Gram-Positives' tmRNA Alignment 15-Feb-2006 by Kelly Williams for The tmRNA Website, with base-pairing color-coded as in home page diagram. Underline marks the predicted reading frame for the proteolysis-inducing peptide tag. Lowercase marks segments not homologous to tmRNA, intervening segments that are absent in the mature tmRNA, and portions of the expected 3-prime CCA tail that are not encoded in the genome. FIRMICUTES: Clostridia Alkph_metal GGGGGCG-----UACUGGU--UUCGACGGGGGUUU------AGAGUCAUUAGUGGCGAGC--CGUGU-UUAGCUUGGG-AUCACGUAACAAA--------CUGAGCA--AUAAAUACAAACGCAAACGAUAAUUAU---------------------------------------------------------UCACUAGCUGCAGCGUAA----------------------UAGCACAGCU----------------------------CGUUUCU-CCUAGGCU------------------UCCCAC-AGUCUAGACA-GAAACGUCAUCUUA-----------------------------------------------------GUGGGGAA-----CGUCUUAAGGCU----------GUCGCGA--CCUUAAGUUG--UACAA------UUGUGACUA-------GCUGAUCUUAAAACCCGUUGCUAGGUGUUAGGUAAAGC---GAAAUUCUAAAG---UAG-CAACUACGCU-CGUAG-----------------------AAGCUGAUGGU----GAAGGGCCUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACCA Alkph_metal Clost_aceto GGGGGCG----CUUUUGGU--UUCGACGGGGAUGAU----GUUACGUUUGAGAAGCGAGU--CGAGGGAACCUGUGGA-CCCGCGUUAAAAAA-------CUAUAGGCCUUAAAAAUAAAGGAUAACGAAAAUAAU---------------------------------------------------------UUAGCUUUAGCUGCGUAG--------------------------UCAGCUAA--------------------------CGUCAG--CCUGAGAG------------------UCCCGC-GACUCAGAGU-CUGGCGUCGACA-------------------------------------------------------GCGGGGAA-----CCGAGCCUUACAA---------AGCUUUGAGUAAGGAACGG--AAUUUA-----UGAAGCUA--------CUGAAGUGAAAAGCUUGUUUGUAGGCGUUUCAUGGAGG---GAAUGUUAAAA----UAC-AAACUGCACU-CGGAG-----------------------AUGCUUAAAUG----AAACCAUUUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACua Clost_aceto Clost_perf1 GGGGGCG-----UUUUGGC--UUCGACGGGGGUAA-----GAUGGGUUUGAUAAGCGAGU--CGAGGGA-AGCAUGGU-GCCUCGAUAAUAAA-------GUAUGCA--UUAAAGAUAAACGCAGAAGAU---AAU---------------------------------------------------------UUUGCAUUAGCAGCUUAA--------------------UUUAGCGCUGCU----------------------------CAUCCUU-CCUCAAUU------------------GCCCAC-GGUUGAGAGUAAGGGUGUCAUUUAAAA---------------------------------------------------GUGGGGAA-----CCGAGCCUAGCAA---------AGCUUUGAGCUAGGAACGG--AAUUUA-----UGAAGCUUA-------CCAAAGAGGAA-GUUUGUCUGUGGACG-UUCUCUGAGG---GAAUUUUAAAA----CACAAGACUACACU-CGUAG-----------------------AAAGUCUUACU----GGUCUGCUUUCGGAC-ACGGGUUCGACACCCGU-CGCCUCCACCA Clost_perf1 Clost_perf2 GGGGGCG-----UUUUGGC--UUCGACGGGGGUAA-----GAUGGGUUUGAUAAGCGAGU--CGAGGGA-AGCAUGGU-GCCUCGAUAAUAAA-------GUAUGCA--UUAAAGAUAAACGCAGAAGAU---AAU---------------------------------------------------------UUUGCAUUAGCAGCUUAA--------------------UUUAGCGCUGCU----------------------------CAUCCUU-CCUCAAUU------------------GCCCAC-GGUUGAGAGUAAGGGUGUCAUUUAAAA---------------------------------------------------GUGGGGAA-----CCGAGCCUAGCAA---------AGCUUUGAGCUAGGAACGG--AAUUUA-----UGAAGCUUA-------CCAAAGAGAAA-GUUUGUCUGUGGACG-UUCUCUGAGG---GAAUUUUAAAA----CACAAGACUACACU-CGUAG-----------------------AAAGUCUUACU----GGUCUGCUUUCGGAC-ACGGGUUCGACACCCGU-CGCCUCCACCA Clost_perf2 Clost_perf3 NNNNNNN-----NNNNNNN--NNNNACGGGGGUAG-----GAUGGGUUUGAUAAGCGAGU--CGAGGGA-AGCAUGGU-GCCUCGAUAAUAAA-------GUAUGCA--UUAAAGAUAAACGCACGAGAU---AAU---------------------------------------------------------UUUGCAUUAGCAGCUUAA--------------------GUUAGCGCUGCU----------------------------CAUCCUU-CCUCAAUU------------------GCCCAC-GGUUGAGAGUAAGGGUGUCAUUUAAAA---------------------------------------------------GUGGGGAA-----CCGAGCCUAGCAA---------AGCUUUGAGCUAGGAACGG--AAUUUA-----UGAAGCUUA-------CCAAAGAGGAA-GUUUGUCUGUGGACG-UUCUCUGAGG---GAAUUUUAAAA----CACAAGACUACACU-CGUAG-----------------------AAAGUCUUACU----GGUCUGCUUUCGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Clost_perf3 Clost_therm GGGGGCG-----UAUUGGU--UUCGACGGGAUUGU------UGAAGCUUGAGUAGCGGGU--AGAGGA-UUCUCGUUG-GCCUCUUUAAAA---------AACGAGAA-ACUAAAAUAAACGCUAACGAAGAUAAU------------------------------------------------------UACGCUUUAGCUGCUGCCUAA---------------------UAUAGGCAGC-----------------------------CCGUCAG-UCCAGGGU------------------UCCUGC-GCCUUGGGUAGCUGGCGUCAUUAAGU-------------------------------CAGGCCUUUUGAGUGGGAAGGUUAAACUCUAGAACUGU-CACAGUGGU--------AGCCUUGAGCUGUG-AUGG--AUUUUA------AAGGCUA--------CUGAUAUCCAAAGCCUGCCCAUGGGCGUUGGGUUGAGG---GAAUUUUUAAAA---CAU-GGGCUGCACC-CGGAG-----------------------AAGCUCUUGUG----GAUACGAUUUCGGAC-AGGGGUUCGACUCCCCU-CGCCUCCACCA Clost_therm Clost_botul GGGGGCG-----CAAUGGU--UUCGACGGGGGCAAA-----UUGCUCCUGGGAAGCGAGU--CGAAGGG-AUCCUGUA-CCUGCGUUAAAAAA-------CUGGGAA-CUUAAAUAUAAUUGCAAACGAU---AAU---------------------------------------------------------UUUGCAUUAGCUGCCUAA---------------------UAGUUGCAGCU----------------------------CGUCAG--CCUAAGAG------------------UCCCAC-GACUUAGGGU-CUGGCGUCGACA-------------------------------------------------------GUGGGGAA-----CCGAGUCUUACAA---------AGCUUUGAGUAAGGAACGG--AAUUAA-----UGAAGCUA--------CUGAAUCUAGGAGCCUGUUUAUCGGCGCUUAGAGGAGG---GAAUGUAAAAG----GAU-AAACUGCACU-CGGAG-----------------------AUGCCCAGGGG----UUGCUGCUUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACCA Clost_botul Clost_tetan GGGGGCG----UAAAUGGU--UUCGACGGGGGCAAG-----UUGCUCCUGAGAAGCGAGU--CGAGGGG--UCCUGGG-CCCGCGUUAAAAAA-------CUGGGAA---AAAUUAUAAACGCAGACGAU---AAU---------------------------------------------------------UUCGUUUUAGCUGCCUAA---------------------UUAGUGCAGCU----------------------------CGUCCUA-CUUGGGAG------------------UCCCAC-GACCUAAGAU-AGGGCGUCAAUUA------------------------------------------------------GUGGGGAA-----CCGAGCUCUACAA---------AGCUUUGAGUAGAGAACGG--AACUUA-----UGAAGCUA--------CUGAAUCUAGAAACCUGUUUAUCGGUGUCUAGAGGAGG---GAAUGUUAAAA----GGU-AAACUGCACU-CGGAG-----------------------AUGCUCAGGGG----UUACUGCUUUCGGAC-AGGGGUUCGAUUCCCCU-CGCCUCCACCA Clost_tetan Clost_diffi GGGGGCG-----UAAAGGU--UUCGACGUGGGUUU------GGAACUUGAGGCUGCAUGU--CGUGUUA--CUCUGG--GUCACGUAAAAA---------CUGGGGAACUUUAAAAUAAACGCAGACGAU---AAU---------------------------------------------------------UUCGCGAUAGCAGCCUAG------------------------UUGCUGCU----------------------------CGUCCC--UCUUAGUCC-----------------UCCUGCCGACUAAGACU--GGACGUCAUUAU------------------------------------------------------GCAGGGAA-----CUACUUUAGGGGU---------GUCUCGA--CUUGAAGUAG---AUUAA-----UUGGGACUG-------GCUAAGCAUAGAGCCUGCCACUUGGCGCUAUGUGAGGU---GAGAUAUUAGUG---AAGUUGGCUAAGCA-UGUAG-----------------------AUGCAGCAAGG----AAAAGAUUUGCGGAC-AGGGGUUCGACUCCCCU-CGUCUCCACCA Clost_diffi Clost_diff2 GGGGGCG-----UAAAGGU--UUCGACGUGGGUUU------GGAACUUGAGGCUGCAUGU--CGUGUUA--CUCUGG--GUCACGUAAAAA---------CUGGGGAACUUUAAAAUAAACGCAGACGAU---AAU---------------------------------------------------------UUCGCGAUAGCAGCCUAG------------------------UUGCUGCU----------------------------CGUCCC--UCUUAGUCC-----------------UCCUGCCGACUAAGACU--GGACGUCAUUAU------------------------------------------------------GCAGGGAA-----CUACUUUAGGGGU---------GUCUCGA--CCUGAAGUAG---AUUAA-----UUGGGACUG-------GCUAAGCAUAGAGCCUGCCACUUGGCGCUAUGUGAGGU---GAGAUAUUAGUG---AAGUUGGCUAAGCA-UGUAG-----------------------AUGCAGCAAGG----AAAAGAUUUGCGGAC-AGGGGUUCGACUCCCCU-CGUCUCCACCA