNNN----NNNNNNNN--NNNNGCAAGAUUCAC-----GAAA-CC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUCGCAGCUUAA---------------------UAACCUGCGCUGAGC------------------------CCUUCUCCCCUAGCUU----------------GCCUGUGUCCUAGGGAA----UUGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AAUCGAGC-UA-------GU-AAUGCGUGGCGUGUCUCUCCGCAGCGUGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW5
Uncult_VLW6 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUCGCAGCUUAA---------------------UAACCUGCGCUGAGC------------------------CCUUCUCCCCCAGCUU----------------GCCUGUGUCCUAGGGAA----UUGGAAGG--------------------------------------------------UCA-UCCUUCACAGGAUC--GUGUGGAAGUCCU-------------GCUCGGGGCGGAAGCAU--UAAAACC-AUUCGAGC-UA-------GUCAAUGCGUGGCGUGUCUCUCCGCAGCGUGUUGGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW6
Uncult_RCA4 NNNNNNN----NNNNNNNN--NNNNACGGGACACUC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAU----------AAACCGCA----AAAAAUAGUCGCAAACGACGAAACC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCGGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUAUGUCCUAGGGGA----UUGGAAGG--------------------------------------------------UCA-UCUUUCAUAGGAUC--GCGUGGAAACCUU-------------GUCUGGGGUGGAAGCGU--UAAAACU-AAUCAGAC-UA-------GUUAUUCAGUGGCGUGUCGGUCCGCAGCUGGAUGGU-------GAAUGUAAA----GAUUCGACUAAGCA-UGUAG----------------------UACUGAGGAUGU------AGGUUUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_RCA4
Uncult_RCA7 NNNNNNN----NNNNNNNN--NNNNACGGGACACUC-----GAAACCC-AAGGUGCAUGC--CGAGG--U-CGGUAG-GCCUCGUUAAU----------AAACCGCA----AAAGAUAGCCGCAAACGACGAAACC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCGGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUAUGUCCUAGGGGA----UUGGAAGG--------------------------------------------------UCA-UCUUUCAUAGGAUC--GCGUGGAAACCUU-------------GUCUGGGGUGGAAGCGU--UAAAACU-AAUCAGAC-UA-------GUUAUUCAGUGGCGUGUCGGUCCGCAGCUGGAUGGU-------GAAUGUAAA----GAUUCGACUAAGCA-UGUAG----------------------UACUGAGGAUGU------AGGUUUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_RCA7
Uncult_LEM1 NNNNNNN----NNNNNNNN--NNNNACGGGACACUC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAU----------AAACCGCA----AAAAAUAGUCGCAAACGACGAAACC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCGGAGC------------------------CCUUCUACCCUAGCUU----------------GCCUAUGUCCUAGGGGA----UUGGAAGG--------------------------------------------------UCA-UCUUUCAUAGGAUC--GCGUGGAAGCCUU-------------GUCUGGGGUGGAAGCGU--UAAAACU-AAUCAGAC-UA-------GUUAUUCAGUGGCGUGUCGGUCCGCAGCUGGGUGGC-------GAAUGUAAA----GAUUCGACUAAGCA-UGUAG----------------------UACUGAGGAUGU------AGGUUUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_LEM1
Uncult_LEM2 NNNNNNN----NNNNNNNN--NNNNACGGUACACUA-----GAAAACC-AAGGUGCAUAC--CGAGG--UGCGGUAG-CCUUCGUUAAU----------AAACCGCA----AAAGAUAGUCGCAA-CGACGAAACG---------------------------------------------------------CACGCUUUAGCAGCUUAA---------------------UAUGCUGCUAGGACU------------------------CCUUCUNNACUAGCUU----------------GCUUAUGUCCUAGGGGA----UUGAAAGG--------------------------------------------------UCA-UCUUUCAUAGAGAC--GCGUGGAAGCCCU-------------GUCUGGGGUGGAAGCGU--CAAAACU-AAUCAGGC-AA-------GUUAUGCAAUGGCGUGGCGGACCGGAGCUGGGUGGC-------GAAUGGAAA----GAUUCGACUAAGCA-UGUAG----------------------UACUGAGGAUGU------AGUAUUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_LEM2
Enterobacteriales
Wiggl_gloss GGGGCUG----AUUAUGGA--UUCGACGAAAUAAAC-----AAAACUA-AAGAUGCAUGU--CGAGC--AGAGGUGG-A-CUCGUAAA------------ACCUCAA----AUUGAUAAUUGCAAAACAUAAGUAC------------------------------------------------AACGAGCCUGCUCUAUUAGCAGCUUAA------------------------UUAGAAUAAAAUCUUAGGCUC---------------CUUCUUAGAUAUAUU-----------------AUCUCUAGAUGUAUCA-----AUAGAAG---------------------------------------------------UCAAA---AUUAGAGAUC--GCGA-UAUGAACGG----------GCUUGUACGUUCC-UACGC--UAAAAUAA-UACAAGA-UA-------AUUUUUAGUUCACACUUCUUUCUGUAGAACUAAAAAU--------AUUUAA-----GAA-AGAAUAAACA-UGUAG----------------------UAUCAAUAGAAU------UGAAGUUUCGGAC-GCGGGUUCAAAUCCCGC-CAGCUCCAuau Wiggl_gloss
Bloch_flori GGGGCUG----AUUUAGGU--UUCGACUGAAUGUCU-----UUGUGUUUGCAGUGCAUGU--CGAGG--GGAGAUAG-GCCUCGUAAAA---------AAAUCUCAA-----AAAAUAAUUGCAAAAAAUAAAUAU------------------------------------------------AAUGAACCUGUUGCAUUAGCAGCUUAA----------------------UUGGGUUAAUAACCUAAAGGUUC---------------CCUCUUAAUUUUUUUGUU--------------ACUCUUAACAAGAAAAUCAUUAUCUCAUAAGAGG---------------------------------------------UCUAUA--AAUAAGAGCG--CUCA-UUAUAAAGU-----------GCCUAACUCUAUAAUGAUAAGAAUAAAAAUUAGAGC-UA------AUUGAUUAAUUGACAUGAUCUUAAGUCAUUUUUCAAU---------AAAAUA----UUAAAGAUCUAAACA-UGUAG---------------------UAUCUGGA-AAAUAU----AAGAAUUCUGGAC-GCGGGUUCGAAUCCCGC-CAGCUCCAuuu Bloch_flori
Bloch_penns GGGGCUG----AUUUUGGA--UUCGACGGAGUAUCU-----UGUUAUUUAAAGUGCAUGC--CGAGG--UGAGGCAG-GCCUCGUAAAA----------AGCCUCAA-----AAGAUAAAUGCAAAUAAUACUACA---------------------------------------------UAUAGAGAAUCUGUUGCUUUAGCAGCUUAA---------------------AUCAGACUAAUAUUCUGAAGGUUC---------------CCUCUCGUUUCAAUAUUU--------------ACUCUUAGAUAUUAAAAAAUAAAUAGAGAGG------------------------------------------------CCAUAUA-AAUAAGAGUGC-GCGU--AAAUGCUU-----------GCUUUUGGCUUA--ACGU--UAAGUAUA--AAAAGC-UA------GUUGGUUAG-UGAUUGGUCUUGAUAUAUCUACGCCAAU------UAAAUGUAA---UUCAAGACCUAAGCA-UGUAG---------------------GUUACUAAAAAUAAA----AAGAAUUCUGGAC-GCGGGUUCGAACCCCGC-CAGCUCCACCA Bloch_penns
Uncul_aphi1 GGGGCUG----AUUCUGGA--UUCGACGGGAUAAGC-----AAAGCCC-AAGGUGCAUGC--CGAGG--GGCGGUU--GCCUCGUAAAA-----------AACCGUG---AAAAAAUAGUNNNNNNNNNNNNNNNN------------------------------------------------------NNNNNNNNNNNNNNNNNNNNN---------------------NNNNNNNNNNNNNNN------------------------NNNNNNNNNNNNNNNNNN--------------NNNNNNNNNNNNNNNNN--NNNNNNNNNN--------------------------------------------------NNNNN---NNNNNNNNNNN-NNNNNNNNNNNN------------NNNNNNNNNNNNN-NNNNN-NNNNNNNN-NNNNNNNN-NN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNNNNN-NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_aphi1
Uncul_aphi2 GGGGCUG----UUUUUGGA--UUUGACAAAAUUAUC-----AACAGAGUAAAGUGCAUGC--CGAGG--AACGGUUU-GCCUCGAUAA-----------AAGCCGUA---AAAUAAUAGCUGCAAAUAAUAAACAA------------------------------------------------------CACUACGCUUUAGCAGCUUAA---------------------AAAACUGUAUAAAGC------------------------CCUUUCUUCUCAGCCUCC---------------UCUCUUAGGACGAGAA-AUAAAGAAAGG--------------------------------------------------UCAAA---AAAAGAGAAAA-ACAUGAACAUCA------------AGCUUGACGAUGA-CAUGN-NNNNNNNN-NNNNNNNN-NN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNNNNN-NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN-NNNNNNN-NN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Uncul_aphi2
Buchn_aphi1 GGGGCUG----UUUUUGGA--UUUGACAAAAUUAUC-----AACAAAGUAAAGUGCAUGC--CGAGG--AACGGUUU-GCCUCGAUAA-----------AAGCCGUA---AAAAAAUAAUUGCAAAUAAUAAACAA------------------------------------------------------AACUACGCUUUAGCAGCUUAA---------------------AAAACUGAAUAAAGC------------------------CCUUCCUUCUUAUCCUCC--------------UUCUCUUAGGAUGAGAA--AACAGGAAGG--------------------------------------------------UCAGA---AAAAGAGAAAA-ACGUGGAUAUCA------------AGCUUGACGAUAA-CACGA-AGUAGUUU-UUUCAAGC-UA--------UAUACCUAAUAUGUGUUUUUCCAAAUUAGGUAAU--------GAAUUCAAUAAA-GAAAAAACUAAGCA-UGUAG----------------------GGCUUUAUUAGU------AGAAAUUUUGGAC-GCGGGUUCGAAUCCCGC-CAGCUCCAaaa Buchn_aphi1
Buchn_aphi2 GGGGCUG----UUUUUGGA--UUCGACAAAGUUAUC-----AAAAAAGUAAAGUGCAUGC--CGAGG--AACGGUUU-GCCUCGAUAAA----------AAACCGUA---AAAAAAUAGCUGCAAAUAAUAAACAA------------------------------------------------------AACUACGCUUUAGCAGCUUAA---------------------AAAACUGUAUAAAGC------------------------CCUUUCAUCUCUGACUUC---------------UCUCUUGAGAACGAGAAAUUUUUAAGAAAGG-----------------------------------------------CCGACAUUUAAAGAGAAAA-AUGUGAGCACUA------------UGCUUGAUAGUGA-CACAA-AAUUAAUUU-UUCAAGC-UA--------UAAGCUUAAAAUGAGUUUUUCCAAAUUAAGCAAU--------GAAAA-AAUAAA-GAA-AAACUAAGCA-UGUAG---------------------UAUCUUUAUUUAU------AGAAAUUUUGGAC-GCGGGUUCAAAUCCCGC-CAGCUCCAaaa Buchn_aphi2
Buchn_aphi3 GGGGCUG----AUAUUGGA--UUUGACAAAAUUAUU-----GAAAACU-GAUGUGCAUGC--CGAGG---AUGGUUU-GCCUCGUUAAA----------AAACCAUA----AAAAAUAGUAGCAAAACAAAAUCAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAAUCUGAAUAAAGC------------------------CCUUCUUUUAAACAUAU----------------UCUCUUAAUGUUUAAUUUAUAUAGAAGG--------------------------------------------------UUAAU--CUAAAGAGAUC--GCAACUCAAAUCUA----------UUUUGAAAGAUUUUUUGUUGCUAAAUAAAAACUUCAAAAUA-------UAUAUCUAUAAUGAGUCUAUACAUCGAUAGAUAA--------GAAAAGAUA-----AUA-GACUAAGCA-UGUAG---------------------UAUCUGAAGUCGU------AAAAAUUUUGGAC-GCGGGUUCGAAUCCCGC-CAGCUCCAaaa Buchn_aphi3
Phorh_asymb GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAA-----------AAGCCGCA---AAAAAAUAGUUGCAAACGACAACGAA---------------------------------------------------------UACGCACUAGUAGCUUAA---------------------UAACCUGCAUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGAUCA--AGGGAGG--------------------------------------------------UCAAACCUAAAAGAGAUC--GCGU-GGAUGCCUU-----------GCCUGGGGUU-GAAGCGU--UAAAUCUAA-UCAGGC-UA-------GUUUGUUAGUGGCGUGUCUAUCCGCAGCUGGCAAGU-------GAAUGUAAA----GAUUAGACUAAGCA-UGUAG----------------------UACCAAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Phorh_asymb
Phorh_lumin GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAA-----------AAGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAA---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCGCAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGAUCA--AGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAUGCCUU-----------GCCUGGGGUU-GAAGCGU--UAAAUCUAA-UCAGGC-UA-------GUUUGUGAGUGGCGUGUCUGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAUUAGACUAAGCA-UGUAG----------------------UACCAAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Phorh_lumin
Shige_dyse1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGACGU------AGGAAUUCCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_dyse1
Shige_dyse2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGACGU------AGGAAUUCCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_dyse2
Shige_boydi GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGACGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_boydi
Shige_flexn GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_flexn
Shige_sonne GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Shige_sonne
Esche_coli1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli1
Esche_coli2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCACAGCUGGCAAGC-------GAAUGUAAA----GAC-URACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGAAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli2
Esche_coli3 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGACGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli3
Esche_coli4 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGAUGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Esche_coli4
Entbr_cloac NNNNNNN----NNNNNNNN--NNNNNNGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUU-GCCUCGUUAA-----------AAGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCUGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGAUGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAGCCCU------------GCCUGGGGUUGAAGCGU--UAAAACU-AAUCAGGC-UA-------GUUCGUUAGUGGCGUGUCUGUCCGCAGCUGGCGUGC-------GAAUGUAAA----GAC-AAACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGAAAUUUCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Entbr_cloac
Entbr_aerog NNNNNNN----NNNNNNNN--NNNNNNGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACUCAAAAGAGAUC--GCGC-GGAUGCCCU------------GCCUGGGGUUGAAGUGC--UAAAACU-AAUCAGGC-UA-------GUUCGUUAGUGGCGUGUCUGUCCGCAGCUGGCGUGC-------GAAUGUAAA----GAC-AAACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Entbr_aerog
Entbr_sakaz GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAUGCCCU------------GCCUGGGGUUGAAGCGU--UAAA-ACUAAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGCUGCCAGGC-------GAAUGUAAA----GACCGGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Entbr_sakaz
Provi_rettg NNNNNNN----NNNNNNNN--NNNNNNGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUU-GGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAUGCCUU------------GCCUGGGGUUGAAGCGU--UAAA-CUUAAUCAGGA-UA-------GUUUGUUGGUGGCGUGUCUGUCCGCAGCUGGCAAAU-------GAAUUCAAA----GACUAGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGAAAUUUCNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Provi_rettg
Serra_marc1 NNNNNNN----NNNNNNNN--NNNNNNGGGAUUUGC-----GAAGCCC-UAGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UACCCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGACGUCCU------------GCCUGGGGCUGAAGCGU--UAAA-CUCAAUCAGGC-UA-------GUCUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGC-------GAAUGUAAA----GAUUGGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Serra_marc1
Serra_marc2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAGCCC-UAGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UACCCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAUGUCCU------------GCCUGGGGCUGAAGCGU--UAAA-CUCAAUCAGGC-UA-------GUCUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGC-------GAAUGUAAA----GAUUGGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Serra_marc2
Panto_stewa GGGGCUG----AUUCUGGA--UUCGACGGGAUU-GU-----GAAGCCU-UAGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUGAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------ACUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAUGCCCU------------GCCUGGGGUUGAAGCGU--UAAA-CUUAAUCAGGC-UA-------GUCUGUCAGUGGCGUGUCCGUCCGCAGCUGACCGGC-------GAAUGUAAA----GACUGGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Panto_stewa
Prots_mirab GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAGAUAGUCGCAAACGACAAUCAA------------------------------------------------------UAUAAAGCACUAGCAGCUUAA---------------------UAACCUGCCUAGAGC------------------------CUUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA--UAAAGAGGAG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAUGCCUA------------GCUUGGGGUUGAAGCGU--UAAA-UUUAAUCAAGC-UA-------GCUUAUUUGUGGCGUGUCUGUCCGCAGCAAGUAAGU-------GAAUUUAAA----GACUAGACUAAGCA-UGUAG----------------------UGCCGCGGAUGU------AGAAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Prots_mirab
Prots_vulga NNNNNNN----NNNNNNNN--NNNNNNGGAAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAGAUAGUCGCAAACGACAAUCAG------------------------------------------------------UACGAAGCACUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGU-GGAAACCUA------------GCUUGGGGUUGAAGCGU--UAAA-UAUAAUCAAGC-UA-------GCUUAUUUGUGGCGUGUCUGUUCGCAGCAAGUAAGU-------GAAAUUAAA----GAC-AGACUAAGCA-UGUAG----------------------UGCCGCGGAUGU------AGGAAUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Prots_vulga
Klebs_pneum GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCUGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAUCU-AAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCUGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Klebs_pneum
Klebs_aerog NNNNNNN----NNNNNNNN--NNNNNNGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCCUAAGACGGGGA-AUAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAAGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACU-AAUCAGGC-UA-------GUUUGUCAGUGGCGUGUCCGUCCGCAGCUGGCCAGC-------GAAUGUAAA----GACUGGACUAAGCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Klebs_aerog
Erwin_carot GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----AAAGCCC-AAGGUGCAUGC--CGAGG--GGCGGUUU-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGGGC--UAAAUCU-AAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCUGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGACGGUAG------AGUAGUUCCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Erwin_carot
Erwin_amylo GGGGCUG----AUUCUGGA--UUCGACAGGAUUUGC-----AAAGCCC-UAGGAGCAUGC--CGAGG--GGCGGUUU-GCCUCGUUAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC------------------------------------------------UUCGCACCUGCUGCUUUAGCAGCUUAA-------------UCAGCUUAAUAAACUGAAGGUGU------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAAACUAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAUCC-AAUCAGGC-UA-------GUUUGUUAGUAGCGUGUCCGUUCGCAGCUAACCGGC-------GAAUGUAAU----AACUGGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUCUGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Erwin_amylo
Erwin_chrys GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC------------------------------------------------UUCGCACCUGCUGCUUUAGCAGCUUAA-------------UCAGCCUAAGAAACUGAAGGUGU------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAUCC-AAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCUGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GACCAGACUAAGCA-UGUAG----------------------UACCGACGGUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Erwin_chrys
Salmo_bongo GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAGACCCU-------------GCCUGGGGUUGAAGCGU--UAAAACG-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCGGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_bongo
Salmo_ente1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAACC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGCGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACG-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente1
Salmo_ente2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGCGGAUGCCCU-------------GCCUGGGGUUGAGGCGU--UAAAACG-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente2
Salmo_ente3 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAACC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACG-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente3
Salmo_ente4 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG-GGCUGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACG-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-AGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Salmo_ente4
Salmo_ente5 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAACC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGCCUU-------------GCCUGGGGUUGAAGCGU--UAAAACG-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-AGACUAAGCA-UGUCC----------------------UUCCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente5
Salmo_ente6 GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGCGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACG-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Salmo_ente6
Citbr_roden GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACU-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Citbr_roden
Uncult_RCA1 NNNNNNN----NNNNNNNN--NNNNACAAGAUUCAC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGUAG-GCCUCGUUAAC----------AAACCGCA----AAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UACCCUGCUUAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA--UAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCAUGGAAGUCCU-------------GCCUGGGGCUAAAGUGC--UAAAUCU-AAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCAUCCGCAGCUGACCGGC-------GAAUGUAAA----GAUUGGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGCAAUUUCGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_RCA1
Uncult_VLS1 NNNNNNN----NNNNNNNN--NNNNACAGGAUUUGC-----AAAGCCC-UAGGAGCAUGC--CGAGG--GGCGGUUU-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUUGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GUUCUUAAGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAACUC--GCGUGAAUACCUU-------------GCCUGGGGUUGAAGCGC--UAAAAUCUAAUCAGGC-UA-------GUUUGUCAGUGGCGUGUCCGUUCGCAGCUGACCGGC-------GAAUGUAAA----GAU-GGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUCUGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS1
Uncult_VLS3 NNNNNNN----NNNNNNNN--NNNNACAGGAUUUGC-----AAAGCCC-UAGGAGCAUGC--CGAGG--GGCGGUUU-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUUGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GUUCUUAAGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAACUC--GCGUGAAUACCUU-------------GCCUGGGGUUGAAGCGC--UAAAAUCUAAUCAGGC-UA-------GUUUGUCAGUGGCGUGUCCGUUCGCAGCUGACCGGC-------GAAUGUAAA----GAU-GGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUCUG-AC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS3
Uncult_VLS4 NNNNNNN----NNNNNNNN--NNNNACAGGAUUUGC-----AAAGCCC-UAGGAGCAUGC--CGAGG--GGCGGUUU-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUUGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GUUCUUAAGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAACUC--GCGUGAAUACCUU-------------GCCUGGGGUUGAAGCGC--UAAAAUCUAAUCAGGC-UA-------GUUUGUCAGUGGCGUGUCCCUCCGCAGCGUG-UUGC-------GAAUGUAAA----GAG-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGUAAUUUUGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS4
Uncultu_WW1 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGGGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA--UAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGCGGAUGUCCU-------------GCCUGGGGCUGAAGUGC--UAAAACU-AAUCAGGC-UA-------GUUCGUUAGUGGCGUGUC-UGCCGCAGCUGGCGUGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW1
Uncult_RCA2 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGAUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCUCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA--UAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGCGGAUGUCCU-------------GCCUGGGGCUGAAGUGC--UAAAACU-AAUCAGGC-UA-------GUUCGUUAGUGGCGUGUCUGUCCGCAGCUGGCGUGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_RCA2
Uncultu_WW2 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGGGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA--UAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGCGGAUGUCCU-------------GCCUGGGGCUGAAGUGC--UAAAACU-AAUCAGGC-UA-------GUUCGUUAGUGGCGUGUCUGUC-GCAGCUGGCGUGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW2
Uncultu_WW3 NNNNNNN----NNNNNNNN--NNNNACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCACCCUAGCUUCC---------------GCUCUUAAGACGGGGA--UAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGCGGAUGUCCU-------------GCCUGGGGCUGAAGUGC--UAAAACU-AAUCAGGC-UA-------GUUCGUUAGUGGCGUGUCUGUCCGCAGCUGGCGUGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW3
Uncultu_QL1 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA----AAAAAUAGUCGCAAACGUCGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA--UAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGCGGAUGUCCU-------------GCCUGGGGCUGAAGUGC--UAAAACU-AAUCAGGC-UA-------GUUCGUUAGUGGCGUGUCUGUCCGCAGCUGGCGUGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GUGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_QL1
Uncultu_WW4 NNNNNNN----NNNNNNNN--NNNNACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGGAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA--UAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGACC--GCGCGGAUGUCCU-------------GCCUGGGGCUGAAGUGC--UAAAACU-AAUCAGGC-UA-------GUUCGUUAGUGGCGUGUCUGUCCGCAGCUGGCGUGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW4
Uncult_VLS6 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGAUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAGGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAUCU-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCUGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS6
Uncultu_FS2 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAGGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAUCU-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCUGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_FS2
Uncultu_WW5 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAGGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACU-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCUGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW5
Uncultu_WW6 NNNNNNN----NNNNNNNN--NNNNACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCUGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAGGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACU-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCUGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------CGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW6
Uncult_VLW1 NNNNNNN----NNNNNNNN--NNNNACGGGAAUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGGGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACU-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-AGACUUAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW1
Uncult_VLS7 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACG-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCCGCCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-AGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS7
Uncult_VLS8 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCGCGUAAAA-----------AGCCGCA----AUAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAAGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACUUAAUCAGGC-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS8
Uncult_VLS9 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAGCCC-UAGGAGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UACCCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAUGUCCU-------------GCCUGGGGCUGAAGCGU--UAAACUC-AAUCAGGC-UA-------GUCUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGC-------GAAUGUAAA----GAU-UGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLS9
Uncult_VLW2 NNNNNNN----NNNNNNNN--NNNNACGGGAUU-GU-----GAAGCCU-UAGGAGCAUGC--CGAGG--GGCGGUUU-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CUUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA-UC-AAGAGAAG--------------------------------------------------UCAAACCCAAAAGAGCUC--GUGUGGAUGUCUU-------------GCCUGGGGCUGAAGCAC--UAAAACU-AAUCAGGA-UA-------GUUUGGUAAUGGCGUGUCUAUCCGCAGUUGCCCGGC-------GAAUGUAAA----GAUAUGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncult_VLW2