Clost_diff2 Rumin_albus GGGGAUG-----UAAAGGU--UUCGACGGGGGUCU------UGAAGGGCGAUAAGCGAGU--GGAGG---AGCGCAC---UCUCCUUAAACGG-------CGUACGU--UUUAAAUUAGACGACAACGAUAAU------------------------------------------------------------UUUGCAAUGGCAGCCUAA------------------------GGGCAGCC----------------------------CGUCUU---GCCUGAGAGUAC-------------CACGGC-UUGGGUA-AAGGCGUCGACUA---------------------------------------------------------GUGGUGAACGUC-GGCAGGCGAUGACUGUGA------CCUGUCGGUGUAUUGCAGUCUACCAA---AGCGAGGGGCG------UGUCUGUUU---GCCCGUGCGGAGGG--AAACGGCGCA---AGCCGAAAUAA-------CCGACUAGACU-CGUAG-----------------------AAAUUCGCGUG----AAUGGGCUUUCGGAC-AGGAGUUCGAUUCUCCU-CAUCUCCACCA Rumin_albus Destb_hafni GGGGGUG-----CACUGGC--UUCGACGGGGGUCGC-----AAAAUCGCUUGGCGCAUGC--CGAGG-GGUAGCUUU--CCUCGUAAAAC----------AGCUGC---AAAACUCUAGUUGCCAACGACGACNAAC--------------------------------------------------------UACGCUCUCGCCGCUUAA------------------GGCGUAAGC---------------------------------CCCGAAACUGCUUGU------------------GUCCGUGCUCGCAGCGUA--GGGUCACUAU-------------------------------------------------------CACGGAAUC----GCCGGGAGCGGCC----------GCCUGCCAGCUCCCG----UUCAACCUAUA--GCAGGC-UG------GUCCUUGGAUGCGCUUCGCGCGCCGUGCUGUCCCGGGAC---GAGAUCUA------ACGGAGCGCUAAGCA-UGUAG-----------------------UGCCGGGGAUG-----GAGUGCCUUCGGAC-GGCGGUUCGAUUCCGCC-CACCUCCACCA Destb_hafni Caldc_sacch GGGGGCG---UGUUUUGGAA-UUCGACGGGGGCAGU-----CGGAUUCCAAAUAGCGGGU--AGUGGU-UUUCUCGGU-ACCACUAUAAAAA-------ACCGAGAAG---AAAAAUAACUGCAGACAAAGCUGAA---------------------------------------------------------CUCGCUUUAGCUGCAUAA--------------------GAUAAGCAGCUAA---------------------------CGUCCGCCGGAGGUGCCCACG------------GCCUCCGAGUCGGGCGCCAACCCACG-------------------------------------------------------------UGGGGCA----CCGAAAGUAAGGUC---------GCCUGAGCCUUACUUUUGG--GUCAAAU----CUCAGGCUG--------GGGAAGAAAAAGCCUGUCAGUGGGCGUUUUCUUCCC----GAGAAUUUAAGUA---CACUGACUGCACC-CGGAG-----------------------AAGUUUGGAGU----UCGAUGCCUUCGGAC-GGGGGUUCAAAUCCCCC-CGCCUCCACCA Caldc_sacch Crbth_hydro GGGGGCG-----UAAAGGG--UUCGACGGGGGAGCG----AAGGGCCGAAAGUAGCGAGG--CGAGGAC-CCCAUCUU-ACCUCGUUAAAAAU--------GGUGGG---AAAAGAUAACUGCCAACGAA---AAC---------------------------------------------------------UACGCUUUAGCUGCUUAA----------------------UAACGCAGCUA---------------------------CGUCCUGACGGAAGCUU-----------------GCCCGG-GGCUUCUGUC-GGGGCGUGACCGGA-----------------------------------------------------CCGGGCUG----GCUUAUGAAGGGU-----------GUCCCGGCUCUUCAUAAGCGAGAUUUU----ACGGGAUA--------GCCCGAUUGUG-GCCUGCCGGUAGGCAC-CAAUCGGGU---GAAAGCAAAAA----UAC-CGGCUGCCCU-CGGAG-----------------------AAGCUUUCGGU----UCUUGUCCUCCGGACGGUGGGUUCGAUUCCC-CCCGCCUCCACCA Crbth_hydro Helio_mobil NNNNNNN-----NNNNNNN--NNNNNNGGGGAACGU-----GUUUGCUUGGGAUGCGAGC--CGGGU-UGCCGCCAGGA--CCGUAAAAAG---------GGCGG----AAGGCUUUAAUUGCCGAAGAUAAC------------------------------------------------------------UACGCUUUAGCUGCUUAA------------------UUGCAGUCGAA-------------------------------CCUCUUCUCCUCUGU------------------GCUCUCGGUGAGGAUGUAAGGGGUCAUUUAA-------------------------------------------------------GAGAGCUG----GCUUCGACCAAUUC----------UCGG--AGGUCC--AAGC--GAGAUUUA----UCGAA-UA------GCCUGACC--AACCUCUGUCUGCCGUGCGGAAGGAAGGC---GAAAUCUAAA----ACGACAGACUACGCU-CGUAG-----------------------UGUCCUUUGUG----GGCAUUUCUUCGGAC-GCGGNNNNNNNNNNNNN-NNNNNNNNNNN Helio_mobil Thana_tengc GGGGGUG-----UGUUGGU--UUCGACGGGGGCGG-----UCGAGGUAAAAGUAGCGAGC--CGAGUU--CUCCACC--AGCUCGUAAAAAA--------GGUGGA----AAAAAAUAAACGCAGACAGAGAA------------------------------------------------------------CUCGCUUACGCUGCCUAA---------------------UUAAAGGCGGC----------------------------CGUCCAG-CCUGAAAU------------------GCCCAC-GUUUCAGGA-CUGGGCGUCAAAAGA-----------------------------------------------------GUGGGGAA-----CUGGUUUUGCCUG---------CGCCUCGGGGCAAAACCGG--AAUAA------UGAGGCUA--------CCGAAGCGGUUAUCCUGUCGCUGGGAGAACCGCUGAGG---GAAAGCUAAAA----CAG-CGACUGCGCU-CGGAG-----------------------AAGCUUUUACC----GGGACGCCUUCGGAC-CGGGGUUCGAAUCCCCG-CACCUCCACCA Thana_tengc Copth_prote GGGGGCG-----AAAAGGU--CUCGACGGCGAGUC------GGAGCCUUGAGCUGCAGGC--AGGG--UUGGCUGCCAC--ACCUUAAAAAG--------GGUAGCAAGGCAAAAAUAAAUGCCGAACCAGAA------------------------------------------------------------UUUGCACUAGCUGCUUAA----------------------UGUAAGCAGC----------------------------CGCUCUCCAAACUGAG------------------GCUGCA-UAAGUUUGG-AAGAGCGUCAACCCA-----------------------------------------------------UGCAGCGG-----CUCUUAAGCAGUG----------GCACCAGCUGUUUAAGGG--UGAAAAGAG--UGGUGCUG--------GGCAGUGCG--GUUGGGCUUCCUGGGC--UGCACUGUC---GAGACUUCACA-----GGAGGGCUAAGCC-UGUAG-----------------------ACGCGAAAGGU----GGCGGCUCGUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Copth_prote Moore_therm GGGGGCG-----UAAUGGU--UUCGACGGGGGUAG-----CAUUGGCAGUAGUAGCCAGG--CGAG---AUCCCACCGG--CUCGUUAAA---------CGGUGGA--ACGGCUAUUAAGUGCCGACGAUAAU------------------------------------------------------------UUAGCUCUGGCUGCUUAA-------------------UUAAAAAGUAGCC----------------------------CAUCCGU-CUGGUCCUG-----------------GCCUGCGGGGACCAGUACCGGGUGUCAAAUCUA---------------------------------------------------GCAGGCUA------CCGGCAAGGCCCC----------GGCCCGGGGGCCUGAAGG--GAAUCUCAAG-CGGGCUGG--------CCCGAGGGU--AUCCGGUUUCCGGGAG-ACCCGACGGC---GAGAUUGAAAA-----CGGAAACUAUCCU-GGUAG-----------------------AAGCUACUGUG----GAUGUACCUUCGGAC-GGGGGUUCGACUCCCCC-CGCCUCCACCA Moore_therm FIRMICUTES: Mollicutes Mespl_floru GGGGAUG-----UCCUGGU--UUCGACAGGAUACUC-----UGGUCAUAUAAUAGCA-GU--GGUGUGGUAGACCAUA--AUACUUCUA-----------GGUUUG--------AUAAAAUGCAAACAAAAACGAA---------GAAAACACAAACGAAGUUCCAACAUUUAUGUUAAAUGCUGGACAAGCAAAUUACGCUUUCGCUUAA------------------------UUUGACUUAAAU------------------------ACAAAUAUACGUUUGGCAAUUUUUAAUAGUC--UUGGAAU-CUGUUAAUUAUUGU-ACAUACCA------------------------------------------------------AUUCCAAUA------GAAAUUAUGA----------UCGUAAUAAAUAAUUUU-----GAAACUCA--AUUACGGAUG------UUAUAUUAGUCUUUUGAUAAUUUUAUUUAAUAUAG-------CAAAUUAG------AAAAUUAUCUAAAC--UGUAG-----------------------AAUUUAUAUGA----UUCGGUAUUUUGGAC-GUGGGUUCGAUUCCCAC-CAUCUCCACCA Mespl_floru Spipl_kunke GGGGAUG-----UUCCGGU--UUCGACAGGAAUGAU------CUACUAAUAUUGGCA-GU--AGU---UUAGUAG-------ACUAUAAUG---------CUACUAG--GUUUGAAGAAACGCAAGCAAAAAACAA---AAAGAAGACAAAAUUGAAAUGCCAGCUUUUAUGAUGAACAAUCAAUUAGCAGUAUCAAUGUUAGCAGCUUAA-----------------------UUCCUCGCUGUUAGAGGAUCGCUAGCCGUA-------AUAGUAGUUAAUUG-------------------UAGAUUA-UUAACUAUUAUCG-UAUCUCAAGUCU---------------------------------------------------UAAUCUAAUA----GAAAUUCUAAUU----------GAUAAUGUUAGAAUUUU--GAAAGUCU----UAUUAUCUA--------AUUAUUUAAUUAGUUGUCUAAUCCUAUUAUUAAAUAAU-GAAAAAAAGAU------GAUUAGACUAAAC--UGUAG-----------------------AAGAUAUUAGA----AUGUUAUUUGUGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCACCA Spipl_kunke Mycpl_capri GGGGAUG-----UCAUGGA--UUUGACAGGAUAUCU-----UUAGUACAUAUAAGCA-GU--AGUGUUGUAGACUAUA-AAUACUACUA-----------GGUUUA--------AAAAAACGCAAAUAAAAACGAA------GAAACUUUUGAAAUGCCAGCAUUUAUGAUGAAUAAUGCAUCAGCUGGAGCAAACUUUAUGUUUGCUUAA------------------------UAACUACUAGUUUA----------------------GUUAUAGUAUUUCACGAAUUAUAGAUAUU----UUAAGCU-UUAUUUAUAACCG-UAUUACCCA------------------------------------------------------AGCUUAAUA------GAAUAUAUGA----------UUGCAAUAAAUAUAUUU-----GAAAUCUA--AUUGCAAAUG-------AUAUUUAACCUUUAGUUAAUUUUAGUUAAAUAU-------UUUAAUUAG------AAAAUUAACUAAAC--UGUAG-----------------------AAAGUAUGUAU----UAAUAUAUCUUGGAC-GCGAGUUCGAUUCUCGC-CAUCUCCACCA Mycpl_capri Mycpl_mycoi GGGGAUG-----UCAUGGA--UUUGACAGGAUAUAA-----CCAGUACAUAUAAGCA-GU--AGUGUUGUAGACUAUA-AAUACUACUA-----------GGUUUG--------AAAAAACGCAGACAAAAACGAA------GAAAACUUUGAAAUGCCAGCAUUUAUGAUCAACAAUGCAUCAGCUGGAGCAAACUAUAUGUUUGCUUAA-----------------------UAACUACUUAGUUUA----------------------GUUAUAGUAUUUCACGCAUUAUAGAUAUU----UUAGGCU-UUAUUUAUAAUCG-UAUUACCCA------------------------------------------------------AGUCUAAUA------GGAUAUAUGA----------UUGCAAUAAAUAUAUCU-----GAAAUUA---AUUGCAAAUG-------GUAUUUAACCUUUAGUUAAUUUUAGUUAGAUAC-------UUUAAUUAG------AAAAUUAACUAAAC--UGUAG-----------------------AAAGUAUGUAU----UAGUGUAUCUUGGAC-GCGAGUUCGAUUCUCGC-CAUCUCCACCA Mycpl_mycoi Urepl_parvu GGGGAUG-----UCACGGU--UUCGACGUGACACAU------UAAUUUUUAAUUGCA-GU--GGGG---UUAGC-------CCCUUAUC-----------GCUUUCGA-GGCAUUUUAAAUGCAGAAAAUAAAAAAUCUUCUGAAGUAGAAUUAAACCCAGCGUUUAUGGCUUCAGCUACUAAUGCAAACUACGCUUUUGCGUAC---UAA-----------------------UUAGUUAUUAGUAGAAAC-------------------GUUCAUUAACAUAAUU-----------------ACUAUUGGUUGGUUUUUGGGCUUAUUUUA---------------------------------------------------------CAAUAGU----UUUAAAUUUAAAAUUC-----UUAUUUGUUGUUUAAAUUUAAAUAGAUU---UAACAAAUAGU-------UAGUUAAUUUUAAAUUUGUUUUAUUAGUUAUUAACUA----CACUAUUUUU-------AAUAAAACUAAAC--UGUAG-----------------------AUAUUAUUAAU-----UAUGUGUUGCGGAA-AGGGGUUCGACUCCCCU-CAUCUCCACCA Urepl_parvu Mycpl_pulmo GGGGAUG-----UAAUGGU--UUCGACAGGCAUUUA------UAACCUUAUAAUGCA-GU--AGUU---UGGCA-------GACUAUAA---------UGCUACUAGGCGUUUCAAUAAACGGAACAAAAAAACAA------GAAAAUGACUAUCAAGAUUUAAUGAUUAGUCAAAAUCUAAACCAAAAUCUAGCUUUUGCUAGCGUUUAG---------------------------CAGCUA---------------------------GUUGCUCCAUUAUAU--------------------GUUCUGGAUAAUGGAAGCA-UGCCUA----------------------------------------------------------AGAACUUAGU---GAAGUUG---------------CUCUAGCGUCAAUUUCAUGAAAUUUA-------GCUAGU-------UGAUUUAAUAGAAUUUUGUUCAAUUUUUUCUAUUAAAUCA--ACAAUUA-------AAAAUUGGAAUAAAC--UGUAG-----------------------AUUUAUAAGCA---UUGUGAAUGUGUGGAC-CCGGGUUCGACUCCCGG-CAUUUCCACCA Mycpl_pulmo Mycpl_mobil GGGGGUG-----UAAUGGA--UUUGACAUGCAUAAG------GUUUAUUAGACUGCA-GU--ACUA---UGGUA-------GAGUAUAA-----------GACCACUAGGCUUUUUCAAACGGAAAAGAAAAACAA------------------UUAGAAGUUUCUCCUUUAUUAAUGAGUUCUUCACAAUCAAAUCUAGUUUUUGCUUAA--------------------------UUAAAAAUUAGU----------------------CGCUUCUAAGUGGU--------------------GUUGCUACAUUUAUAAGUG--UUGUUU----------------------------------------------------------AGCAAAUAUA---GUUUUAUGAU------------CUAAUUAAAUAAGAC--CGAAUAAAA------AAUUAGU-------UAAUAUAAAUGUUUUUAGUUAAGUUUCGAUUUUAUAUUA--AUAUCA----------AAAUUUAGCUAAAC--UGUAG-----------------------AUGUCUCUUAA----AUUUUAUGUGUGGAC-CCGGGUUCAACUCCCGG-CAUCUCCACCA Mycpl_mobil Uncul_toxo1 NNNNNNN-----NNNNNNC--UUCGACAUACAUAAA------AGGAUAUAAAUUGCA-GU--GGUC---UUGUA-------AACCAUAA-----------GACAAUU--UCUUUACUAAGCGGAAAAGAAAACAAA------------AAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAA---------------------------AAAACUAG-------------------------UAGACCAAUUUG---------------------CUUCUCACGAAUUGUAAUCUUUAUAUUA----------------------------------------------------------GAGAAUA------GUUAAAAAUC-------------UGAUCACUUUUUAAU--GAAUUUAUA------GAUCAC-----AGGCUUUUUUAAUCUUUUUGUUA-UUUUAGAUAAAGAGUCU----UCUUA----------AAAAUAACUAAAC--UGUAG-----------------------UAAUUUAUAUU----UAAUUAUGUGUGGAC-CCSGGUUCAACUCCCGG-VAUCUCCACCA Uncul_toxo1 Uncul_toxo2 NNNNNNN-----NNNNNNC--UUCGACAUACAUAAA------AGGAUAUAAAUUGCA-GU--GGUC---UUGUA-------AACCAUAA-----------GACAAUU--UCUUUACUAAGCGGAAAAGAAAACAAA------------AAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAA---------------------------AAAACUAG-------------------------UAGACCAAUUUG---------------------CUUCUCACGAAUUGUAAUCUUUAUAUUA----------------------------------------------------------GAGAAUA------GUUAAAAAUC-------------UGAUCACUUUUUAAU--GAAUUUAUA------GAUCAC-----AGGCUUUUUUAAUCUUUUUGGUAAUUUUAGAUAAAGAGUCU----UCUUA----------AAAAUAACUAAAC--UGUAG-----------------------UAAUUUAUAUU----UAAUAAUGUGUGGAC-CCGGGUUCAACUCCCGG-CAUCUCCACCA Uncul_toxo2 Uncul_humn4 NNNNNNN-----NNNNNGC--UUCGGCAUACAUAAA------AGGAUAUAAAUUGCA-GU--GGUC---UUGUA-------AACCAUAA-----------GACAAUU--UCUUUACUAAGCGGAAAAGAAAACAAA------------AAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAA---------------------------AAAACUAG-------------------------UAGACCAAUUUG---------------------CUUCUCACGAAUUGUAAUCUUUAUAUUA----------------------------------------------------------GAGAAUA------GUUAAAAAUC-------------UGAUCACUUUUUAAU--GAAUUUAUA------GAUCAC-----AGGCUUUUUUAAUCUUUUUGUU-AUUUUAGAUAAAGAGUCU----CCUUA----------AAAAUAACUAAAC--UGUAG-----------------------UAAUUUAUAUU----UAAUUAUGUGUGGAC-CCGGGUUCAACUCCCGG-CAUCUCCACCA Uncul_humn4 Uncul_humn5 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNNNN------NNNNNNNNNNUUGCA-GU--GGUC---UUGUA-------AACCAUAA-----------GACAAUU--UCUUUACUAAGCGGAAAAGAAAACAAA------------AAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAA---------------------------AAAACUAG-------------------------UAGACCAAUUUG---------------------CUUCUCACGAAUUGUAAUCUUUAUAUUA----------------------------------------------------------CAGAAUA------GUUAAAAAUC-------------UGAUCACUUUUUAAU--GAAUCUAUA------GAUCAC-----AGGCUUUUUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNN----------NNNNNNNNNNNNN--NNNNN-----------------------NNNNNNNNNNN----NNNNNNNNNNAGGCUUUUUNNNNNNNNNNNNNNNNNNNNNNNNNN Uncul_humn5 Uncul_humn6 GGGGGUG-----UACUGGC--UUCGACAUACAAA--------AGGAUAUAA-UUGCA-GU--GGUC---UUGUA-------AACCAUAA-----------GACAAUU--UCUUUACUAAGCGGAAAAGAAAACAAA------------AAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAA---------------------------AAAACUAG-------------------------UAGACCAAUUUG---------------------CUUCUCACGAAUUGUAAUCUUUAUAUUA----------------------------------------------------------GAGAAUA------GUUAAAAAUC-------------UGAUCACUUUUUAAU--GAAUUUAUA------GAUCAC-----AGGCUUUUUUAAUCUUUUUGUU-AUUUUAGAUCAAGAGUCU----UCUUA----------AAAAUAACUAAAC--UGUUG-----------------------UAANNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_humn6 Mycpl_penet GGGGAUG-----UCACGGU--UUCGACAUGAAUGGUU---GAUCUUCAAAUGCAGCA-GG--GUAA---GCCCU-------UUACAGCU----------GUCGAGGC------UAAUAAAUGCUAAGAACAAUAAAAACGAAGCUGUUGAAGUAGAAUUAAACGACUUUGAAAUCAACGCUUUAAGCCAAAACGCUAAUUUAGCUUUAUACGCUUAAUU----------------------------------------------------ACAUUUGGUAAUAAGUUCAUAUCUUUU--------UCUAGGUAGGUAUGAAUGUUUAAUAA----------------------------------------------------------CUAGAUA------GCUAAUUUAAU------------UCCUAUAACAAUUAGU-GAAGUUCGU-----UAGGAUUA-------CUUUUAUUUAUGGGUUGUUCUUUGCCUCUAUUUAAAAG--GACAUAUUAA------AGUUAGAACUAAGC--UGUAG-----------------------AUUUUGUCGCA----UUGCUAUUUGUGGAA-ACGGGUUCGACUCCCGU-CAUCUCCACCA Mycpl_penet Mycpl_arthr