Uncultu_WW7 NNNNNNN----NNNNNNNN--NNNNACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--GGCGGUUG-GCCUCGUAAAA-----------AGCCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UGCGCUUUAGCAGCUUAA---------------------UAACCUGCUAAGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-AUAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAAGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAACU-AAUCAGGC-UA-------GUUUGUCAGUGGC--GUUCCUCCGCAGCUGGCCAGC-------GAAUGUAAA----GACUGGACUAAGCA-UGUAG----------------------UGCCGAGGAUGU------AGGAAUUUCGGAC-GCGNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW7
Uncultu_WW8 NNNNNNN----NNNNNNNN--NNNNACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG---GCGGUUG-GCCUCGUAAAA-----------AGCCGCAAAAAAAAUAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCUGAGC------------------------CCUCUCUCCCUAGCUUCC---------------GCUCUUAAGACGGGGA-UCAAAGAGAGG--------------------------------------------------UCAAACCCAAAAGAGAUC--GCGUGGAGGCCCU-------------GCCUGGGGUUGAAGCGU--UAAAUCU-AAUCAGGC-UA-------GUCUGGUAGUGGCGUGUCUGUCCGCAGGUGCCAGGC-------GAAUGUAAA----GAC-UGACUAAGCA-UGUAG----------------------UACCGAGGAUGU------AGGAAUUUCGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_WW8
Yersi_pesti GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGU-G-GCCUCGUAAAA-----------AACCGCA--AAAAAAAUAGUUGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAGCUC--GUGUGGAAACCUU-------------GCCUGGGGUGGAAGCAU--UAAAAC-UAAUCAGGA-UA-------GUUUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGC-------GAAUGUAAU----GAUUGGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_pesti
Yersi_frede GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGU-G-GCCUCGUAAAA-----------AACCGCA---AAAAAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UACCCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAAACUAAAAGAGCUC--GUGUGGAAACCUU-------------GCCUGGGGUGGAAGCAU--UAAAAC-UAAUCAGGA-UA-------GUUUGUCAGUGGCGUGUCCAUCCGCAGCUGGCCGGC-------GAAUGUAAU----GAUUGGACUAAGCA-UGUAG----------------------UACCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_frede
Yersi_pseud GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGU-G-GCCUCGUAAAA-----------AACCGCA--AAAAAAAUAGUUGCAAACGACGAAAAC---------------------------------------------------------UACGCACUAGCAGCUUAA---------------------UAACCUGCUUAGAGC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAGCUC--GUGUGGAAACCUU-------------GCCUGGGGUGGAAGCAU--UAAAAC-UAAUCAGGA-UA-------GUUUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGC-------GAAUGUAAU----GAUUGGACUAAGCA-UGUAG----------------------UGCCGACGGUGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_pseud
Yersi_enter GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGG-AG-GCCUCGUAAAA-----------AACCGCA--AAAAAAAUAAUUGCAAACGACUCGCAA------------------------------------------------UACGAAUCUGCUGCUUUAGCAGCUUAA-------------UCAGCCUAAGAAACUGAAGAUUC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAGAUC--GCGUGGACACCUU-------------GCCUGGGGUGAAAGCGU--UAAACC-CAAUCAGGA-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUAACCGGC-------GAAUGUAAU----GACUGGACUAAGCA-UGUAG----------------------UGCCGACGGCGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_enter
Yersi_inmed GGGGCUG----AUUCUGGA--UUCGACGGGAUUCGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGA-G-GCCUCGUAAAA-----------AACCGCA--AAAAAAAUAAUUGCAAACGACUCGCAA------------------------------------------------UACGAAUCUGCUGCUUUAGCAGCUUAA-------------UCAGCCUAAGAAACUGAAGAUUC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAGAUC--GCGUGGACACCUU-------------GCCUGUGGUGAAAGCGU--UAAACC-CAAUCAGGA-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUAACCGGC-------GAAUGUAAU----GACUGGACUAAGCA-UGUAG----------------------UGCCGACGGCGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_inmed
Yersi_molla GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGA-G-GCCUCGUAAAA-----------AACCGCA--AAAAAAAUAAUUGCAAACGACUCGCAA------------------------------------------------UACGAAUCUGCUGCUUUAGCAGCUUAA-------------UCAGCCUAAGAAACUGAAGAUUC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAGAUC--GCGUGGACACCUU-------------GCCUGGGGUGAAAGCGU--UAAACC-CAAUCAGGA-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUAACCGGC-------GAAUGUAAU----GACUGGACUAAGCA-UGUAG----------------------UGCCGACGGCGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_molla
Yersi_berco GGGGCUG----AUUCUGGA--UUCGACGGGAUUUGC-----GAAACCC-AAGGUGCAUGC--CGAGG--UGCGGA-G-GCCUCGUAAAA-----------AACCGCA--AAAAAAAUAAUUGCAAACGACUCGCAA------------------------------------------------UACGAAUCUGCUGCUUUAGCAGCUUAA-------------UCAGCCUAAGAAACUGAAGAUUC------------------------CCUCUCUCCCUAGCCUCC---------------GCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCUAAAAGAGAUC--GCGUGGACACCUU-------------GCCUGGGGUGAAAGCGU--UAAACC-CAAUCAGGA-UA-------GUUUGUUAGUGGCGUGUCCGUCCGCAGCUAACCGGC-------GAAUGUAAU----GACUGGACUAAGCA-UGUAG----------------------UGCCGACGGCGU------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Yersi_berco
Uncul_weevi GGGGCUG----AUCCUGGA--UUCGACGGGAUUUGU-----GAAACUC-AAGGUGCAUGC--CGAGG--UGAGGUUG-GCCUCGUAAAA-----------AAGCCUCAAAAAAAAAUAAUUGCAAACGACUCGCAA------------------------------------------------UACGAAUCUGCUGUGUUAGCAGCUUAA-------------UCAGCCUAAUAAACUGAAGAUUC------------------------CCUCUCUCCCUAGCCUCC---------------UCUCUUAGGACGGGGA--UCAAGAGAGG--------------------------------------------------UCAAACCCAAAANNNNNN--NNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNN--NNNNNN-NNNNNNNNN-NN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNN----NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_weevi
Pasteurellales
Mannh_haemo GGGGCUG----AUUUUGGA--UUCGACGGGAUUGGC-----GAAGCCC-AAGGUGCAUGU--CGAGG--UGCGGUAG-GCCUCGUAAAC----------AAACCGCA---AAAUAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUUUAAAGC-----------------------CUUAUCUCCUCAGCUUCC---------------GCUCGUAAGACGAGGG--CAAAGAUAAG--------------------------------------------------UCAC-CCAAAACGAGAUC--GUGUGGACGCCGCC-----------GCUUUAGGAUCGAAACAC--UAAA-UUAAAUAAAGC-UA-------GUUUAUUCAUUGCGUGUCUGUCCGCUGUGAAUAAGC-------GAAAUUAAA----GACUAGACUAAACA-UGUAG----------------------UACUGAAGGUAG------AGAAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Mannh_haemo
Mannh_succi GGGGCUG----AUUCUGGA--UUCGACGGGAUUGGC-----GAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCUCCCUAGCUUCC---------------GCUCGUAAGACGGGGA--UCAAGCGGAG--------------------------------------------------UCAAACCUAAACGAGAUC--GUGUGGACGCUUCG-----------GCUUGGAGAUCGAAACAC--UAAA-UUGAAUCAAGC-UA-------GUUUAUUCUUCGCGUGUCUGUCCGCAGGGGGUAAAU-------GAAAUUAAA----GACUAGACUAAACG-UGUAG----------------------UGCUGAAGGUAG------AGUAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Mannh_succi
Haemp_ducre GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGUCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCGCCCUAGCUUUC---------------GCUCGUAAGACGGGGA--GCACGCGGAG--------------------------------------------------UCAAACCAAAACGAGAUC--GUGUGGACGCUUCG-----------GCUUGUAGAUCGAAACAC--CAAA-UUGAAUCAAGC-UA-------GUUUAUUUCUUGCGUGUCUGUCCGCUGGAGAUAAGC-------GAAAUUAAA----GACCAGACUAAACG-UGUAG----------------------UACUGAAGAUAG------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Haemp_ducre
Haemp_ducr2 NNNNNNN----NNNNNNNN--NNNNACGGGAUUAGC-----GAAGUCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAA-C----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCGCCCUAGCUUUC---------------GCUCGUAAGACGGGGA--GCACGCGGAG--------------------------------------------------UCAAACCAAAACGAGAUC--GUGUGGACGCUUCC-----------GCUUGUAGAU-GAAACAC--UAAA-UUGAAUCAAGC-UA-------GUUUAUUUCUUGCGUGUCUGUCCGCUGGAGAUAAGC-------GAAAUUAAA----GACCAGACUAAACG-UGUAG----------------------UACUGAAGAUAG------AGUAAUUUCGGAC-CCGGGUUCGACUCNNNN-NNNNNNNNNNN Haemp_ducr2
Haemp_infl1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCGCUCCAGCUUCC---------------GCUCGUAAGACGGGGA--UAACGCGGAG--------------------------------------------------UCAAACCAAAACGAGAUC--GUGUGGAAGCCACC-----------GUUUGAGGAUCGAAGCAC--UAAA-UUGAAUCAAAC-UA-------GCUUAAGUUUAGCGUGUCUGUCCGCA-UGCUUAAGU-------GAAAUUAAA----GACGAGACUAAACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl1
Haemp_infl2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCGCUCCAGCUUCC---------------GCUCGUAAGACGGGGA--UAACGCGGAG--------------------------------------------------UCAAACCAAAACGAGAUC--GUGUGGAAGCCACC-----------GUUUGAGGAUCGAAGCAC--UAAA-UUAAAUCAAAC-UA-------GCUUAAGUUUAGCGUGUCUGUCCGCA-UGCUUAAGU-------GAAAUUAAA----GACGAGACUAAACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl2
Haemp_infl3 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----AAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCGCUCCAGCUUCC---------------GCUCGUAAGACGGGGA--UAACGCGGAG--------------------------------------------------UCAAACCAAAACGAGAUC--GUGUGGAAGCCACC-----------GUUUGAGGAUCGAAGCAC--UAAA-UUGAAUCAAAC-UA-------GCUUAAGUUUAGCGUGUCUGUCCGCA-UGCUUAAGU-------GAAAUUAAA----GACGAGACUAAACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl3
Haemp_infl4 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCGCUCCAGCUUCC---------------GCUCGUAAGACGGGGA--UAACGCGGAG--------------------------------------------------UCAAACCAAAACGAGAUC--GUGUGGAAGCCACC-----------GUUUGAGGAUCGAAGCAC--UAAA-UUGAAUCAAAC-UA-------GCUUAAGUUUAGCGUGUCUGUCCGCA-UGCUUAAGU-------GAAAUUAAA----GACGAGACUAAACG-UGUAG----------------------UGCUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_infl4
Haemp_somnu GGGGCUG----AUUUUGGA--UUCGACGGAAUUAGC-----GAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAACAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCAUAGC------------------------CUUCACUCCCUAGCUUUC---------------GCUCGUAAGACGGGGA--UAAAGUGGAG--------------------------------------------------UCAAAUCCAAACGAGAUC--GUGUUGAAGCCGCC-----------GCUUUAGGAUCGAAGCAU--UAAA-UUGAAUAAAGC-UA-------GUUUUUUGAUGGCGUGUCUGUCCGCAGUCAAUUUAC-------GAAAUUAAA----GAUUAGACUAAACG-UGUAG----------------------GACUGAAGGUAG------AGUAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Haemp_somnu
Pasta_multo GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCAUAGC------------------------CUUCUCUCCCCAGCUUCC---------------GCUCGUAAGACGGGGA--UCAAGAGGAG--------------------------------------------------UCAAAUUCAAACGAGAUC--GCGUGGACGCCUCC-----------GCUUGAGGAUCGAAGCGU--UAAA-UUGAAUCAAGC-UA-------GUUUAUCUAUCGCGUGUCUGUCCGCAGUGGGUAAAU-------GAAAUUAAA----GACGAGACUAAACG-UGUAG----------------------UACUGAAGGUAG------AGUAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Pasta_multo
Actbl_actin GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGCCC-GAAGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCCUUUAGC------------------------CUUCGCUCCCCAGCUUCC---------------GCUCGUAAGACGGGGA--UAAAGCGGAG--------------------------------------------------UCAAACCAAAACGAGCUC--GUGUGGAAGCCACC-----------GUUUGAGGAUCGAAGCAU--UAAA-UUAAAUCAAAC-UA-------GCUUAAUUGUCGCGUGUCCGUCCGCA-GGAUUAAGU-------GAAUUUAAA----GACCGGACUAAACG-UGUAG----------------------UGCUAACGGCAG------AGGAAUUUCGGAC-GGGGGUUCAACUCCCCC-CAGCUCCACCA Actbl_actin
Actbl_succi GGGGCUG----AUUCUGGA--UUCGACGGGAUUGGC-----GAAGCCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAU----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCAUUUAGC------------------------CUUCGCUCCCCAGCUUCC---------------GCUCGUAAGACGGGGA--UCAAGCGGAG--------------------------------------------------UCAAACCUAAACGAGAUC--GUGUGGACGCUUCG-----------GCUUGGAGAUCGAAACAC--UAAA-UUGAAUCAAGC-UA-------GUUUAUUCUUCGCGUGUCUGUCCGCAGGGGAUAAAU-------GAAGUUAAA----GACCAGACUAAACG-UGUAG----------------------UGCUGAAGGUAG------AGUAAUUUCGGAC-GCGGGUUCAACUCCCGC-CAGCUCCACCA Actbl_succi
Actbl_pleu1 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGUCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCAUAGC------------------------CUUAUCGCCUCAGCUUCC---------------GCUCGUAAGACGAGGG--CAACGAUAAG--------------------------------------------------UCAC-CCAAAACGAGAUC--GUGUGGACGCCGCC-----------GUUUGAGGAUCGAAACAC--UAAA-UUGAAUCAAAC-UA-------GCUUAUUUCUUGCGUGUCUGUCCGCUGGAGGUAAGU-------GAAAUUAAA----GACCAGACUAAACG-UGUAG----------------------UGCUGAAGAUGG------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Actbl_pleu1
Actbl_pleu2 GGGGCUG----AUUCUGGA--UUCGACGGGAUUAGC-----GAAGUCC-AAGGUGCACGU--CGAGG--UGCGGUAG-GCCUCGUAAAC----------AAACCGCA---AAAAAAUAGUCGCAAACGACGAACAA---------------------------------------------------------UACGCUUUAGCAGCUUAA---------------------UAACCUGCUCAUAGC------------------------CUUAUCGCCUCAGCUUCC---------------GCUCGUAAGACGAGGG--CAACGAUAAG--------------------------------------------------UCAC-CCAAAACGAGAUC--GUGGGGACGCCGCC-----------GUUUGAGGAUCGAAACAC--UAAA-UUGAAUCAAAC-UA-------GCUUAUUUCUUGCGUGUCUGUCCGCUGGAGGUAAGU-------GAAAUUAAA----GACCAGACUAAACG-UGUAG----------------------UGCUGAAGAUGG------AGUAAUUUCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Actbl_pleu2
ALPHA-PROTEOBACTERIA
Mitochondria
Recli_amer1 GGGGAUG----UUUUUAGU-AUUCGACAUAGUGGAAUUUAUUUGUGGAAUUUUUAAAUUUUAUUUUUUUAUCUACUUUUAAGAAGGAUUUUUU****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AAAAACACCUUGUUAAAUAAGUAAAUAAAAAAAAUAAAAUUUAAAUUAUUUUUUUAUAAGAAUGACUAUGGAA-CCGAGGGCGGAUCUCGG-CAUCUCCAuaa Recli_amer1