GGGGGUG-----UAAUGGC--UUCGACAGGCACUGG------AUUUAAUAAAUUGCA-GU--GGUU---GGU---------AACCUAAA-----------ACCAUCUAGGCUUUUUUAAACGGAAACUUAGAAACU---UCUGAAGACAAGAAACUUGAUCUUCAAUUUGUGAUGAACUCACAAACACAACAAAAUCUACUAUUUGCUUAA---------------------------UAAAUCGUAGU----------------------CAGGCGAAUAUAU--------------------UAGUUUCAAAUAUUUGCUUUG-UCGCUUA---------------------------------------------------------GGAACUA-----UGCCUUAACUAA------------AGUAGCUAAGUUAAGUG-UUAAAUAAUU---GCUACUCAA--------AUUUAUUGACAUUUGUUAAUUAGAUAAAUAAAUGGGU---CUUUCAC-------UUAAUUAACUAAAC-UUGUAG-----------------------ACAUUUAUUAA----UGAAAGUGUGUGGAC-CGGGGUUCGAUUCCCCG-CAUCUCCACCA Mycpl_arthr Mycpl_genit GGGGAUG-----UUUUGGG--UUUGACAUAAUGCUGA----UAGACAAACAGUAGCA-UU--GGGG---UAUGC-------CCCUUACA-----------GCGCUAG---GUUCAAUAACCGACAAAGAAAAUAAC---------GAAGUGUUGGUAGAUCCAAAUUUGAUCAUUAACCAACAAGCAAGUGUUAACUUUGCUUUUGCAUAA-----------------------GUAGAUACUAAAGCU----------------------ACAGCUGGUGAAU--------------------AGUCAUAGUUUGCUAGCUGU-CAUAGUU---------------------------------------------------------UAUGACUC------GAGGUUAAAUC-------------GUUCAAUUUAACCUU-UAAAAAUA-------GAACUUG---------UUGUUUCCAUGAUUGUUUUGUGAUCAAUUGGAAACAA-GACAAAAAUC-------CACAAAACUAAAA--UGUAG-----------------------AAGCUGUUUGU---UGUGUCCUUUAUGGAA-ACGGGUUCGAUUCCCGU-CAUCUCCACCA Mycpl_genit Mycpl_pneum GGGGAUG-----UAGAGGU--UUUGACAUAAUGUUGA----AAGGAAAACAGUUGCA-GU--GGGG---UAUGC-------CCCUUACA-----------GCUCUAG---GUAUAAUAACCGACAAAAAUAACGAC---------GAAGUUUUGGUAGAUCCAAUGUUGAUCGCUAACCAACAAGCAAGUAUCAACUACGCUUUCGCUUAG------------------------AACAUACUAAAGCU----------------------ACACGAAUUGAAU--------------------CGCCAUAGUUUGGUUCGUGU-CACAGUU---------------------------------------------------------UAUGGCUC------GGGGUUAACUG-------------GUUCAACUUAAUCCU-UAAAUUAU-------GAACUUA---------UCGUUUACUUGUUUGUCUUAUGAUCUAAAGUAAGCGA-GACAUUAAAA-------CAUAAGACUAAAC--UGUAG-----------------------AAGCUGUUUUA---CCAAUCCUUUAUGGAA-ACGGGUUCGAUUCCCGU-CAUCUCCACCA Mycpl_pneum Mycpl_hyop1 GGGGGUG-----UUUUGGU--UUUGACAAUUAAAAAA-----AAUUUCUAAGAUGCA-GU--GGUU---UGGUA-------GACCAUAA------------UACCGA--AAUAAUCAAAACGCAAAAAAUUCAAAA---AAAUCUCCAAACGAAGCAAAAAUUGAUUACCCAUUUUUAUCAUAUAACCAAUUAAAUUUUGCAUACGUUUAA------------------------------------------------------------------------------------------------------------------------------UCAAUUUAUUAUAAUAUAUCCUUAAAAAUUUAAAUUUUAUCAUGUAUACGGGCCUCCCAUUUCUGUAGCUUGAAAAAUAUUUAAAUUUAGAUAAUCAAACUUAU---------AAGAUUAUCCUCCUUAGUUUUAUUUAAGAAUGCUUACUCCUUUACUUAUUCUUAAUUUUAAAUAAACUUUUUAUUUCUAGUAGCUUGAAAAC--UGUCG-----------------------ACUCUAUUAAU----UUUUUUUAUUUGGAU-CGGGGUUCGAUUCCCCG-CACCUCCACCA Mycpl_hyop1 Mycpl_hyop2 GGGGGUG-----UUUUGGU--UUUGACAAUUAAAAAA-----AAUUUCUAAGAUGCA-GU--GGUU---UGGUA-------GACCAUAA------------UACCGA--AAUAAUCAAAACGCAAAAAAUUCAAAA---AAAUCUCCAAACGAAGCAAAAAUUGAUUACCCAUUUUUAUCAUAUAACCAAUUAAAUUUUGCAUACGUUUAA------------------------------------------------------------------------------------------------------------------------------UCAAUUUAUUAUAAUAUAUCCUUAAAAAUUUAAAUUUUAUCAUGUAUACGGGCCUCCCAUUUCUGUAACUUGAAAAAUAUUUAAAUUUAGAUAAUCAAACUUAUCAAACUUAUAAGAUUAUCCUCCUUUCAAUUUAUUAUAAUAUAUCCUUAAAAAUUUAAAUUUUAUCAUGUAUACGGGCCUCCCAUUUCUGUAACUUGAAAAC--UGUCG-----------------------ACUCUAUUAAU----UUUUUUUAUUUGGAU-CGGGGUUCGAUUCCCCG-CACCUCCACCA Mycpl_hyop2 Mycpl_galli GGGGAUG-----UCAAGGC--UUCGACAUGAUUGAU------AAACUUAUUAGUUCA-GU--AGGG---UCUGC-------CCUUUAUA-----------GCUCAAGG--UAAUAAUAACCGACAAAACUUCUAAA---------GAACUAGCUGACGAAAACUUUGUUUUAAAUCAGUUAGCAUCAAACAACUACGCUUUAAACUUCUAA-----------------AUAAAUAAUAAAUAGCGUA-CUAGGUUUUUUAAAAACCUAGAUUUAUAGGAU--------------------------AAAACUAGAUUUUGUAA--CUC--------------------------------------------------------------GUUUUUA------GUUUUACUAUUAAUACUGAU-----UAAUUAGUUUUUUGA-CCCAACG-------AUUACUA---------CGAACCAAGAUGUUGAUACUUAUCA-CUUGGUUUG---AGCUUCA----------UAAGUAUCUAAAC--UGUAA-------------------AUAAAACUAAUUUGC---UGAGUCGAUUGUGGAA-ACGGGUUCGAUUCCCGU-CAUCUCCACCA Mycpl_galli Phtpl_aste1 GGGGAUG-----UUUUGGA--UUUGCCAGGUAACGA--------AAUUUAUAUAGCAUAU--CUUG---GUUACG------CAAGUAAAAA-----------CGUCGAGGUUAUAAUAACCGGAAAUAACAAACAAACUGUAACAAAUACACAAGAUUUUGCUGGACAAACUCCAGUUUAUCAAAUGAAUUUUGCAAACAGUUUUUCUUCACAAUUAGCUUUUGCUUAA-----AUAAAUAAGCAAAAA----------------------CCGCACUUAAAUUA--------------------ACUUACGAUUUAAGGAAGG-CAAUAAG-----------------------------------------------------------GUAAGU-----UUUGCUAAUUGGGUUU--------GUCUUUGCUCUUUUAGCAAAUAUCAA-----AAAGACUA-------GUAAUUUAUGGAUUUUGUUUGUUUUUUCAUAAAUUGC---GAACUUAC--------AAAAUAAACUAAAU-AUGUAG-----------------------AAUAUAUAAAU---UAAAGUGAUUUUGUAC-AUGGGUUCGACUCCCAU-CAUCUCCACCA Phtpl_aste1 Phtpl_aste2 GGGGAUG-----UUUUGGA--UUUGCCAAGGUCAAC------GAAAUUUAUAUAGCAUAU--CUUG---GUUAUG------CAAGUAAAAA-----------CGUCGAGGUUAUAAUAACCGGAAAUAAAAAACAAACUGCAACAAAUACACAAGAUUUUGCUGGACAAACUCCAGUUUAUCAAAUGAAUUUUGUAAACAGUUUUUCUUCACAAUUAGCUUUUGCUUAA-----AUAAAUAAGCAGAAC----------------------CCGCACUUAAAUUA--------------------ACUUACGAUUUAAGGAAGG-AAAUAAG-----------------------------------------------------------GUAAGU-----UUUGCUAUUUGAGUUU--------GUCUUUGCUCUUUUAAGCAAAUAUCAA----AAAGACUA-------GUAAUUUAUGGAUUUUGUUUGUUUUUUCAUAAAUUGC---AAAACCAC--------AAAAUAAACUAAAU-AUGUAG-----------------------AAUAUAUAAAU---UAAAGUGAUUUUGCAC-AUGGGUUCGACUCCCAU-CAUCUCCACCA Phtpl_aste2 FIRMICUTES: Bacillales Paeni_larva GGGGGCG----UUUUUGGA--UUCGACGGGGAUAGUUC----GA-GCAUGGGUAGCGGGU--AGUGG--GGACGCGU--CCGCUUUAUCA---------ACG-CUAACGCCAAAUUUAAACGGCAAACAACAAAAC------------------------------------------------------AACUACGCUUUAGCAGCUUAA------------------UAACCUGCUUGCGU----------------------------GCUCCUGCUUUGCAUC------------------GCCCAUGUGCCAAGUU-AGGGGCUCAACUUUA-----------------------------------------------------GUGGGCUAC--GCUGUCUAGUCUCC------------GCCUGAGGCUAG--CUGAAGAAGACAA---UCAGGC-UG----ACCUGUGAGAA--AGCCG-GUUACGGGGCGGGCUUACAGGU---GACAUUAAAA------CCGUGACUACACC-CGUAG-----------------------AAGCCUAUGUG----GCGUUAUCUUUGGAC-ACGGGUUCGACUCCCGU-CGCCUCCAuau Paeni_larva Paeni_macer NNNNNNN-----NNNNNNN--NNNNNNAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU--CGAGG--GGAUCGG---CCUCGUUAAAA----------CG-UC---AAAGCCUAUAACUGGCAAACAACAAAAC------------------------------------------------------AACUUCGCUUUAGCUGCUUAA------------------UAGCGCUUAGCG------------------------------GUUCCUCCCUCCAUU-------------------GCCCAUGUGGUAGGGUAAGGGACUCACUUUAA-----------------------------------------------------GUGGGCUAC---GCCGGAUUCCACC------------GUCUGAGGAAGA--AGGAAGAGAACAA---CCAGAC-UA----GCUCAUCGGA---CGCCC-GUCAGCAGGCAGAAGAAUGAGC---GAAUCGCGAAUA----UGUUGACUACACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUGUUUCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Paeni_macer Bacil_anthr GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU--CGAGG--GGAUCGG---CCUCGUUAAAA----------CG-UC---AAAGCCUAUAAUUGGCAAACAAAACAAU---------------------------------------------------------CUUUCUUUAGCUGCUUAA------------------UUGCACUAAAG-------------------------------GUUCCUCCCUCCAUC-------------------GUCCAUGUGGUAGGGUAAGGGACUCAAACUAA-----------------------------------------------------GUGGACUAC---GCCGGAGUUCGCC------------GUCUGAGGACAA--AGGAAGAGAACAA---CCAGAC-UA----GCAACUUGGA---AGCCU-GUCGAUAGGCCGAAGAGUUCGC---GAAAUGCUAAUA----UAUCGACUACACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_anthr