Recli_amer2 GGGGAUG----UUUUUAGG-AUUCGACAUAGUAAUAUA********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************UAUAUUAACUAUGGAC-CCGAGGGCAGUUCUCGG-CAUCUCCAuuu Recli_amer2
Recli_amer3 GGGGAUG----UUUUUAGA-AUUCGACAUAGUACAAUAUUAUGAGA*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************UUUCGUAGUAACUAUGGAC-CCGAGGGCAGUUCUCGG-CAUCUCCAucu Recli_amer3
Secul_ecuad GGGAAUGAUAUAUACUAGA-GAUCGACAUUCAAAAAUGUAACCAAACAUAAAAAA******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************UUUUUAGACAAUCUAACGAAUGGAC-CCAUGGGCAGUUCAUGG-CAUUCCCAgua Secul_ecuad
Histi_aroid GGGGGUG----UUAAUAA--AUUCGACAUAGUAGC***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GCUACUAUGGAC-CCAUGGGUGGUUCAUGG-CAUUCCCAggc Histi_aroid
Jakob_liber GGGGAUG-----AAUUAGU--UUAGAUAUUUAAGUAAUCCAUGAAAAUUCAUCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAUUUUGUAAUAUUGCUUAGAUAAAA-CCAUGGGCAGUACAUGG-CAUCUCCAcca Jakob_liber
Caulobacterales
Caulb_cresc GGGGCCG------AUCAGC--AUCGACAGACGUG------UAAAGGUGUCUGCUUUCUCU--CGGC---UUGGCCC----ACCGUU-UC-----------GGGCC-----UUUAUCUAAAUGCGAACGAUAACUUC------------------------------------------------GCUGAAGAGUUCGCCGUCGCUGCGUAA--------------------UGCGGUGCAGGUGAAUUCGCC-------------------UCUUAAGU------------------------CCUAG-GGGUUCAGA-----------------------------------------------------------------------UCC-CUAGGCG--GGGCCC-------------------GGAGGGA-GCCU------GCCAACAGAA-UCCCUCCACCU****************************************************GUCCGGCUUCGGCCGAACUAUGGG-GAUAA----------------------ACGCGCACGUAA-----UAAGCGGACUGGAC-CCGGGUGCGAUUCCCGG-CGGCUCCACCA Caulb_cresc
Rhodobacterales
Hyphm_neptu GGGGCCG-----AAAUAGU--GUCGACGGACGUG------UAAAGACGA-GGCUUUCGCU--CGC----UUGAGCU-----GCGUUAGA----------AGCUCAA---AAGCAAAUAGUUGCAAAUGACAACUUU------------------------------------------------GCUGAGGGCGAAUUGCUCGCCGCGUAA---------------------GCGGUGACGGUUUUUCCGA---------------------CCUAAGU------------------------CCUGG-GGCUUCAGA-----------------------------------------------------------------------CCC-CUAGGCG--GGGCCC-------------------GGGGGC--GCCU------GGCAACAGAA--GCCCCCACCU****************************************************GUC----UUCG----GACUAUGGC-GAUAA----------------------ACGCGCGUGUAA-----UAAGCGGCUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Hyphm_neptu
Parcc_denit GGGGCCG-----AAACAGG--AUCGACGAACGUC------UAAAGCUGUUUGCUUUGUCU--CGGUG--AGCUAC----CACCGUCAUC-----------GGUGCA---AAAUGUACAGUUGCCAACGACAACCGU---------------------------------------------------GCUCCGGUGGCUCUGGCUGCGUAA---------------------GCAGCU-CGGGUAACCGAAA--------------------CUUAAGC------------------------CCUUCCGC-CUAG-C-----------------------------------------------------------------------AGCGUAAGGCG--GGGCCC-------------------GCAGGA--GCCU------GGCAACAGAA--UCCUGCACCU****************************************************GUUCGGGUUCGCCCGGACUAUGGA-CAUAA----------------------ACGCGCAGGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Parcc_denit
Rhobr_sphae GGGGCCG-----AAACAGG--AUCGACGAACGUC------UAAAGGGGUUGGCUUUGUCC--CGGUG--AGGUAC----CACCGUUAUC-----------GGUCCG---AAAAGUACAGUUGCCAACGACAACCGU---------------------------------------------------GCUCCGGUGGCUCUGGCUGCGUAA---------------------GCAGUU-CGAGUUAUCGAAA--------------------CUUAAGC------------------------CCUUGCGC-UUAG-C-----------------------------------------------------------------------CGCGUAAGGCG--GGGUUC-------------------GCAGGU--ACCU------GGCAACAGAA--ACCUGCACUU****************************************************GUCCGGGGCAACCCGGACUAUGGA-CAUAA----------------------ACGCGCUCGUCA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Rhobr_sphae
Uncul_bone2 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNN--NNNNN--NNNNNN----NNCCGUUAUC-----------GGCGUA---AAAUGUACAAUGGCAAAUGACAAUCGU---------------------------------------------------GCUCCAAUGGCGAUGGCCGCGUAA---------------------GCGACC-GGAACUAUUGAAA--------------------CUUAAG-------------------------UCGUAACGUUUAG-G-----------------------------------------------------------------------GACCUAAGGC---GGGUUUC------------------GCAGGU--ACCU------GGCAACAGAA--ACCUGCACUU****************************************************NNNNNNNNNNNNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNN Uncul_bone2
Jannas_CCS1 GGGGUCG-----AAAUAGG--AUCGACGAACGUC------UAAAGGGGUUAGCUUUGUCC--CGGUG--AGUUAC----CACCGUUAUC-----------GGUACA---CAUCGUACAGUUGCAAAUGACAACCGU------------------------------------------------GCUCCGGCAAUGGCUCUCGCAGCGUAA---------------------GCUGUC-CUGAGUCGCCGA--------------------CUUUAAGC------------------------CCUAGCGC-CUAG-C-----------------------------------------------------------------------CGCGUUAGGCG--GGGUUC-------------------GCAGGC--ACCU------GGCAACAGAA--GCCUGCACUU****************************************************GUUCC--UUCG--GGAGCUAUGGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGACUCCACCA Jannas_CCS1
Uncul_whal2 GGGGUCG-----AAAUAGG--AUCGACGGACGUC------UAAAGAUGUUUGCUUUUGCU--CGGUG--AGUUAC----CACCGUUAUC-----------GGUACA---UUUAAGCUAGUUGCAAAUGACAACAGA---------------------------------------------------GCUCCAGUUGCCCUGGCUGCGUAA---------------------GCAGUC-CGGAAUACUGAAAA-------------------CUUAGU-------------------------CCUAGGCU-UUGC--------------------------------------------------------------------------AGCCUAGGCG--GGGUCC-------------------GCAGGC--ACCU------GGCAACAGAA--GCCUGCACUU****************************************************GUCUCG-CUUG-CGGGACUAUGGU-GAUAA----------------------ACGCGCAUGUAA-----UAAACGGAUCGGAC-CCGGGGGCGGUACCCGG-CGACUCCACCA Uncul_whal2
Silic_pomer GGGGCCG-----AAACAGG--AUCGACGGACGUC------UAAAGGGGUUAGCUUUGUCU--CGGCG--GGGUAC----CACCGUUAUC-----------GGUCCG---CAAAGCAUAAUUGCCAACGACAAUCGU---------------------------------------------------GCUCCGGUUGCUCUGGCUGCGUAA---------------------GCAGUC-CGAAACACCGAAA--------------------CUUAAGC------------------------CCUUGCGC-CUAG-C-----------------------------------------------------------------------AGCGUAAGGCG--GGGUUC-------------------GCAGGU--ACCU------GGCAACAGAA--ACCUGCAUUU****************************************************GUUCC--CUCG--GGAACUAUGGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGUUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Silic_pomer
Silic_TM104 GGGGCCG-----AAAUAGG--AUCGACGGACGUC------UAAAGGGGUUAGCUUUGUCU--CGGCU--GUCUGC----CACCGUUACC-----------GGCGAA---AACAGUACAAUUGCAAACGACAAUCGU---------------------------------------------------GCUCCGGUUGCUCUGGCUGCGUAA---------------------GCAGUU-CGAGUCGAACCGA-------------------CUUUAAGU------------------------CCUAGCGC-CUAG-C-----------------------------------------------------------------------CGCGUUAGGCG--GGGUUC-------------------GCAGGU--ACCU------GGCAACAGAA--ACCUGCACUC****************************************************GUUCC--UUCG--GGAACUAUGGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Silic_TM104
Rhizobiales
Agrbm_tume1 GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU--CGGC--AUGAUACC----GCCGUUAUC-----------GGGUCA----CAAGUGUAGUUGCAAAUGACAACAAC------------------------------------------------GCUAAGGAAUACGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAUUCCGCU-------------------CU-AAGU------------------------CCUUACGG-UUAG-C-----------------------------------------------------------------------CCCGUAAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACCU****************************************************GC-CGGGGCAACCCG-GCUAUGGC-GAUAA---------------------ACGGUCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_tume1
Agrbm_tume2 GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU--CGGC--AUGAUACC----GCCGUUAUC-----------GGGUCA----CAAGUGUAGUUGCAAAUGACAACAAC------------------------------------------------GCUAAGGAAUGCGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAUUCCGCU-------------------CU-AAGU------------------------CCUUACGG-UUAG-C-----------------------------------------------------------------------CCCGUAAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACCU****************************************************GC-CGGGGCAACCCG-GCUAUGGC-GAUAA---------------------ACGGUCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_tume2
Agrbm_vitis GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU--CGGC--AUGAUACC----ACCGUCAUC-----------GGGUCA----CAAGUGUAGUUGCAAAUGACAACAAC------------------------------------------------GCUCAGGGUUACGCUGUCGCUGCUUAA--------------------UCGCGGU-GCCAGAAACCCAAA-------------------CU-AAGU------------------------CCUUACGG-GUAG-C-----------------------------------------------------------------------ACCGUAAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUU****************************************************GCCGGUGCUUGCAUCGGCUAUGGC-AAUAA---------------------ACGGUCGGUGAAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_vitis
Rhizm_legum GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-UCUUUUUGCU--CGGC--AUUGUACC----GCCGUUAUC-----------GGGCUA----AAAUUGUAGUUGCAAACGACAACUAU---------------------------------------------------GCGGAAGCUCGUCUCGCUGCUUAA--------------------UCGCGGU-GUGACACUUCAAU--------------------CA-AAGU------------------------CCUAGUGG-UUCG-C-----------------------------------------------------------------------ACCUCUAGGCG--GGGUCC-------------------GAAGGC--ACCU------GGCAACAGAA--GCCUUCACCU****************************************************GCCGGCUUUCGGGUCGGCUAUGGC-GAUAA---------------------AUGAGCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Rhizm_legum
Uncul_whal6 GGGGGCG-----AAACAGG--AUCGACGAGGGUG------UAAAGAGCG-ACUUUUUGUU--CGGU--AUUGUACC----ACCGUUAUC-----------GGGCUA----AACUUGUAGUUGCAAAUGACAACUAU---------------------------------------------------GCGGAAGCUCGUCUCGCUGCUUAA--------------------UUGCGGU-GUGACACUUCA---------------------CAUUAAGC------------------------CCUAGAGG-GUCG-C-----------------------------------------------------------------------ACUUCUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUU****************************************************GC-UGC-GCAA-GCA-GCUAUGAC-AAUAA---------------------ACGAGCGUUGCAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal6
Sinor_melil GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-ACUUUUUGCU--CGGC--AUUGUACC----ACCGUUAUC-----------GGGCUA----AACUUAUAGUUGCAAACGACAACUAU---------------------------------------------------GCUGAAGCACGUCUCGCUGCCUAA--------------------CGGCGGU-GCGACACUUCAAAUC---------------------AAGU------------------------CCUUCCGGG-UAG-C-----------------------------------------------------------------------ACCGUAAGGCG--GGGUCC-------------------GAAGGC--ACCU------GGCAACAGAA--GCCUUCACCU****************************************************GC-CGUCUUCGGGCG-GCUAUGGC-AAUAA---------------------ACGGGCGAUGCAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Sinor_melil
Mesrhz_loti GGGGGCG-----AAAUAGG--AUCGACGAAGGUG------UAAAGAUCGUACUU-UUGCC--CGGC--AUUGUACC----ACCGUCAUC-----------GGGCUA----AACUUAUAGUUGCCAACGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCUUAA---------------------UGCAGU-GCGAUAGCUUCAAAUC--------------------AAGC------------------------CCUAGGGGU-UCG-C-----------------------------------------------------------------------ACUUCUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUU****************************************************GU-CGGCUUGA-CCG-ACUAUGGC-GAUAA---------------------AUGGGCGAUGAAA-----UAAGCCGUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Mesrhz_loti
Mesrhz_bnc1 GGGGGCG-----AAAUAGG--AUCGACGAGGGUG------UAAAGAUCGGACUU-UCGCU--CGGC--AUGGUACC----ACCGUUAUC-----------GGACCG---AACCUUAUAGUUGCCAACGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCUUAA---------------------UGCAGC-GCGAUAGCUUCAAUUC--------------------AAGU------------------------CUCAGGCCG-UCG-C-----------------------------------------------------------------------AGGCCUGAGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGUUUCGGCCG-ACUAUGGC-GAUAA---------------------ACGGACGAUGCAA-----UAAGCCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Mesrhz_bnc1
Uncul_whal5 GGGGGCG-----AAAUAGG--AUCGACGAGGGUG------UAAAGGAUC-UUCUUUUGCU--CGGU--AUGGCUCC----ACCGUUAUC-----------GGGCCA----UUAUGAUAGUUGCAAAUGACAACUAC---------------------------------------------------GCUGAGGCACGUCUAGCUNNNNNN--------------------NNNNNNN-NNNNNNNNNNN---------------------NNNNNNNN------------------------NNNNNNNN-NNNN-N-----------------------------------------------------------------------NNNNNNNNNNN--NNNNNN-------------------NNNNNN--NNNN------NNNNNNNNNN--NNNNNNNNNN****************************************************GU-CAG-GAAA-CUG-ACUAUGGC-GAUAA---------------------ACUGAUUUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal5