Bacil_thur1 NNNNNNN-----NNNNNNN--NNNNNNAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU--CGAGG--GGAUCGG---CCUCGUUAAAA----------CG-UC---AAAGCCUAUAAUUGGCAAACAAAACAAU---------------------------------------------------------CUUUCUUUAGCUGCUUAA------------------UUGCACUAAAG-------------------------------GUUCCUCCCUCCAUC-------------------GUCCAUGUGGUAGGGUAAGGGACUCAAACUAA-----------------------------------------------------GUGGACUAC---GCCGGAGUUCGCC------------GUCUGAGGACAA--AGGAAGAGAACAA---CCAGAC-UA----GCAACUUGGA---AGCCU-GUCGAUAGGCCGAAGAGUUCGC---GAAAUGCUAAUA----UAUCGACUACACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Bacil_thur1 Bacil_thur2 GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU--CGAGG--GGAUCGG---CCUCGUUAAAA----------CG-UC---AAAGCCUAUAAUUGGCAAACAAAACAAU---------------------------------------------------------CUUUCUUUAGCUGCUUAA------------------UUGCACUAAAG-------------------------------GUUCCUCCCUCCAUC-------------------GUCCAUGUGGUAGGGUAAGGGACUCAAACUAA-----------------------------------------------------GUGGACUAC---GCCGGAGUUCGCC------------GUCUGAGGACAA--AGGAAGAGAACAA---CCAGAC-UA----GCAACUUGGA---AGCCU-GUCGAUAGGCCGAAGAGUUCGC---GAAACGCUAAUA----UAUCGACUACACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_thur2 Bacil_cere1 GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU--CGAGG--GGAUCGG---CCUCGUUAAAA----------CG-UC---AAAGCCUAUAAUUGGCAAACAAAACAAU---------------------------------------------------------CUUUCUUUAGCUGCUUAA------------------UUGCACUAAAG-------------------------------GUUCCUCCCUCCAUC-------------------GUCCAUGUGGUAGGGUAAGGGACUCAAACUAA-----------------------------------------------------GUGGACUAC---GCCGGAGUUCGCC------------GUCUGAGGACAA--AGGAAGAGAACAA---CCAGAC-UA----GCAACUUGGA---AGCCU-GUCGAUAGGCCGAAGAGUUCGC---GAAAUGCUAAUA----UAUCGACUACACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_cere1 Bacil_cere2 GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU--CGAGG--GGAUCGG---CCUCGUUAAAA----------CG-UC---AAAGCCUAUAAUUGGCAAACAAAACAAU---------------------------------------------------------CUUUCUUUAGCUGCUUAA------------------UUGCACUAAAG-------------------------------GUUCCUCCCUCCAUC-------------------GUCCAUGUGGUAGGGUAAGGGACUCAAACUAA-----------------------------------------------------GUGGACUAC---GCCGGAGUUCGCC------------GUCUGAGGACAA--AGGAAGAGAACAA---CCAGAC-UA----GCAACUUGGA---AGCCU-GUCGAUAGGCUGAAGAGUUUGC---GAAAUGCUAAUA----UAUCGACUACACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_cere2 Bacil_cere3 GGGGACG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUAGGUUGCGAGU--CGAGG--GGAUCGG---CCUCGUUAAAA----------CG-UC---AAAGCCUAUAAUUGGCAAACAAAACAAU---------------------------------------------------------CUUUCUUUAGCUGCUUAA------------------UUGCACUAAAG-------------------------------GUUCCUCCCUCCAUC-------------------GUCCAUGUGGUAGGGUAAGGGACUCAAACUAA-----------------------------------------------------GUGGACUAC---GCCGGAGUUCGCC------------GUCUGAGGACAA--AGGAAGAGAACAA---CCAGAC-UA----GCAACUUGGA---AGCCU-GUCGAUAGGCCGAAGAGUUCGC---GAAACGCUAAUA----UAUCGACUACACU-CGUAG-----------------------AAGCUUAAGUG----CCGAUAUUUUUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCACCA Bacil_cere3 Bacil_megat NNNNNNN-----NNNNNNN--NNNNNNAGGG-UAGUUC----GA-GCUUAGGUUGCGAGU--CGAGG--AGAUGG----CCUCGUUAAAA-----------CAUCAACGCCAAUAAUAACUGGCAAAUCUAACAAU------------------------------------------------------AACUUCGCUUUAGCUGCAUAA------------------UAGUAGCUUAGC------------------------------GUUCCUCCCUCCAUC-------------------GCCCAUGUGGUAGGGUAAGGGACUCACUUUAA-----------------------------------------------------GUGGGCUAC---GCCGGAGUUCGCC------------GUCUGAGGACGA--AGGAAGAGAAUAA---UCAGAC-UA----GCGACUGGGA---CGCCU-GUUGGUAGGCAGAACAGCUCGC---GAAUGAUCAAUA----UGCCAACUACACU-CGUAG-----------------------ACGCUUAAGUG----GCCAUAUUUCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Bacil_megat Bacil_halod GGGGACG-----UUCUGGA--UUCGACAGGAAUAGGUC----GA-GCUUAAGUGGCGAGC--CGAGG--UGGCGA----ACUCGUUAAAA-----------CGCCA---UCGCCAAUAACUGGCAAAGAAAACAAC------------------------------------------------------AACUUCGCAUUAGCUGCCUAA------------------GCUAGCAAAUGCG-----------------------------GUUCCGCCCUCCAUC-------------------GCCCAUGUGGUAGGUGUCGGGACUCACUUUUA-----------------------------------------------------GUGGGCUAC---GCCUCUCACCCUCC-----------GUCUGUGGGUGA--AGGAAGAGAUUUA---UCAGAC-UA----GCCUUACGGA---AGCCU-GUCGCUGGGCUGAAGUAACGGC---GAAAUGCGAAUA----CAGUGACUACGCU-CGUAG-----------------------AAGCUUAAGUA---CUCGUUAUUUCUGGAC-GUGGGUUCGAUUCCCAC-CGUCUCCAuuu Bacil_halod Bacil_claus GGGGACG-----UUUUGGA--UUCGACAGGGAUAGGUC----GA-GCUUGCGUUGCGAGC--CGAGG--GGUCGG----CCUCGUAAAAA-----------CGCAC---AAGCCAAUAACUGGCAAAGAAAACAAC------------------------------------------------------AACUUCGCUCUAGCUGCAUAA-----------------------GCUAAGCG-----------------------------GUCUCUCCUCUCCAUC------------------GCCCAUGUGGAGUGG-CUGAGACUCAACUUUA-----------------------------------------------------GUGGGAUAC---GCCUUUCUCCCCCC-----------GCCUGAGGGAGA--AGGAAGAGACUAA---UCAGGC-UA----GCUGCACGGA---GGCCU-GUCUUUGGGCUGAAGUGCUAGC---GAAAUACGAAUA----CAAAGACUACGCU-CGUAG-----------------------AAGCGUAAGUG----UCGUUAUCUCUGGAC-GUGGGUUCAAUUCCCAC-CGUCUCCAuau Bacil_claus Bacil_subti GGGGACG-----UUACGGA--UUCGACAGGGAUGGAUC----GA-GCUUGAGCUGCGAGC--CGAGA---GGCGA----UCUCGUAAACA-----------CGCA---CUUAAAUAUAACUGGCAAAACUAACAGU---------------------------------------------UUUAACCAAAACGUAGCAUUAGCUGCCUAA------------------UA--AGCGCAGCGA----------------------------GCUCUUCCUGACAUU-------------------GCCUAUGUGUC--UGUGAAGAGCACAUCCAA------------------------------------------------------GUAGGCUAC---GCUUGCGUUC-CC------------GUCUGAGAACG--UAAGAAGAGAUGAA----CAGAC-UA----GCUCUCGGAA---GGCCC-GCCCGCAGGCAAGAAGAUGAGU---GAAACCAUAAAUA---UGCAGGCUACGCU-CGUAG-----------------------ACGCUUAAGUA---AUCGAUGUUUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuac Bacil_subti Bacil_liche GGGGACG-----UUACGGA--UUCGACAGGGACGGAUC----GA-GCUUGAGCUGCGAGC--CGAGA---GGCGA----UCUCGUAAAAA-----------CGCA---CCUAAAUAUAACUGGCAAAUCUAACCAG------------------------------------------------------AACUUAGCACUAGCUGCCUAA------------------UU--AGCGCAGCGA----------------------------GCUCUUGCCCGCAUC-------------------GCCUAUGUGCC--GGUUAAGAGCCCAUAACGAA----------------------------------------------------GUAGGCUAC---GCUUGCGCCC-CC------------GUCUGAGGGCG--CAGGAAGAGACUCA---UCAGAC-UA----GCUCUCCUAG---GGCCC-GCCCGCAGGCACGAAGAUGAGC---GAAACUAAAUAU----GCAGGGCUACGCU-CGUAG-----------------------ACGCUGAAGCA---AUCGACGUUUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAucu Bacil_liche Geobl_stear GGGGACG-----AUCCGGA--UUCGACAGGGGUAGGUC----GA-GCUUAAGCGGCGAGC--CGAGG-GGGACGU----CCUCGUAAAA-----------ACGUC--ACCUAAAGAUAACUGGCAAACAAAAC------------------------------------------------------------UACGCUUUAGCUGCCUAA------------------UUG--CUGCAGCUA----------------------------GCUCCUCCCGCCAUC-------------------GCCCGCGUGGCGU-UCGAGGGGCUCAUAUGAA-----------------------------------------------------GCGGGCUAC---GCCCAAAUCCGCC------------GCCUGAGGAUGA--GGGAAGAGAUGAA---CCAGGC-UA----GCCGCCGGGA---GGCCU-GUCGGUAGGCGGAACGGACGGC---GAAGCG-AAAUA----UACCGACUACGCU-CGUAG-----------------------AUGCUUAAGUG----GCGAUGCCUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuuu Geobl_stear Geobl_kaust GGGGACG-----AUCCGGA--UUCGACAGGGGUAGGUC----GA-GCUUAAGCGGCGAGC--CGAGG-GGGACGU----CCUCGUAAAA-----------ACGUC--ACCUAAAGAUAACUGGCAAACAAAAC------------------------------------------------------------UACGCUUUAGCUGCCUAA------------------UUG--CUGCAGCUA----------------------------GCUCCUCCCGCCAUC-------------------GCCCGCGUGGCGU-UCGAGGGGCUCAUAUGAA-----------------------------------------------------GCGGGCUAC---GCCCAAAUCCGCC------------GCCUGAGGAUGA--GGGAAGAGACGAA---CCAGGC-UA----GCCGCCGGGA---GGCCU-GUCGGUAGGCGGAACGGACGGC---GAAGCG-AAAUA----UACCGACUACGCU-CGUAG-----------------------AUGCUUAAGUG----GCGAUGCCUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuuu Geobl_kaust Exiguoba_sp GGGGACG-----UUACGGA--UUCGACGGGGGUAGUUC----GG-UCUUCUGUGGCGUGU--CGAGG--GGUCGG----CCUCGUUAAAA----------CGCAUC-----AGCCAUAACUGGCAAAACUAAC---------------------------------------------------------ACACAACUCGCAGCAGCUUAA------------------UAGCUACUACG-------------------------------GAUCCUAGCAGCCGUC------------------GCCUGGUCGGCUGAUUUCUAGGGUCUCACUUUAA---------------------------------------------------ACAGGCUAC---GCUUGGACCCUUCC-----------GUCUGGAGGGAAA-GAGAAGAGAUGGAA--UCAGAC-UG----GUCGGACGGA---CGCCU-GUCAAUUGGCAGCCUGA-CGAC---GAGAUCCCAAUA----AAUUGACUACACA-CGUAG-----------------------AAGCUUAAGUA---UACGAUGCCUUCGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuac Exiguoba_sp Ocebl_iheyi GGGGACG-----UUACGGA--UUCGACAGGGAUAGAUU----GA-GCUCAGGUUGCACGU--CGAGG---UUACG----GCUCGUAAAA-----------CGUU-AUGCCUAAAUAUAACUGGCAAAGAAACUAAU---------------------------------------------------CAACCUGUUUUAGCAGCUGCGUAA------------------GUAGCCUAAAAC------------------------------GAUCCUUCCUGGCAUC------------------GCCCGUGUGGCAGAUUGAAGGGUCUCAAAUUAA----------------------------------------------------GCGGGCUAU---GCUACGAUCCUCC------------GCCUGGGGAUUUG-UAGAUGAAUCUAA---UCAGGC-UA----GCUCCAUGAA---AGCCU-GUUGGUAGGCCAACAUGAGAGC---GAAUGAUAAUA-----UACCAACUACGCG-UGUAG-----------------------AAGCCUGAGUG----GCGAUAUCCUUGGAC-GAGGGUUCGACUCCCUC-CGUCUCCACCA Ocebl_iheyi Stapc_sapro NNNNNNN----NNNNNNNN--NNNNNNNNNGGUUCCAU----GA-GCUAGUUAAGCGUGU--CGAAG--GGUUGU----CUUCGUCACCAACACA----CACAGUU------AUAAUAACUGGCAAAGAAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCGUAA------------------UA-GCACUCUGC------------------------------AUCGCCUAACGGUAUC------------------UCCUAUGUACCGUUAACGCGAUUCAACCUAUA-----------------------------------------------------GUAGGAUAC---GCUAGGCACUGCC------------GUUUGAAGUCUGCCUAGAAGAGA-UUAA--UCAAAC-UA----GCAUAAUGA----CGGAU-GUCUAUCACCUCCCAUUA-UGC---GAAACCUAUU------GAUAGACUACGCA-CGUAG-----------------------AAGUGCUAGUA----UCAGAACCUCUGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Stapc_sapro Stapc_xylos NNNNNNN----NNNNNNNN--NNNNNNNNNGGUUCCAU----GA-GCUAGUUAAGCGUGU--CGGAG--GGUUGU----CUUCGUCACCAACACA----CACAGUU------AUAAUAACUGGCAAAGAAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCGUAA------------------UA-GCACUCUGC------------------------------AUCGCCUAACGGUAUC------------------UCCUAUGUACCGUUAACGCGAUUCAACCUAUA-----------------------------------------------------GUAGGAUAC---GCUAGGCACUGCC------------GUUUGAAGUCUGCCUAGAAGAGA-UUAA--UCAAAC-UA----GCAUAAUGA----CGGAU-GUCUAUCACCUCCCAUUA-UGC---GAAACCUAUU------GAUAGACUACGCA-CGUAG-----------------------AAGUGCUAGUA----UCAGAACCUCUGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Stapc_xylos Stapc_aure1 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU--CGGAG--GGUUGU----CUUCGUCAUCAACACA----CACAGUU-----UAUAAUAACUGGCAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCCUAA------------------UC-GCACUCUGC------------------------------AUCGCCUAACAGCAUU------------------UCCUAUGUGCUGUUAACGCGAUUCAACCUUA------------------------------------------------------AUAGGAUAU---GCUAAACACUGCC------------GUUUGAAGUCUGUUUAGAAGAAACUUAA--UCAAAC-UA----GCAUCAUGU----UGGUU-GUUUAUCACUUUUCAUGA-UGC---GAAACCUAUC------GAUAAACUACACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUUUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure1 Stapc_aure2 GGGGACG----UUUCUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU--CGGAG--GGUUGU----CUUCGUCAUCAACACA----CACAGUU-----UAUAAUAACUGGCAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCCUAA------------------UC-GCACUCUGC------------------------------AUCGCCUAACAGCAUU------------------UCCUAUGUGCUGUUAACGCGAUUCAACCUUA------------------------------------------------------AUAGGAUAU---GCUAAACACUGCC------------GUUUGAAGUCUGUUUAGAAGAAACUUAA--UCAAGC-UA----GCAUCAUGU----UGGUU-GUUUAUCACUUUUCAUGA-UGC---GAAACUUUUC------GAUAAACUACACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure2 Stapc_aure3 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU--CGGAG--GGUUGU----CUUCGUCAUCAACACA----CACAGUU-----UAUAAUAACUGGCAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCCUAA------------------UC-GCACUCUGC------------------------------AUCGCCUAACAGCAUU------------------UCCUAUAUGCUGUUAACGCGAUUCAACCUUA------------------------------------------------------AUAGGAUAU---GCUAAACACUGCC------------GUUUGAAGUCUGUUUAGAAGAAACUUAA--UCAAGC-UA----GCAUCAUGU----UGGUU-GUUUAUCACUUUUCAUGA-UGC---GAAACCUUUC------GAUAAACUACACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure3 Stapc_aure4 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU--CGGAG--GGUUGG----CUUCGUCAUCAACACA----CACAGUU-----UAUAAUAACUGGCAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCCUAA------------------UC-GCACUCUGC------------------------------AUCGCCUAACAGCAUU------------------UCCUAUGUGCUGUUAACGCGAUUCAACCUUA------------------------------------------------------AUAGGAUAU---GCUAAACACUGCC------------GUUUGAAGUCUGUUUAGAAGAAACUUAA--UCAAGC-UA----GCAUCAUGU----UGGUU-GUUUAUCACUUUUCAUGA-UGC---GAAACCUUUC------GAUAAACUACACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuua Stapc_aure4 Stapc_aure5 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU--CGGAG--GGUUGU----CUUCGUCAUCAACACA----CACAGUU-----UAUAAUAACUGGCAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCCUAA------------------UC-GCACUCUGC------------------------------AUCGCCUAACAGCAUU------------------UCCUAUAUGCUGUUAACGCGAUUCAACCUUA------------------------------------------------------AUAGGAUAU---GCUAAACACUGCC------------GUUUGAAGUCUGUUUAGAAGAAACUUAA--UCAAGC-UA----GCAUCAUGU----UGGUU-GUUUAUCACUUUUCAUGA-UGC---GAAACCUUUC------GAUAAACUACACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuua Stapc_aure5 Stapc_aure6 GGGGACG----UUCAUGGA--UUCGACAGGGGUCCCCC----GA-GCUCAUUAAGCGUGU--CGGAG--GGUUGG----CUUCGUCAUCAACACA----CACAGUU-----UAUAAUAACUGGCAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCCUAA------------------UC-GCACUCUGC------------------------------AUCGCCUAACAGCAUU------------------UCCUAUGUGCUGUUAACGCGAUUCAACCUUA------------------------------------------------------AUAGGAUAU---GCUAAACACUGCC------------GUUUGAAGUCUGUUUAGAAGAAACUUAA--UCAAGC-UA----GCAUCAUGU----UGGUU-GUUUAUCACUUUUCAUGA-UGC---GAAACCUUUC------GAUAAACUACACA-CGUAG-----------------------AAAGAUGUGUA----UCAGGACCUCUGGAC-GCGGGUUCAAAUCCCGC-CGUCUCCAuau