Uncul_whal4 GGGGCCG-----AAACAGG--AUCGACGGAUGGG------UAAAGGAGACUGCUUUUGCC--CGGG---UGAGG------CCCGAUACA-----------GGCUCA----UUCUUAAAGUUGCCAAUGACAACUUU------------------------------------------------GCUGAAGAAGUCCGUCUCGCUGCCUAG--------------------UCAGCGC-GUCUAACUUCGA--------------------CAUGAACU------------------------CCUGGGUGU-UCG-C-----------------------------------------------------------------------ACGCUCAGGCG--GGGUCC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CAG-CUUG-CUG-ACUAUGGC-GAUAA---------------------ACGCG-CUCGUAA-----UAACCAGACCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Uncul_whal4
Barto_hense GGGGGCG-----AAACAGG--AUCGACAAAAGUG------UAAAGAUUG-CUCUUUUACU--CGGU--AUAGUACC----ACCGUUAUC-----------GGACUA----AAUGAGUAGUUGCAAAUGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCCUGA--------------------GGUGGUG-UGAAUGCUUCAAACU---------------------AAGU------------------------CUUAAACCG-UCG-C-----------------------------------------------------------------------AGGUUUAAGCG--GGGUUC-------------------GAAGGC--ACCU------GGCAACAGAA--GCCUUCACUU****************************************************GC-UGG-CUUG-CCA-GCUAUGGU-AAUAA---------------------AUGGACAAUGAAA-----UAAGCUUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Barto_hense
Barto_quint GGGGGCG-----AAAUAGG--AUCGACAAGGGUG------UAAAGAUUG-CUCUUUUACU--CGGC--AUAGUACC----ACCGUCAUC-----------GGACUA----AAUGAGUAGUUGCAAAUGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCUUAA--------------------UGUAGUG-UGAAUGUUUCAAACU---------------------AAGC------------------------CUUAAAUCG-UCG-C-----------------------------------------------------------------------AGAUUUAAGCG--GGGUUC-------------------GAAGGC--ACCU------GGCAACAGAA--GCCUUCACUU****************************************************GC-UGG-CUUA-CCA-GCUAUGGU-AAUAA---------------------AUGGACAAUGAAA-----UAAACUCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Barto_quint
Bruce_abort GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU--CGGC--AUGAUACC----ACCGUUAUC-----------GGGUCA----ACAGAGUAGUUGCAAAUGACAACAAU------------------------------------------------GCUCAGGGUUAUGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAACCCACU-------------------CUAAAGU------------------------CCUUAGGG-UUAG-C-----------------------------------------------------------------------CCCUUAAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGCGCAAGCCG-ACUAUGGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Bruce_abort
Bruce_melit GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU--CGGC--AUGAUACC----ACCGUUAUC-----------GGGUCA----ACAGAGUAGUUGCAAAUGACAACAAU------------------------------------------------GCUCAGGGUUAUGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAACCCACU-------------------CUAAAGU------------------------CCUUAGGG-UUAG-C-----------------------------------------------------------------------CCCUUAAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGCGCAAGCCG-ACUAUGGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Bruce_melit
Brucel_suis GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU--CGGC--AUGAUACC----ACCGUUAUC-----------GGGUCA----ACAGAGUAGUUGCAAAUGACAACAAU------------------------------------------------GCUCAGGGUUAUGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAACCCACU-------------------CUAAAGU------------------------CCUUAGGG-UUAG-C-----------------------------------------------------------------------CCCUUAAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGCGCAAGCCG-ACUAUGGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Brucel_suis
Rhops_palu1 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC--CGGU--AUUGUUCC----GCCGUUAUC-----------GGGCUA----CUGCAAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAC--------------------UUUAAAGC------------------------CCUAACGGGUUAAGC-----------------------------------------------------------------------UCCGUUAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUC****************************************************GU-CGGGGCAACCCG-ACUAUGGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCc Rhops_palu1
Rhops_palu2 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-UGCUUUUUCC--CGGU--AUUGUUCC----GCCGUUAUC-----------GGGCUA-----UGCAAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAA-------------------GUCUGAAGU------------------------CCUGACGGGUUAAGC-----------------------------------------------------------------------UCCGUUUGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GUCGGG-GCAA-CCCGACUAUGGA-AAUAA---------------------AUGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCc Rhops_palu2
Rhops_palu3 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCG-AGCUUUUGUC--CGGA--AUGGUUCC----GCCGUGAUC-----------GGGCCA-----UGCAAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCAGCGUAA--------------------CGCUGCU-UGAAA-GACCAC--------------------AUGAAAGU------------------------CCUGGCGGGUUAAGC-----------------------------------------------------------------------GCCGCCAGGCG--GGGUUC-------------------GGAGGC--GCCU------GGCAACAGAA--GCCUCCACUG****************************************************GCCAG--UGCG--CUGGCUAUGAC-AAUAA---------------------ACCGCCGUCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Rhops_palu3
Rhops_palu4 GGGGGCG-----AAACAGG--AUCGAUGGCCGCGA-----AGAAGUGUU-GAAUUGUUCC--CGGC--AUGAUACC----GCCGUUAUC-----------GGGUCA-----AAACCUAAAUGCAAACGAUAACGUU---------------------------------------------CGCAUGAACGAAGUGCGCCUCGCGGCGUAA--------------------------------CCGUUCG--------------------------------------------------------------------------------------------------------------------------------------------------------GGGUA----------------------GGUCC-ACCU------AGCAACAGAACGG-CC--AUGG****************************************************GUC----GCAA----GACGAUGGC-GCUGA---------------------AACUCAACGCGG-------ACUGCGGGCAGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCc Rhops_palu4
Rhops_palu5 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCU-UGCUUUUUCU--CGGU--AUUGUUCC----GCCGUUAUC-----------GGGCUA----AUGCAAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCGGUU-UGAAA-GACCAAG-------------------UCUAAAGU------------------------CCUAACGGGUUAAGC-----------------------------------------------------------------------UCCGUUAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGGGCAACCCG-ACUAUGGA-AAUAA---------------------AUGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Rhops_palu5
Brdrz_japon GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCG-UGCUUUUUCC--CGGU--AUUGUUCC----GCCGUUAUC-----------GGGCUA----CUGCAAUAGUUGCCAACGACAACUUU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAU--------------------CUUAAAGU------------------------CCUAACGGGUUAAGC-----------------------------------------------------------------------UCCGUUAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GC-CGG-UUCG-CCG-GCUAUGGA-AAUAA---------------------ACGGUCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Brdrz_japon
Nitbr_hambu GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCU--CGGU--AUGGUUCC----GCCGUUAUC-----------GGGCUA-----UGCAAUAGUUGCAAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAU--------------------UCUGAAGU------------------------CCUGACGGGUUAAGC-----------------------------------------------------------------------UCCGUCAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUC****************************************************GC-CGG-UUCG-CCG-GCUAUGGA-AAUAA---------------------ACGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_hambu
Nitbr_winog GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC--CGGU--AUGGUUCC----GCCGUUAUC-----------GGGCUA-----UGCAAUAGUUGCAAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAC--------------------UCUGAAGC------------------------CCUGACGGGUUAAGC-----------------------------------------------------------------------UCCGUCAGGCG--GGGUCC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GC-CGG-UUCG-CCG-GCUAUGGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_winog
Nitbr_Nb311 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC--CGGU--AUGGUUCC----GCCGUUAUC-----------GGGCUA-----UGCAAUAGUUGCAAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAC--------------------UCUGAAGU------------------------CCUGAUGGGUUAAGC-----------------------------------------------------------------------UCCGUCAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUC****************************************************GC-CGG-UUCG-CCG-GCUAUGGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_Nb311
Uncul_farm1 GGGGCCG-----AAACAGG--AUCGACGAGGGCG------UAAAAGGCG-CGCUUUUGCC--CGUU--AUGGUUCC----GUCGUUAUC-----------GGACCA-----AAUCAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCCGCGUAG----------------------CGGCU-UGAAA-GACCG---------------------AUUNCAGU------------------------CCUAGCGGGUUAAGC-----------------------------------------------------------------------UCCGAUAGGCG--GGGUCC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUA****************************************************GCCGGC-GCAA-GCCGGAUAUGGC-GAUAA---------------------ACGGCCGUCGUAA-----UAAACCUUUCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCc Uncul_farm1
Mebrm_extor GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGUG-AACUUUCGCU--CGGC--AUGGUUCC----GCCGUUAUC-----------GGGCCU----UUGCAAUAGUUGCCAACGACAACUUU---------------------------------------------------GCUCCGGUGGCUGUCGCCGCGUAA---------------------GCGGUG-CCAAAAACCGAC---------------------CUAAAGU------------------------CCUAGCGG-GUAG-C----------------------------------------------------------------------ACCGCAUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUC****************************************************GCCGGUCGCAAGGCCGGCUAUGGC-GAUAA---------------------ACGUUCUUCGAAA-----UAAACCUAUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCc Mebrm_extor
Rhodospirillales
Magsp_magn1 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGGG-AGCUUUCGCU--CGGC--AUGGUUCC----GCCGUUAUC-----------GGGCCU----UUGCAAUAGUUGCCAACGACAACUUU---------------------------------------------------GCUCCGGUGGCUGUCGCCGCGUAA---------------------GCGGUG-CCAAAAACCGAC---------------------CUAAAGU------------------------CCUAGCGG-GUAG-C----------------------------------------------------------------------ACCGCAUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUC****************************************************GCCGGUCGCAAGGCCGGCUAUGGC-GAUAA---------------------ACGUUCUUCGCAA-----UAAACCUAUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Magsp_magn1
Magsp_magn2 GGGGGCG-----AAAUAGG--AUCGACGUGCGCAG-----UAAAGGUCU-GGUUUGCGUU--CGGC--AUGAUACC----ACCGUUAUC-----------GGGUCA---AUCCUAACAAGUGCCAACGACAACGUU------------------------------------------------------GAACUUGCCGCUGCGGCUUAG-----------------------------UCCGUAAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------CGGUCC-------------------GGGGGGA-ACCG------GGCAACAGAACUCCCCCCACUU****************************************************G-CCGG-GCAA-CCGG-CUAUGAC-GCUAA---------------------ACGCCACACGGAA-----UAGACGUUACGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Magsp_magn2
Alprot_SAR1 GGGGGUG-----AUAUAGG--AUCGACGAAUGCU------UAAAGGUAA-GUUUUUCUCU--CGGU--AUUGUACC----ACCGUUAUC-----------GGGCUA-----UUUUAUAAAUGCUAACGAUGAAUUA------------------------------------------------------------GCGCUCGCUGCUUAA-----------------------UCUAAUUAGGUAAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGGAGAC-ACCG------GGCAACAGAA-GUCUCCCACUU****************************************************GCUGGGGAUAU-CCCAGCUAUAGG-GAUAA---------------------ACGGCUUGCGUAA-----UACCCAUUACGGAC-CCGGGGGCGGUACCCGG-CACCUCCACCA Alprot_SAR1
Uncul_whal3 GGGGGCG-----AAAUAGG--AUCGACGCGUGUAA-----UAAAGGCUU-GGUUUGUGCU--CGGC--AUGGUACC----GCCGAUAUC-----------GGGCCAU----UUUGAUAAGUGCCAAUGAUAACACA---------------------------------------------------GAAGCACUUGCUGUCGCGGCCUAA----------------------------CACGCCAUAACGACAA-------------------------------------------------------------------------------------------------------------------------------------------------CGGGGUUC-------------------GGGCGGC-ACCU------GGCAACAGAA-GCCGCCCACUU****************************************************GC-CGG-CUUG-CCG-GCUACGGU-GCUAA---------------------ACGCCAAGCGGAA-----UAAGCACAGCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal3
Rhspi_rubru GGGGGCG-----AAAUAGG--AUCGACACGCGUGG-----UAAAGAUAA-AGGUUGUGUU--CGGC--AUGGUAUCC---ACCGUUAUC-----------GGGCCA---ACUCUGACAAGUGCCAACGACAACGUU------------------------------------------------------GAACUUGCCGCUGCGGCCUAA---------------------------ACACCCGUAAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGGGGGGCACCG------GGCAACAGAAGCCCCCCCACUU****************************************************GC-CGGCUUGU-CCG-GCUAUGAC-GCUAA---------------------ACCCUUUAUGGAA-----UAAGCGUUGUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Rhspi_rubru
Gluco_oxyda GGGGACG-----AAACAGG--CUCGACACGCAUGG-----UAAAGACUU-AUCUUUUGCC--CGGC--AUUGUACC----ACCGUCAUC-----------GGGCUA----AACUUACAAGUGCCAACGAUAACUCA---------------------------------------------------GAGGUGCUCGCUGUCGCUGCAUAA------------------------------GCGAUAAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGGAGGGCACCG------GGCAACAGAAGCCCUCCCACCU**************************************************GCAAGGGGUUCGUCCCCGGCUAUGGC-GAUAA---------------------ACGGUAAGUGAAA-----UAAGUGUUGUGGAC-CCGGGGGCAGUGCCCGG-CGUCUCCACCA Gluco_oxyda
Sphingomonadales
Nsphg_aroma GGGGCCG-----AACUAGG--AUCGACGUGUGUUG-----AAAAGCGUU-GUU-UUCACC--CGGG--CUGAGUAA----CCCGUUCAA-----------GGCUCA---AAACUCACAAGUGCCAACGACAACGAA------------------------------------------------------GCACUUGCUCUCGCGGCGUAA-----------UUCUAGGGGCUAACGCCCUGAAGUUACUAAGUUAGAGCA---------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGACCGA-ACCG------GGUAACAGAA-UCGGAAACCGG****************************************************GC-CGGUUCAGGCCG-GCUAUGGU-GAUAA---------------------ACUGCGGCGUGCA----AUAGGCACAGCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Nsphg_aroma
Sphpx_alask GGGGCCG-----AACCAGG--AUCGACGUGUGUUC-----AAAGACGAU-GCU-UUCUUC--CGGG--CUGAGUAA----CCCGUUAAA-----------GGCUCA---AAACCAAUAAGUGCUAACGAUAACGAA------------------------------------------------------GCACUCGCUCUUGCUGCCUGA-----------CCGAUAAGCCUCACGGCCUAAGGUUAGACAAAUAGAACG---------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGACCGA-ACCG------GGCAACAGAA-UCGGAAACCAG****************************************************GU-CGGCUUCGGCCG-ACUAUGAG-GAUAA---------------------AUGGUGUCGUGGA----AUAGACACAGCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Sphpx_alask
Eryba_litor GGGGCCG-----AACCAGG--AUCGACGUGUGUUG-----AAAGGCAUU-GUU-UUCACC--CGGG--CUGAGUAU----CCCGCAAAA----------CUGUUCA---AAACACACAAGUGCCAACGAUAACGAA------------------------------------------------------GCACUCGCUCUCGCAGCGUAA-----------CAUGACGGCCUAACGGCCUAACGUUACAAAGCUAAAGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGACC-C-ACCG------GGCAACAGAAGCGGAUUCCGGG****************************************************GU-CCGUUUCGGCGG-GCUAUGGU-GAUAA---------------------ACUGCGGUGUGUA----AUAGACGCAACGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Eryba_litor
Uncul_farm4 GGGGGCG-----AAAUAGG--AUCGACGAGUGCAG-----UAAAGGCCU-GGUUGCCGAU--CGGU--AUGAGACC----ACCGUGAC------------GGCUCAU-----CACACAAGUGCCAACGAUAACGAG------------------------------------------------------GCGCUCGCUCUUGCUGCGUAA------------CUGAGGUCCUAACGGAUUGAAGUUACAAGGCUAAAGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGACCCC-ACCG------GGCAACAGAAGGGGAUUCCAGC****************************************************GCCGGG-GCAA-CCCGGCUAUGUC-GGUAG---------------------AAUGUCGGGUGGA----AUAAGCAUUUCGGACCCGGGGGGCAGUACCCCGGCGCCUCCACCA Uncul_farm4
Uncul_farm5 GGGGGCG-----AAAUAGG--AUCGACGAGUGCAA-----UAAAGACGC-GGUUGCCGAU--CGGU--AUGGAUGCC---ACCGUGAC------------GGCUCA----AUCACACAAGUGCCAACGAUAACGAG------------------------------------------------------GCGCUCGCUAUUGCUGCGUAA------------CUGACGGCCUGACGGUCUGACGUUACAAAGCUAAAGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGACCCC-ACCG------GGCAACAGAAGGGGAUUCCAGC****************************************************GCCGGG-GCAA-CUCGGCUAUGUC-GGUAG---------------------ACUGUCGCGUGGA----AUAAACACUUCGGACCCGGGGGGCAGUACCCCGGCGCCUCCACCA Uncul_farm5
Zymom_mobil GGGGGCG-----AAACAGG--AUCGACGUGUGUAG-----UAAAGACUU-GAUUGCCAUC--CGGC--GUGAUUGA----GCCGUUAAA----------CCGAUCA----UUUUUAUAAGUGCCAACGAUAACGAG------------------------------------------------------GUACUCGCUGUUGCUGCGUAA------------UGGAAACCUUCACGGGUAGACAUUACUAAGUAAGAGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGGCUGC-ACCG------GGCAACAGAAGCAGAUUCCAGC****************************************************GUCAC--UUCG--GUGACUACGAU-GGUAG---------------------ACUGUUAAGUGAA----AUAGACUCGACGGACCCGGAGGGCAGUACUCCGGCGCCUCCACCA Zymom_mobil
Sphin_elode GGGGCCG-----AACCAGG--AUCGACGUGUAUUG-----AAAAGCGCU-GUC-UUCGCU--CGGA--AUGGGACC----ACCGCAAC------------GGCCCA-----UUACACAAGUGCCAACGAUAACGAA------------------------------------------------------GCACUCGCUAUUGCGGCGUAA------------CCUCACGGCUUAACGGCCUAAGGUUAUUCUAAAAUGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGGCCAC-ACCG------GGCAACAGAAGUGGACUCCAGC****************************************************GCCGGG-UUCG-CCCGGCUAUGGC-GAUAA---------------------ACAAUGGCGUAUA----AUAGAUGCAGCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Sphin_elode
Rickettsiales
Ehrli_chaff GGGGAUG-----AAACAGG--AUCGACAUGCAUAG-----UAAAGGGGAUAGUUUUUGCU--CGG----UGAGAAAACA-GCCGUUUAA----------AUGCUCA---AAAUUUAUAAGUGCAAACGAUAAUUUC---------------------------GUUUUUGCUAAUGAUAAUAAUAGCAGUGCUAACUUAGUAGCUGCUUAG------------------------------UUUUAUUAUUAGCG---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUUUUU--------------AAGGGUUUU-CCG------GGCAACAGAAAAACCCUUUUUU****************************************************GUGCU--UUU---AGCACUAUGGC-AAUAA---------------------AGGCAUCUUAAAA-----UAGAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACuu Ehrli_chaff
Ehrli_rumi1 GGGGAUG-----AAACAGG--CUCGACAUGCAUAG-----UAAAGGGGAUAGCUUUUGCU--CGG----UGAGAAAACA-GCCGUUUCA---------AGUGAUCA---AAACUUAUAAGUGCAAACGAUAAUUUC---------------------------GUUUCUGCUAAUGAUAAUAAUAGCACUGCUAACUUAGUAGCUGCUUAG------------------------------UUUUAAAAUUAGCA---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUUUU----------------GGGGUUUU-CCG------GGUAACAGAAAAACCCC-UCAC****************************************************GUGCU--UUU----GCACUAUGGC-AAUAA---------------------AUGCAUCUUAGAA-----UAAAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Ehrli_rumi1
Ehrli_rumi2 GGGGAUG-----AAACAGG--CUCGACAUGCAUAG-----UAAAGGGGAUAGCUUUUGCU--CGG----UGAGAAAACA-GCCGUUUCA---------AGUGAUCA---AAACUUAUAAGUGCAAACGAUAAUUUC---------------------------GUUUCCGCUAAUGAUAAUAAUAGCACUGCUAACUUAGUAGCUGCUUAG------------------------------UUUUAUAAUUAGCA---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUUUU----------------GGGGUUUU-CCG------GGUAACAGAAAAACCCC-UCCC****************************************************GUGCU--UUU----GCACUAUGGC-AAUAA---------------------AUGCAUCUUAGAA-----UAAAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Ehrli_rumi2
Ehrli_canis GGGGGUG-----AAACAGG--AUCGACAUGCAUAG-----UAAAGGGGAUAGUUUUUGCC--CGG----UGAGAAAGCA-GCCGUUUAA----------AUGCUCA---AAAUUUAUAAGUGCAAACGAUAAUUUC------------------------GUUUUUGCAAAUGACAAUAAUAGCAGUGUUGCUGGCUUAGUGGCUGCUUAG------------------------------UUUUGUCAUUAGCG---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUUUUA--------------GAGGGUUUC-CCG------GGCAACAGAAAAAUCCUCUUUU****************************************************GUGUU--UUA---AGCACUAUGGC-AAUAA---------------------AGGCAUCUUAAAA-----UAGAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACuu Ehrli_canis
Anapl_phago GGGGAUG-----AGACAGG--UUAGACAGGCGUAG-----UAAAGAAGCUGGCUGUUGCU--CGGU--GGGAAUUCCA--GCCGUAUAA----------UUGGGUC---AUAUUUAUAAGUGCAAACGAUGAUUUC---------------------------GUUGCCGCUAAUGACAACGUGGAAACAGCUUUCGUAGCUGCAGCCUAG------------------------------UGUGCCU-UUAGCG---------------------------------------------------------------------------------------------------------------------------------------------------CGGUCUC------------------GGAGGCUUACCG------GGCAACAGAAAAGCCUCCAUUU****************************************************GUGA---UCUU---UCACUAUGGC-AAUAA---------------------AAGUUACUUGGAA-----UAGACGUUUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACgu Anapl_phago
Anapl_margi GGGGAUG-----AAACAGG--AUAGACAGACGCAA-----UAAAGAGGACGGCGUUUGCU--CGGU--GGGAAUUCCA--GCCGUAUAA----------GUGGGUC---AUUUUUAUAAGUGCAAACGAUGAUUUC---------------------------GUUGCCGCUAAUGAUAACAUGGAAACAGCUUUCGUAGCUGCUGCCUAG-----------------------------UUUUUGUCUUUAGCG---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUU------------------GGGGGCUUACCG------GGCAACAGAAAAGCCCCCGCCA****************************************************GUG----GUUU----CACUAUGGC-AAUAA---------------------AGGCCUCUUGGAA-----UAGGCGUUUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Anapl_margi
Neori_senne GGGGGUG-----AUUUAGU--UUCGACAGGUAU-------UAAAGGCUA-AACUUUUGUU--CGGU--UGAGUGAU----CCCGUGAU----------UCACAACA---CUUUUUAUAAGUGCAAACGACAAUUUU---------------------------------------GAAGCUGGUUCUGCUGAAUAUGCAGUAGCUGCCUAG------------------------------UUUAUAGGUAGUACAGCG-----------------------------------------------------------------------------------------------------------------------------------------------CGGUUU--------------------GGGGCG-GCCG------GUCAACAGAAC-UGCCCCAGUU****************************************************GCGC--UGUUUU--GCGCUAUGAC-AAUAA--------------------AUGGUUUUUCGUAA-----UAGGUAUCUUGGAC-CCGAAGGCGGAGUUCGG-CACCUCCACCg Neori_senne
Wolbachia_1 GGGGACG-----AAUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU--CGGU--UAGACACC----ACCGCUAAG-----------AGUUCA-----UAAUUUAAAUGCAAACGAUAAUUUU---------------------------------------GCUGCUGAAGACAAUGUCGACGCAAUAGCUGCUUAA--------------------UUUAAGCACUAUAACUUCAUUGCUAUAAGCA--------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------AGGGAAC-GCCG------GGUAACAGAA-GUUCCCCAAAA****************************************************GUACAU-UUU--GUGUACUAUAGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGUCUCCACCA Wolbachia_1
Wolbachia_2 GGGGGCG-----AAUAAGA--AUCGACAUGCAUAG-----UAAAGAUGG-UAACUUUGCU--CGGU--UAGAUACC----ACCGCUAAG-----------AGUUCA-----UAGUUUAAACGCAAACGAUAAUUUU---------------------------------------GCUGCUGAAGGUGAUGUU---GCGGUAGCUGCUUAA--------------------UUUAAGCACUAUAACUUCAUUACUAUAAGCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCUU-------------------AGGGAAC-GCCG------GGUAACAGAA-GUUCCCCCCAG****************************************************GUGUAU-UUU--AUACACUAUGGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_2
Wolbachia_3 GGGGGCG-----AGUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU--CGGU--UAGAUACC----ACCGCUAAG-----------AGUUCA-----CAAUUUAGAUGCAAACGAUAACUUU---------------------------------------GCUGCUGAAGACAAUGUU---GCAUUAGCUGCUUAA--------------------UUUAGGCACUAUAACUUCAUCGCUAUAAGCA--------------------------------------------------------------------------------------------------------------------------------------------CGGUUU-------------------AGGGAAC-GCCG------GGUAACAGAA-GUUCCCCCAAA****************************************************GUGUAUUUUUU-AUACACUAUGGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_3
Wolbachia_4 GGGGGCG-----AUUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU--CGGU--UAGACACC----ACCGCUAAG-----------AGUUCA-----UAAUUUAAAUGCAAACGAUAAUUUU---------------------------------------GCUGCUGAAGAAUAU------CGUGUUGCUGCUUAA--------------------UUUA-GCACAACCGGUUUAUUACUA-AAGCA--------------------------------------------------------------------------------------------------------------------------------------------CGGUUU-------------------AGGGAAC-GCCG------GGUAACAGAA-GUUCCCCCAAA****************************************************GUACAU-UUU--GUGUACUAUAGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_4
Ricke_prowa GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAAGU-UGCUUUUACU--CGGU--AUGAUUCC----ACCGGUGGUUUUUGCCAUAUGGAUCA---AAACAAAGAAACGCAAACGAUAAUCGU------------------------------------------UAUGUAGGUGUUCCAGCUUUAGCUGCAGCUUAA------------------------------GCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GGGAUUU-GCCG------GGCAACAGAAAAA-UCCCAUAC****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_prowa
Ricke_typhi GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAAAU-UGCUUUUACU--CGGU--AUGAUCCC----ACCGAUGGCUUUUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAG---------------------------------------CGUUAUGUAGGUGUUGCCGCUUUAGCUGCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUU-------------------GGGAUUU-GCCG------GGCAACAGAAAAA-UCCCAUGC****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_typhi
Ricke_akari GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUUUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU---------------------------------------CGUUCUGUAGAU---UUAGCUCUA---GCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GGGGUUU-GCCG------GGCAACAGAAAAA-CCCCACAC****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_akari
Ricke_felis GGGGGCG-----AAAUAGG--AUCGACGUACCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUU-GCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU---------------------------------------CGUUAUGUAGGU---GCAGCUUUA---GCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GGGGUUU-GCCG------GGCAACAGAAAAA-CCCCACAU****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_felis
Ricke_ricke GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUGUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU---------------------------------------CGUUCUGUAGGUCGUUUAGCUUUA---GCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG------------------GAGGGUGU-GCCG------GGCAACAGAAAAACCCUCACUU****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_ricke
Ricke_cono1 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUGUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU------------------------------------------CGUUCUGUAGGUCAUUUAGCUUUAGCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GAGGGUGUGCCG------GGCAACAGAACAACCCUCACUU****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_cono1