Stapc_aure6 Stapc_epid1 GGGGACG----UUCUUGGA--UUCGACAGGGGUCCCC-----GA-GCUUAUUAAGCGUGU--CGGAG--GGUUGG----CUCCGUCAUCAACACA---UUUCGGUU-----AAAUAUAACUGACAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCGUAA------------------UA-GCCA-CUGC------------------------------AUCGCCUAACAGCAUC------------------UCCUACGUGCUGUUAACGCCAUUCAACCCAA------------------------------------------------------GUAGGAUAU---GCUAAACACUGCC------------GCUUGAAGUCUGUUUAGAUGAAAUAUAA--UCAAGC-UA----GUAUCAUGU----UGGUU-GUUUAUUGCUUAGCAUGA-UGC---GAAAAUUAUC------AAUAAACUACACA-CGUAG-----------------------AAAGAUUUGUA----UCAGGACCUCUGGAC-GCGGGUUCGAAUCCCGC-CGUCUCCAuua Stapc_epid1 Stapc_epid2 GGGGACG----UUCUUGGA--UUCGACAGGGGUCCCCC----GA-GCUUAUUAAGCGUGU--CGGAG--GGUUGG----CUCCGUCAUCAACACA---UUUCGGUU-----AAAUAUAACUGACAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCGUAA------------------UA-GCCA-CUGC------------------------------AUCGCCUAACAGCAUC------------------UCCUACGUGCUGUUAACGCGAUUCAACCCUA------------------------------------------------------GUAGGAUAU---GCUAAACACUGCC------------GCUUGAAGUCUGUUUAGAUGAAAUAUAA--UCAAGC-UA----GUAUCAUGU----UGGUU-GUUUAUUGCUUAGCAUGA-UGC---GAAAAUUAUC------AAUAAACUACACA-CGUAG-----------------------AAAGAUUUGUA----UCAGGACCUCUGGAC-GCGGGUUCGAAUCCCGC-CGUCUCCAuua Stapc_epid2 Stapc_epid3 GGGGACG----UUCUUGGA--UUCGACAGGGGUCCCC-----GA-GCUUAUUAAGCGUGU--CGGAG--GGUUGG----CUCCGUCAUCAACACA---UUUCGGUU-----AAAUAUAACUGACAAAUCAAACAAU------------------------------------------------------AAUUUCGCAGUAGCUGCGUAA------------------UA-GCCA-CUGC------------------------------AUCGCCUAACAGCAUC------------------UCCUACGUGCUGUUAACGCGAUUCAACCCUA------------------------------------------------------GUAGGAUAU---GCUAAACACUGCC------------GCUUGAAGUCUGUUUAGAUGAAAUAUAA--UCAAGC-UA----GUAUCAUGU----UGGUU-GUUUAUUGCUUAGCAUGA-UGC---GAAAAUUAUC------AAUAAACUACACA-CGUAG-----------------------AAAGAUUUGUA----UCAGGACCUCUGGAC-GCGGGUUCGAAUCCCGC-CGUCUCCAuua Stapc_epid3 Lista_mono1 GGGGAUG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUCUAA-----------------------------------------------------GUGGGCUAC---ACUAGUUAAUCUCC-----------GUCUGGGGUUAAA-UAGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACCGGGCCGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGAC-GUGGGUUCGACUCCCAC-CAUCUCCAuau Lista_mono1 Lista_mono2 GGGGAUG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUCUAA-----------------------------------------------------GUGGGCUAC---ACUAGUUAAUCUCC-----------GUCUGGGGUUAAA-UAGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACUGGGCCGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGAC-GUGGGUUCGACUCCCAC-CAUCUCCAuau Lista_mono2 Lista_mono3 NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUCUAA-----------------------------------------------------GUGGGCUAC---ACUAGUUAAUCUCC-----------GUCUGGGGUUAAA-UAGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACCGGGCCGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_mono3 Lista_inno1 NNNNNNN-----NNNNNNN--NNNNNNNNNGAUAGUUC----GA-GCUUGAUUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUCUAA-----------------------------------------------------GUGGGCUAC---ACUAGUUAAUCUCC-----------GUCUGAGGUUAAA-UAGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACCGGGCUGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUCAAGUG----CCGAUAUUUCUGGAC-GUNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_inno1 Lista_inno2 GGGGAUG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUCUAA-----------------------------------------------------GUGGGCUAC---ACUAGUUAAUCUCC-----------GUCUGAGGUUAAA-UAGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACCGGGCUGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUCAAGUG----CCGAUAUUUCUGGAC-GUGGGUUCGACUCCCAC-CAUCUCCAuau Lista_inno2 Lista_inno3 GGGGAUG-----UUACGGA--UUCGACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUCUAA-----------------------------------------------------GUGGGCUAC---ACUAGUUAAUCUCC-----------GUCUGGGGUUAAA-UAGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACUGGGCCGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGAC-GUGGGUUCGACUCCCAC-CAUCUCCAuau Lista_inno3 Lista_welsh NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUCUAA-----------------------------------------------------GUGGGCUAC---ACUGGCUAAUCUCC-----------GUCUGAGGUUAGU-UGGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACCGGGCCGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_welsh Lista_seeli NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGAAAGGGUCUCACUUUAA-----------------------------------------------------GUGGGCUAC---ACUAAAUAAUCUCC-----------GUCUGGGGUUAGU-UAGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACCGGGCUGAUGUUUAUGC---GAAAUACUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUUAAGUG----CCCAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_seeli Lista_gray1 NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUCUAA-----------------------------------------------------GUGGGCUAC---ACUAGUUAAUCUCC-----------GUCUGAGGUUAAA-UAGAAGAGCUUAA---UGAGAC-UA----GCUGAAUGGA---AGCCU-GUUACCGGGCUGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUCAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_gray1 Lista_gray2 NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGGUC----GA-GCUUGAGUUGCGAGC--CGGGG--GGAUCGG----CCCGUCAUCA---------ACGUC-AAAGCCAAUAAUAACUGGCAAACAAAACAAC------------------------------------------------------AAUUUAGCUUUCGCUGCCUAA------------------UAGCAGUCUGAAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------ACCCAUGUGCUACGGUAAGGGUCUCACUUUUAA----------------------------------------------------GUGGGUUAC---GCUGGCUUAUCUCC-----------GUCUGGGGCAAAC-GAGAAGAGCAUAA---UCAGAC-UA----GCUAGAUAGA---GCCCU-GACGCCGGGCAGACAUCUAUGC---GAAAUCCAAAUA----CGGCAACUACGCU-CGUAG-----------------------AUGCUCAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_gray2 Lista_ivano NNNNNNN-----NNNNNNN--NNNNACAGGGAUAGUUC----GA-GCUUGAGUUGCGAGU--CGGGG--GGAUCGU---CCUCGUUAUUA---------ACGUC-AAAGCCAAUAAUAACUGGCAAAGAAAAACAA------------------------------------------------------AACCUAGCUUUCGCUGCCUAA------------------UAAGCAGUAGCAUAGCU-------------------------GAUCCUCCGUGCAUC-------------------GCCCAUGUGCUACGGUAAGGGUCUCACUUUAA-----------------------------------------------------GUGGGCUAC---ACUAAAUAAUCUCC-----------GUCUGGGGUUAGU-UAGAAGAGCUUAA---UCAGAC-UA----GCUGAAUGGA---AGCCU-GUUACCGGGCUGAUGUUUAUGC---GAAAUGCUAAUA----CGGUGACUACGCU-CGUAG-----------------------AUAUUUAAGUG----CCGAUAUUUCUGGNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lista_ivano FIRMICUTES: Lactobacillales Lacbl_gasse GGGGAUG----UUUUGGGA--UUCGACAGGCGUAGAUU----CG-CGUUGA-CUGCGAUU--CGUAG--GUCACGU---CUACGUUAAA----------ACGUCACAGUUAAAUUAUAACUGCAAAUAACGAAAAU------------------------------------------------------UCUUACGCAGUAGCUGCUUAG-----------------------UCAGGCUGCGU--------------------------GAUCCAAUGACGGAUU------------------GCUCGUGUCUGUCUGCGGGUCUUACCAUUUA------------------------------------------------------ACGAGCUAC---GUUUAACUACUU-------------ACCUUA--AUAGUUAGAAAUAAGAUUCU---UAGGU-UA----GUUUUGAUAGUUUAGCCCUGUUAUAUGGCGUUUUAUCAAAGC--GAAGUUUAAGUA----AUAUAACUAUGAU-CGUAG-----------------------AGGUUAACGAC----GGAAUACGUUUGGAC-AGGGGUUCAAUUCCCCU-CAUCUCCAuaa