Ricke_cono2 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--NNNN--NNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------NNNNNNN----------------------------------------------------------------------------------------------------------------------------------------------------------NNNNNN-------------------NNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNN****************************************************NN-NN--NNN---NN-NNNNNNNN-NNNNN---------------------NNNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNCCA Ricke_cono2
Ricke_cono3 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGUU-UGCUUUUACU--NNNN--NNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------NNNNNNN----------------------------------------------------------------------------------------------------------------------------------------------------------NNNNNN-------------------NNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNN****************************************************NN-NN--NNN---NN-NNNNNNNN-NNNNN---------------------NNNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNCCA Ricke_cono3
Ricke_sibir GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUGUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU------------------------------------------CGUUCUGUAGGUCAUUUAGCUUUAGCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GAGGGUGUGCCG------GGCAACAGAACAACCCUCACUU****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_sibir
BETA-PROTEOBACTERIA
unclassified Betaproteobacteria
Tremb_prin1 GGGGAUG-----ACAGGGA--UUCGACACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAAC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCAAGUAAUAGG------------------UUCACCAUUGUGGCUAACGAUUGCAUCGACGCGUUAGUCAGAAGAGCAGUGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGGU-ACACUGAGGGACUAGGCUGACGG-UCAUAGUGCGACUGUAAACAAAGCA-UGUUG----------------------UGCACCCCACA------CCUCCCUGCUGGAC-GUGGGUUCAAUUCCCAC-CAUCUCCAggc Tremb_prin1
Tremb_prin2 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAGC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCGAGUAAUAGG------------------UUCACCAUGGUGGCUAACGAUAGAACUUUCGCGUUGGUCGGAAGAGCAGCGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGGUUAUACUGAUGGACUAGGCUGACGG-UCAUAGUGCGACUGUAAACAAAGCA-UGUGG---------------------UCGCACCCCACA-----CCCUCCCUGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin2
Tremb_prin3 NNNNNNN-----NNNNNNN--NNNNNNACGGGGU-------AAGGGUUGGGGUGCCAUGC--CGAGC--CGCCCUAC--GUAAA-----------------GGGCA-------CGAACGGUGCACCACGCAAUAGG------------------UUCACCAUGGUGGCUAACGAUAGCAUGUUCGCGUUGGCUGGAAGAGCAGCGGUGUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUGACGAC-CCACUGAUGGAAUAGGCGGCCGA-GCACAUGGCGAUAGUAAACGAAGCA-UGUCG----------------------AGCAGUCCACC------CAACCCCGAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin3
Tremb_prin4 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAGC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCAACGAGUAACAGG------------------UUCGCCAUGGUGGCUAAUGAUUGCCAGUUCGCGUUAGUCGGAAGAGCAGCGGUGUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGGU-AUACUGAUGGACUAGGCUGACGG-UCAUAGUGCGACUGUAAACAAAGCA-UGUUG----------------------UGCACCCCCCA----CACCUCCCUGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin4
Tremb_prin5 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAGC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCAAGAAAUAGG------------------UUCACCAGGGUGACUAACGACAGCAAGUUCGCGUUGGUCGGAAGAGCAGCGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGAU-ACACUGAAGGACUAGGCUGACGGGUCAUAGUGCGACUGUAAACAAAGCA-UGUUG----------------------UGCACCCCACA------CCUCUCCGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin5
Tremb_prin6 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAGC--AGCCCUAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCAAGUAAAAGG------------------UUCACCAUGGUGACUAACGACAGCAAGUUCGCGUUGGUCGGAAGAGCAGCGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCUAAGAU-ACACUGAAGGACUAGGCUGACGGGUCAUAGUGCGACGGUAAACAAAGCA-UGUUG----------------------UGCACCCCAUC------CCUCUCCGCUGGAA-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin6
Neisseriales
Neiss_gono1 NNNNNNN----NNNNNNNN--NNNNNNGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCAGCCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Neiss_gono1
Neiss_gono2 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGU----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCAGCCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_gono2
Neiss_lacta GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCAGCCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUCCCU-AAAGGCCUGUCGGUCGGCAUGA-CGGGGAU---AAGAU-UCCAAAUA--GAUACGACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_lacta
Neiss_meni1 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCUGCCGG-------------GUUAUUUGGCAGGAAAU----GAGAUUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni1
Neiss_meni2 GGGGGCG----ACCUUGGU--UUCGACGAGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCUACCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni2
Neiss_meni3 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCUACCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni3
Chrbm_viol1 NNNNNNN----NNNNNNNN--NNNNNCGGGGGUUGC-----GAAGCAGAUGAGGGCAUAC--CGGGA-UUUCAGUCA--CCCCGUAAAAC----------GCUGAA---UUUAU-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUGGCAGCCUAA---------------------CGGCCGGCCAGA---------------------------CACUACAACGGUUC-------------------GCAGAUGGGCCGG----GGGCG----------UCAA-------------------------------AACCCUGUAGUGUCACUCUACAUCUGCUA--GUGCUGUUCCGG-------------GUUACUUGGUUCAGUGC----GAAAUAAUAGGUAAC-UC------GCCAAAG-UCCAGCCUGUCCGUCGGCGUGG-CAGAGGU---UAAAU--CCAAAU---GACACGACUAAGUA-UGUAG----------------------AACUCACUGUAG------AGGACUUUCGGAC-GCGGGUUCAACUCCCNN-NNNNNNNNNNN Chrbm_viol1
Chrbm_viol2 GGGGGCG----ACC-UGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGAGGGCAUAC--CGGGA-UUUCAGUCA--CCCCGUAAAAC----------GCUGAA---UUUAU-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUGGCAGCCUAA---------------------CGGCCGGCCAGA---------------------------CACUACAACGGUUC-------------------GCAGAUGGGCCGG----GGGCG----------UCAA-------------------------------AACCCUGUAGUGUCACUCUACAUCUGCUA--GUGCUGUUCCGG-------------GUUACUUGGUUCAGUGC----GAAAUAAUAGGUAAC-UC------GCCAAAG-UCCAGCCUGUCCGUCGGCGUGG-CGGAGGU---UAAAU--CCAAAU---GACACGACUAAGUA-UGUAG----------------------AACUCACUGUAG------AGGACUUUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Chrbm_viol2
Nitrosomonadales
Uncultu_U02 NNNNNNN-----NNNNNNN--NNNNNNGUGGAUUGC-----AAAGCUAUCGAGGGCGUGU--CGAGG--AUCAGUUA--CCUCGUAAAUCCA--------UCUGAA---AAACA-GUAAACGCAAACGACGAACAG---------------------------------------------------------UUUGCUCUAGCAGCUUAA---------------------UCGCUCGCUAGA---------------------------UCUCACACCAGCUU-------------------GCCGAUGGGCUGG----GCAGGG---------UCAA------------------------------ACCUGCAGUGGGAUCAUCGCACAUCGGAUC--GCUGCGUGCAGG-------------GUUGCGAUGCAAGUGGC----UAAAUCAA--GCGAC-UC------GCGGUUGUCGUAGGGUGUCCCCUCCCGACAAUGAUCGU---UAAAA--CCAAAUAA-GAC--GACUACACA-CGUAG----------------------AACUUGUAGUGG------AGGAUUUGCGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_U02
Nisom_europ GGGGGCG----AUC-CGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--UUCAGUAC--CCUCGUAAAACA---------GCUGAA---AAAAA-AUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCCGCUUAA-----------------------UCCGGCUAAA---------------------------CUCCACACCGGUGG-------------------GCCUCAACGCCGG----GUCUG----------GCAA-------------------------------CAGACAGUGGAGUCAU-UAAC-GAGGAUC--GCGUUUUGCAGG-------------GUUACUUUGCAGAGCGC----UAAAAAAUAGGUAAC-UC------GCCUGUC-AUCAGCCUGCCGGUUGGCGGAU-GCCAGGU---CAAAU---UAAAU---AACAUGGCUAAGUA-UGUAG----------------------AACUGUCUGUAG------AGGACUUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Nisom_europ
Nisom_cryot NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--ACCAGAAUA-CCUCGUAAAUACA--------UCUGGA---AAAAA-AUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCCGCUUAA-----------------------UACGGCUAGC---------------------------CUCUGCACCGAUGG-------------------GCCUUAACGUCGG----GUCUG----------GCAA-------------------------------CAGACAGCAGAGUCAU-UAGC-AAGGAUC--GCGUUCUGUAGG-------------GUCACUUUACAGAACGU----UAAACAAUAGGUGAC-UC------GCCUGCC-AUCAGCCCGCCAGCUGGCGGUU-GUCAGGU---UAAAU---UAAAG---AGCAUGGCUAAGUA-UGUAG----------------------AACUGUCUGUAG------AGGACUUGCGGAC-GCGGGUUCAACUCCCNN-NNNNNNNNNNN Nisom_cryot
Nissp_multf GGGGGCG-----ACUUGGC--UUCGACGUGGGUUGC-----AAAACAGAGCAGGGCAUAC--CGAGG--ACCAGUUA--CCUCGUAAAUACA--------UCUGGA----AACCAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------AUCCGGCUGGA---------------------------CUCCGCACCGGUGG-------------------GCCUCAACGCCGG----GUCUG----------GCAA-------------------------------CAGACAGCGGAGCCAU-UAAC-GAGGAUC--GCGCCCGGUAGG-------------GUUACUUUACAGGGCGU----UAAACAAUAGGUGAC-UC------GCCUGCC-AUCAGUCCGCCGGUUGACGGAU-GCCAGGU---UAAAU---UAAAA---AACAUGGCUAAGUA-UGUAG----------------------AACUGCCUGUAG------AGGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Nissp_multf
Uncultu_U04 NNNNNNN----NNNNNNNN--NNNNNNGUGGGUUGC-----AAAGCAGUGCAGGGCAUAC--CGAGG--ACUAGUCA--CCUCGUAAAUCC---------ACUGGA--ACAAGUUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------UCCCGGCUGGA---------------------------CGCUGCACCGGAGG-------------------GCCUCUCGGCCGG----GCGGA----------GCAA-------------------------------UCCGCAGCAGCGUCAU-AUAGAGAGGAUC--GUNNNNNNNNNN-------------NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NN------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNN---NNNNN--NNNNNN---NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_U04
Methylophilales
Mebcl_glyco NNNNNNN----NNNNNNNN--NNNNNCGGGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--CCUAGUCA--CCUCGUAAAUAA---------ACUAGA---ACAAGUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------UCCCGGCUGGA---------------------------CGCUGCACCGAAGG-------------------GCCUCUCGGUCGG----GUGGG----------GUAA-------------------------------CCCACAGCAGCGUCAU-UAAGAGAGGAUC--GUGCGAUAUUGG-------------GUUACUUAAUAUCGUAU----UAAAUCCAAGGUAAC-UC------GCCUGCU-GUUUGCUUGCUCGUUGGUGAGC-AUCAGGU---UAAAU---CAAAC---AACACAGCUAAGUA-UGUAG----------------------AACUGUCUGUGG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCNN-NNNNNNNNNNN Mebcl_glyco
Mebcl_flage GGGGCCG----ACC-AGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--CCUAGUCA--CCUCGUAAAUAA---------ACUAGA---ACAAGUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------UCCCGGCUGGA---------------------------CGCUGCACCGGAAG-------------------GCCUCUCGGCCGG----GCGG-----------GUAA--------------------------------CCGCAGCAGCGUCAU-UUAGAGAGGAUC--GUGUUGUAUUGG-------------GUUACUUAAUACAACAU----UAAAUCCAAGGUAAC-UC------GCCUGCU-GUUCGCUUGCUCGUUGGUGGGC-AUCAGGU---UAAAU---CAAAC---AACACAGCUAAGUA-UGUAG----------------------AACUGUCUGUGG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Mebcl_flage
Uncul_farm7 GGGGGUG----ACCCCGGU--UUCGACGUGGGUUAC----AAAGCAGUGCAGGGGCAUAC--CGAGG--ACCAGUCA--CCUCGUAAAACA---------ACUGGA---AAAAGUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------UACCGGCUGGA---------------------------CGCUGCACCGAAGG-------------------GCCU-UCGGUCGG----GCAGG----------GCAA-------------------------------CCUGCAGCAGCGUCAU-AAAGAGAGGAUC--GUGCCGUACCGG-------------GUUACUUGAUACAGCAU----UAAAUCCAAGGUAAC-UC------GCCUUGC-CUCAGCCUGCCGGUUGACGGUU-GCAAGGU---CAAAU---CAAAU---AACCAGGCUAAGUA-UGUAG----------------------AACUGUCUGUAG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CACCUCCACCA Uncul_farm7
Uncul_poln1 GGGGACG----ACC-UGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--GCGGGCUA--CCUCGUAAAUACA--------ACCUGA---AAAAACUUAACUGCAAACGAUAACUCG---------------------------------------------------------UACGCACUGGCAGCUUAA-----------------------UUGCUGUUAG---------------------------CUCUAGAACACCUC-------------------GUCCCUGGGGUGG----GCCG-----------UUAA--------------------------------NNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NN------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNN---NNNNN---NNNNN---NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_poln1
Rhodocyclales
Azoarc_BH72 GGGGCCG----ACC-UGGC--UUCGACGUGGGUCGC-----GAAGCAGUGCAGUGCAUAC--CGAGG--ACCAGUCA--CCUCGUAAAUCCA--------UCUGGG---AAACU-ACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA----------------------UCCCGGCGGG----------------------------CGCUGCACCGGCAG-------------------GUCUCUGGGCCGG----GUGGUUCCAGC----GUAA----GCU----------------------GGGCCGCUGCAGUGUCAU-UUACAGAGAAUC--GCGAGCAGGGCCGG-----------GUUACUUGGCUCUGUAGC---UAAAGGUAAGGUAAC-UC------GCUGAUG-ACCGGCCUGCCGACCGGCUAAGUCAGAGGC---UAAAU--CCAAAUA--GGU-CGGCUAAGUA-UGUAG----------------------AGCUGUCUGUAG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Azoarc_BH72
Azoarc_EbN1 GGGGGUG----CAC-CGGU--UUCGACAGGGCGGGC------AAUGGUGAGCAGGCAACC--CGAG---AGGCGACG---GACGUAAUC-----------CGCGCA---AAUCC-ACAAACGCCAACGAUGAGCGU---------------------------------------------------------UUCGCUGUAGCCGCUUAA------------------------GGCAACAGC---------------------------CGGGGCC--------------------------GCCUG-------------------------------------------------------------------AGCCCUGUUAC-CAAAGA-CGGC---UGGCGGGGGCUUCG------------------GCCCCCGCU-UCA*******************************************************************************************AUGGU-UGUAA--------------------UUCCGGCAACCCGG------AGACGUUCUGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACag Azoarc_EbN1
Decmo_aroma GGGGGUG----UAC-UGGU--CUCGACAGGGCGGAC------AAAGGUGCGCAGGCAACU--CGUC---AGGCGAUC---GACGUUAAU-----------GAAGCA---AAUCC-AUAAUUGCCAAUGAUGAGCAA---------------------------------------------------------UUCGCUAUUGCCGCCUAA----------------------AAACGGUUAGC---------------------------CGGGGCU--------------------------GCUAG-------------------------------------------------------------------AGCCUUGUUAC-CAAAGAUAGC----CGGCGGGGACUUCG------------------GUCCCCGUCGUCA*******************************************************************************************AUGGU-UGUAA--------------------UUCCGGCAAUCUGG------AGGCGUUCUGGAC-AGGGGUUCGAUUCCCCU-CACCUCCACCc Decmo_aroma
Decmo_agita GGGGGUG----UAC-UGGC--UUCGACAGGGCGGGC------AAAGGUGCGCAGGCAACC--CGAG---AGGUGACG---GACGUAAUC-----------CGCACA---AAUCC-AUAAUUGCCAAUGAUGAGCAA---------------------------------------------------------UUCGCUAUCGCCGCCUAA----------------------AAACGGCUAGC---------------------------UGGGGCC--------------------------GCUGA-------------------------------------------------------------------AGCCUUAUUAC-CCAAGACAGC----CGGCNNNNNNNNNN------------------NNNNNNNNNNNNN*******************************************************************************************NNNNN-NNNNN--------------------NNNNNNNNNNNNGG------AGGCGUUCUGGAC-AGGGGUUCGAUUCCCCU-CACCUCCACCc Decmo_agita
Azosp_oryza GGGGGUG----UAC-UGGC--UUCGACAGGGCGGGC------AAAGGUGCGCAGGCAACU--CGUC---AGGCGAUC---GACGUUAAU-----------GAAGCA---AAUCU-CCAAACGCCAACGAUGAGCGU---------------------------------------------------------UUCGCAAUCGCCGCUUAA------------------------GGCUUUUGC---------------------------CGAGGCU--------------------------GCUUG-------------------------------------------------------------------AGCCUUGUUAC-CAAAGAAAAGC---CGGUNNNNNNNNNN------------------NNNNNNNNNNNNN*******************************************************************************************NNNNN-NNNNN--------------------NNNNNNNNNNNNGG------AGGCGUUCUGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACCu Azosp_oryza
Hydrogenophilales
Thibl_denit GGGGCCG----ACC-UGGC--UUCGACGUGGGUCGC-----AAAGCAGCGUAGGGCAUAC--CGAGG-GUCAGAGCA--CCUCGUAAAUCC---------AACUGA---AAAACUUUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCCCUGGCCGCUUAA------------------------GGUCCAGG----------------------------ACUCACACUAGCCU-------------------GUUCAUGGGCUAG----GCCGGG---------UCAA------------------------------ACCGGCAGUGAGUUAAU-UCACAUGAAAUC--GCGCUUGUCCGG-------------GUCGCUUGGGCAGGUGC----UAAAUCCAAGGCGGC-UC------GGCGAAA-UCCAGCCUGUUCGGCGGGCGUGAUGGAGCU---UAAAGCUUAAAAA---CACCGGACUAAGUA-UGUAG----------------------AACUGCCUGUAG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Thibl_denit
Burkholderiales
Comam_testo GGGGCCG----AUUCUGGA--UUCGACGUGGGUUCG-----GGACCGGUGCGGUGCAUGU--CGAGC-UUGAGUGAC--GCUCGUAAAUCUC--------CAUUCA---AAAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA-----------------------UCCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUAGUGGGCUGG----GCAAGGGGGUA----GCAA----UACC---------------------UCCCGGCUGCAAGGGAAU-UUUCAUUAGCUG--GCUGGAUACCGG-------------GCUUCUUGGUAUUUGGC----GAGAUUUUAGGAAGC-UG------GCUACCCAAGCAGCGUGUGCCUGCGGGGUUUGGGUGGU---GAGAU--UUAAAA---CAGAGCACUAAACA-UGUAG----------------------AUCUGUCCGGCG------AAGGCUUACGGAC-GCGGGUUCAAUUCCCGC-CGGCUCCANNN Comam_testo
Uncul_srat1 GGGGCUG-----UCCUGGU--UUCGACGUGGGUUCG-----GGACCGGUGUGGUGCAUGU--CGAGC-UUGAGUGAC--GCUCGUAAAUCUC--------CAUUCA---AAAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA----------------------AUCCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUGAUGGGCUGG----GCAAGGGGGUA----GCAA----UACC---------------------UCCCGGCUGCAAGGGAAU-UUACAUCAGCUG--GCUGCGUGCUGG-------------GCUUCUUAGUACGUGGC----AAGAUCCAAGGAAGC-UG------GCAUCCCGGGUAGCGUGCGCCUGCGCGACUUGGGAGGC---GAGAC--UCAAAA---CAGAACGCUAAACA-UGUAG----------------------AUCUGCCCGGCG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_srat1
Uncul_rice2 GGGGCUG----CCC-UGGU--UUCGACGUGGGUUCG-----GAAUCGGUGUGGUGCAUGU--CGAGC-UUGAGUGGC--GCUCGUAAAUCU---------GCAUUCAA--CAAA-CCAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA---------------------ACACCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUGACGGGCUGG----GCAAGGGGGCC----GCAA----GGCC---------------------UCCCGGCUGCAAGGUUAU-UCACGUCAGCUG--GCCUCCUGCCGG-------------GUACCUUGGCAUGGGGC----GAGAUCCAAGGGUGC-UG------GCCUUCCUUGCAGCGUGCGACUGCGCGGCGUGGAAGGU---GAGAU--CCAAAA---CAGACCGCUAAACA-UGUAG----------------------AUCUGCCCGAAG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_rice2
Uncul_aede1 GGGGCUG----CCC-UGGU--UUCGACGUGGGUUCG-----GAAUCGGCGUGGUGCAUGU--CGAGC-UUGAUUGGC--GCUCGUAAAUCU---------GCAUUCAA--AAAA-CCAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA---------------------ACACCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUGAUGGGCUGG----GCAAGGGGGCC----GCAA----GGCU---------------------UCCAGGCUGCAAGGGAAU-UCACAUCAGCUG--GUCUGGCGCCGG-------------GUACCUUGGCGUUGGGC----GAGAUCCAAGGGUGC-UG------GCAUUCGGCAUAGCGUGCGCCUGCGCGAUGACGGAAGC---GAGAU--UCAAAA---CAGAACGCUAAACA-UGUAG----------------------AUCUGCCCGAUG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_aede1
Polmo_JS666 GGGGCUG----CAC-UGGU--UUCGACGCGGGUACG-----GACGCGCAGUGGGGCAUGC--CGAGC---UUAGUGU--GCUCGUAAAACU---------GACUAA--AACAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCUGCUUAA---------------------UAACCAGUGAG----------------------------CCCUACAACAGCAG-------------------GCCGAUGGGCUGG---GCAAGGGGUCUUUAGCGCAAGUUGAAGG--------------------CUCCCGGCUGUAGGGUCAU-ACACAUCGGCUG--GCCUGGUACCGG-------------GCACCUUGGUAUCAGGC----GAGACAAUAGGAUGC-UG------GCAACCUGUAUAGCGUGCUGCUGCGCGAUACGGGAAGU---GAGAC--UCAAAU---CAGACGGCUAAGCA-UGUAG----------------------AACUACGCGAAG------AAGGCUUGCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Polmo_JS666
Varvx_parad NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUCG-----GAGUCGCAGCGGGGCAUGU--CGAGC---UGAAUGC--GCUCGUAAAACAG--------AUUCAA---ACAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCUGCUUAA---------------------UUGCCAGUGAG----------------------------CCUUGCAACAGUUG-------------------GCCGAUGGGCUGG----GCAAGGGGGUCUGGAGCAAUCCUGACC---------------------UCCCGGCUGCAAGGAUAA-CUACAUGGGCUG--GCUCCGAUCCGG-------------GUACCUUGGGUCGGGGC----GAGAAAAUAGGGUAC-UG------GCGUCCGGUUUAGCGUGUGACUGCGCGACUCCGGAAGU---GAGAC--UCAAAA---CAGAUCACUAAACA-UGUAG----------------------AACUGCGCGAUG------AAGGCUUGCGGAC-GGGGGUUCAACUCCCNN-NNNNNNNNNNN Varvx_parad
Hydro_palle NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUCG-----GACGCGCAGCAGGGCAUGU--CGAGG--UUCUGUCA--CCUCGUAAAUCA---------GCAGAA---AAAAA-CCAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA---------------------ACACCGGUGAG----------------------------CCUUGCAACAGCAG-------------------GCCGAUGGGCUGG----GCAAGGGGGUC----GCAA----GACC---------------------UCCCGGCUGCAAGGUAAU-UUACAUCGGCUG--GUUCUGCGUCGG-------------GCACCUUGGCGCAGGAU----GAGAUUCAAGGAUGC-UG------GCUUCCCGUUUAGCGUGCCACUGCGCGACUCGGGCGGU---GAGAC--CCAAAU---CAGACGGCUACACA-UGUAG----------------------AACUGCUCGAAA------AAGGCUUGCGGAC-GGGGGUUCAACUCCCNN-NNNNNNNNNNN Hydro_palle
Rubri_gelat GGGGCCG----ACC-UGGU--UUCGACGUGGGUGCG-----GAAUUGGAGUGGUGCAUGC--CGAGC--AUCAGUGA--GCUCGUAAAUCC---------AGCUGA---AACAAACCAACUGCGAACGACGAACGU---------------------------------------------------------UUCGCCCUCGCCGCUUAA---------------------ACACCGGUGAG----------------------------CGUCUCAACGGCAG-------------------GCCGAUGGGCCGG----GCCCAA--GCC----GCAA----GGU----------------------GGAAGGCUGAGACGUCAU-GCACAUCGGCUG--GUUGCUCGUCGG-------------GUCACUCGGCGUUCAAC----GAGAC-UC-AGUGAC-UG------GCGUUGUCCGUAGCGUGCUUCUGCGCGACG-GCGGCGU---GAGAC--UCAAAU---CAGACAGCUAAGCA-UGUAG----------------------AUCUACCUGAGG------AUGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Rubri_gelat
Ralst_picke NNNNNNN----NNN-NNNN--NNNNNCGGGGGUUGC-----GAAGCAGCGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAACGACGAACGU---------------------------------------------------------UACGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCGCACUGGCUC-------------------GCUGACGGGCUAG----GGUC-----------GCAA-------------------------------GACCA-GCGAGGUCAU-UUACGUCAGAUA--AGCUUUAGGUGA-------------GUCACGGGCCUAGAGAC----GAAAA-CUUAGUGAA-UC------GCCGUCG-UAGAGCGUGUUCGUCCGCGAUG-CGGCGGU---UAAAU---CAAAU---GACAGAACUAAGUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCNN-NNNNNNNNNNN Ralst_picke
Ralst_solan GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGUAGCGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---ACGCA-AUAACUGCUAACGACAACCGU---------------------------------------------------------UACCAGCUGGCCGCUUAA---------------------UUGCGCGCCGU----------------------------CCUCGCACUAGCUU-------------------GCCGAUAGGCUAG----GGCC-----------GCAA-------------------------------GGCCACGCGAGGUCAU-UCAUAUCGGAUC--GCUUCGGCCGGU-------------GUCACGACGGCCGGGGU----UAACU-CCAAGUGAC-UC------GUCGUCG-CGCAGCGUGUUCGUCCGCGUCG-CGCCGGU---UAAAU---CAAAU---GACUGAACUAAGUA-UGUAG----------------------AACGCUCUGUAG------AGGACUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_solan
Cupri_necat NNNNNNN----NNN-NNNN--NNNNNCGUGGGUUAC-----AAAGCAGUGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAACGACGAACGU---------------------------------------------------------UACGCACUGGCCGCUUAA----------------------UUGCGGCCGU----------------------------CCUCGCACUGGCUC-------------------GCUGACGGGCUAG----GGUC-----------GCAA-------------------------------GACCACGCGAGGUCAU-UUACGUCAGAUA--AGCUCCGGAAGG-------------GUCACGAAGCCGGGGAC----GAAAA-CCUAGUGAC-UC------GCCGUCG-UAGAGCGUGUUCGUCCGCGAUG-CGCCGGU---UAAAU---CAAAU---GACAGAACUAAGUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUACGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Cupri_necat
Uncul_zebu1 GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGCGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAANNNNNNNNNN---------------------------------------------------------NNNNNNNNNNNNNNNNNN----------------------NNNNNNNNNN----------------------------NNNNNNNNNNNNNN-------------------NNNNNNNNNNNNN----NNNNN----------NNNN-------------------------------NNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNN----NNNNN-NNNNNNNNN-NN------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNN---NNNNN---NNNNN---NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_zebu1
Ralst_eutro GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGUGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAACGACGAACGU---------------------------------------------------------UACGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCGCACUGGCUC-------------------GCUGACGGGCUAG----GGUUC----------GCAA-------------------------------GAACCAGCGAGGUCAU-UUACGUCAGAUA--AGCCCCGUCGGU-------------GUCACGACUGCGGGGAC----GAAAA-CCAAGUGAC-UC------GCCGUCG-UAGAGCGUGUUCGUCCGCGAUG-CGGCGGU---UAAAU---CAAAU---GACAGAACUAAGUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_eutro
Ralst_metal GGGGCCG----ACC-UGGU--UUCGACGUGGGUUAC-----AAAGCAGUGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAACGACGAACGU---------------------------------------------------------UACGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCGCACUGGCUC-------------------GCUGACGGGCUAG----GGUUC----------GCAA-------------------------------GAACCAGCGAGGUCAU-UUACGUCAGAUA--AGCUUCGGGAGU-------------GUCACGGGCCCGAGGAC----GAAAA-CCUAGUGAC-UC------GCCGUCG-UAGAGCGUGUUCGUCCGCGAUG-CGCCGGU---UAAAU---CAAAU---GACAGAACUAAGUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_metal
Burkh_thail GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUGUCCGGC-------------GUCACGACGGCCAGGUC----GAAAA-UUGAGUGAA-UC------GCCGUAA-CGGAGCGUGUUCGUCCGCGACG-UCACGGU---UAAAU---CAAAC---GACAGAACUAAACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_thail
Burkh_pseud GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUGUCCGGC-------------GUCACGACGGACAGGUC----GAAAA-UCAAGUGAA-UC------GCCGUAA-CGGAGCGUGUUCGUCCGCGACG-UCACGGU---UAAAU---CAAAU---GACAGAACUAAACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_pseud
Burkh_malle GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUGUCCGGC-------------GUCACGACGGACAGGUC----GAAAA-UCAAGUGAA-UC------GCCGUAA-CGGAGCGUGUUCGUCCGCGACG-UCACGGU---UAAAU---CAAAU---GACAGAACUAAACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_malle
Burkh_fungo GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGC-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUU-------------------ACUGACGGGCUAGA-----------