Lacbl_gasse Lacbl_johns GGGGAUG----UUUUGGGA--UUCGACAGGCGUAGAUU----CG-CGUUGA-CUGCGAUU--CGUAG--GUCACGU---CUACGUUAAAA---------ACGUCACAGUUAAAUUAUAACUGCAAAUAACGAAAAU------------------------------------------------------UCUUACGCAGUAGCUGCUUAG-----------------------UCAGCCUGCGU--------------------------GAUCCAAAGAUGGAUU------------------GCUCGUGUCUAUCUACGGGUCUUACCAUUUA------------------------------------------------------ACGAGCUAC---GUUUAACUACUU-------------ACCUUA--AUAGUUAGAAAUAAGAUUCU---UAGGU-UA----GUUUUGAUAGUUUAGCCCUGUUAUAUGGCGUUUUAUCAAAGC--GAAUUUUAAGUA----AUAUAACUAUGAU-CGUAG-----------------------AUGUUAACGAC----GAAAUACGUUUGGAC-AGGGGUUCAAUUCCCCU-CAUCUCCAuag Lacbl_johns Lacbl_sakei GGGGCCG-----UUACGGA--UUCGACAUGUGUAGGUG----AG-CGUGAA-UUGCACUU--CGUAG--GUUACGU---CUGCGUUAACA---------ACGUU-ACAGUUAAUUAUAACUGCAAACAAUAACAAU------------------------------------------------------UCUUACGCUGUAGCUGCCUAA------------------ACACCAGCAUAGCGU---------------------------GAUCCGUCUGACUUC-------------------ACCCAAGGGUUAGAUCCGGGUCUCAAAUUAA------------------------------------------------------UUGGGUUAC---GUUAAAUGCCGCC------------GUUUGA--AGUGUUUAAAAGAGAUUU----UCAAGC-UA---GUUAGUCCAUCCGAGCCUCUGUUGAACGGCGUUUUGGGCUAGC--GAAUUUCUAAAUA---GUUCGACUAUGAG-UGUAG-----------------------AGAUUGACGUG----GCAAUGCGCAUGGAC-GCGGGUUCAACCCCCGC-CGGCUCCAuug Lacbl_sakei Lacbl_delb1 NNNNNNN----NNNNNNNN--NNNNNNAAGCACAGUUCG---AG-CUUGAA-UUGCGUUU--CGUAG--GUUACGU---CUACGUUAAA----------ACGUU-ACAGUUAAAUAUAACUGCUAAAAACGAAAAC---------------------------------------------------AACUCUUACGCUUUAGCUGCCUAA------------------AAACAGUUAGCGUA----------------------------GAUCCUCUCGGCAUCG------------------CCCAUGUGCUCGAGUAAGGGUCUCAAAUUUA------------------------------------------------------GUGGGAUAC---GUUAAACUUUUCC------------GUCUGU--AAAGUUUAAAAGAGAUCAU----CAGAC-UA----GCGAUACAGAA--UGCC-UGUCACUCGGCAAG-CUGUAAAGC--GAAACCUCAAAU---GAGUUGACUAUGAA-CGUAG-----------------------AUUUUUAAGUG----UCGAUGUGUUUNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Lacbl_delb1 Lacbl_delb2 GGGGAUG----UUUUGGGA--UUCGACAGGCGCAGACC----CG-CGCUGG-UUGCGAUU--CGUAG--GUUACGU---CUACGUUAAA---------ACGUUAAACAGUUUAAAUUAACUGCAAACGAAAACUCA---------------------------------------------------------UACGCUGUAGCUGCUUAG------------------UUCAGCCCAGC-------------------------------UGCCAAUAGACUGCCU------------------GCCCGUGGCGGUCUUGCGGUAUCAACAUU--------------------------------------------------------ACGGGAUAC---GCUUGCCUAUCAC------------ACCUGA--AUAAGCGAGAAGAGACUAA----CAGGU-UA----GCCGUGGCUGUUUGGCCCUGUCAUAUGGCGUUUUGCCCCGGU--GAAGUUUAAAUA----AUAUGACUAUGAU-CGUAG-----------------------AGAUUAGUGAC----GGGAUGCGUUUGGAC-AGGGGUUCAAUUCCCCU-CAUCUCCAucu Lacbl_delb2 Lacbl_casei GGGGGUG-----UAAUGGU--CUCGACAUUGCUUUUCG----CA-CAUGCA-GUGCACCU--CGGAG--GC-UCGG---CUCCGUCAUC----------AACGG-AACAGUUAAUAUAACUGCAAAGAACGAAAAU------------------------------------------------------UCUUACGCUUUAGCUGCUUAA------------------UAACCAGCUAGCGU----------------------------GAUCCUUCCGACUUC-------------------GCUCAAGGGUCGGGUCUGGGUCUCAAAUUA-------------------------------------------------------UUGAGCUAC---GGUUAAUGUUGCC------------ACCUGA--GGCAUUAACAAGAGACUAG----UAGGU-UA----GCUGCGUUGUGUUAGCCUUGCUGGCUGGCGCGACAUCGCGGC--GAAUUUUAAAUA----AGUCAGCUAUAGG-UGUAG-----------------------AGCUGCAUGUA----GCAGGGGUGAUGGAC-AGGAGUUCGAUUCUCCU-CACCUCCAuua Lacbl_casei Lactb_aciph GGGGAUG----UUUUGGGA--UUCGACAGGCGUAGACC----CG-CAUUGA-CUGCGAUU--CGUAG--GUUACGU---CUACGUAAAA----------ACGUU-ACAGUUAAAUAUAACUGCAAAUAACAAAAAU------------------------------------------------------UCUUACGCAUUAGCUGCUUAA------------------UUUAGCGCAUGCGU----------------------------UGCUCUUGACCAGUUU------------------ACUCGUGACUGGUUUUCGAGUAUCAACUUUA------------------------------------------------------GCGAGUUAC---GUUUAACUACCUC------------ACCUGA--AUAGUUAAAAAGAGUCUUAA---CAGGU-UA----GCUGGUUCAUACUAGCCCUGUUAUAUGGCGUUUUGAACUAGU--GAAGUUUAAGUA----AUAUAACUAUGAU-CGUAG-----------------------AGGUUAAUGAC----GAGAUGCGUUUGGAC-AGGGGUUCAAUUCCCCU-CAUCUCCAuag Lactb_aciph Lacbl_helve NNNNNNN----NNNNNNNN--NNNNNNNNNCGUAGAUU----CG-CAUUGA-CUGCGAUU--CGUAG--GUUACGU---CUACGUAAAA----------ACGUU-ACAGUUAAAUAUAACUGCAAAUAACAAAAAU------------------------------------------------------UCUUACGCAUUAGCUGCUUAA------------------UUUAGCGCAUGCGU----------------------------UGCUCUUUGUCGGUUU------------------ACUCGUGGCUGACACUGAGUAUCAACUUUA-------------------------------------------------------GCGAGUUAC---GUUUAACUAUCUC------------ACCUGA--AUAGUUGAAAAGAGUCUUAA---CAGGU-UA----GCUAGCUCAUCCUAGCCCUGUUAUAUGGCGUUUUGAGCUAGU--GAAGUUCAAGUA----AUAUAACUAUGAU-CGUAG-----------------------AGGUCAGUGAC----GGAAUGCGUCUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Lacbl_helve Lacbl_galli NNNNNNN----NNNNNNNN--NNNNNNNNNCGUAGAUU----CG-CAUUGA-NUGCGAUU--CGUAG--GUUACGU---CUACGUAAAA----------ACGUU-ACAGUUAAAUAUAACUGCAAAUAACAAAAAU------------------------------------------------------UCUUACGCAUUAGCUGCUUAA------------------UUUAGCGCAUGCGU----------------------------UGCUCUUUGUCGGUUU------------------ACUCGUGGCUGACACUGAGUAUCAACUUUA-------------------------------------------------------ACGAGUUAC---GUUUAACUACCUC------------ACCUGA--AUAGUUGAAAAGAGUCUUAA---CAGGU-UA----GCUAGCUCAUCCUAGCCCUGUUAUAUGGCGUUUUGGGCUAGU--GAAGUUCAAGUA----AUAUAACUAUGAU-CGUAG-----------------------AGUUCAGUGAC----GGAAUGCGUUUGGAC-ACNNNNNNNNNNNNNNN-NNNNNNNNNNN Lacbl_galli Lacbl_plan1 NNNNNNN----NNNNNNNN--NNNNNNNNNUAUAGUUU----GA-GUUCGA-UUGCGCUU--CGUAU--GUUGCGU---CUACGUAAAA----------ACGCUCAGUUUAAAUUAUAACUGCAAAAAAUAAUAAC---------------------------------------------------AAUUCUUACGCUUUAGCUGCCUAA------------------UAAGCGCUUA-ACGUA--------------------------GAUCCUCCCAGGAUC-------------------GUCCAUGUUCUGGAUCUGGGUCCUAAAUUUA------------------------------------------------------GUGGACUUAC--GCUCAAAGCUUCC------------ACCUG--GAGUUGCGAGAAGAGACUAAU---CAGGU-UA----GUCAUUGCUGGG-UGCCCUGUCAUACGGCGUUU-GCAAUGAU--GAAAUUUAAAUA----GUAUGAAUAUGAG-CGUAG-----------------------AUAUCCGAGGG----GCAAUAUGCUUAGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Lacbl_plan1 Lacbl_plan2 GGGGAUG-----UUCUGGA--UUCGACAGGUAUAGUUU----GA-GUUCGGAUUGCGCUU--CGUAG--GUUGUGU---CUACGUAAAA----------ACGCUCAGUUUAAAUUAUAACUGCAAAAAAUAAUAAC---------------------------------------------------AAUUCUUACGCUUUAGCUGCCUAA------------------UAAGCGCUUA-ACGUA--------------------------GAUCCUCCCAGGAUC-------------------GUCCAUGUUCUGGAUCUGGGUCCUAAAUUUA------------------------------------------------------GUGGACUUAC--GCUCAAAGCUUCC------------ACCUG--GAGUUGCGAGAAGAGACUAAU---CAGGU-UA----GUCAUUGCUGGG-UGCCCUGUCAUACGGCGUUU-GCAAUGAU--GAAAUUUAAAUA----GUAUGAAUAUGAG-CGUAG-----------------------AUAUCCGAGGG----GCAAUAUGCUUGGAC-GCGAGUUCGACUCUCGC-CAUCUCCAuua Lacbl_plan2 Lacbl_brevi GGGGCCG-----UUCUGGA--UUCGACUGGUAUAGGUUG---CG-CCCCAA-CUGCACUC--CGUAG---CGGCAU---CUACGUUAAA----------AGGUC-CAGUUUAAUUAUAACUGCAAAAAAUAAUAAC---------------------------------------------------AAUUCUUACGCUUUAGCUGCUUAA------------------UAGGCGCUUAACGUA---------------------------GAUCCUCCUAGGCUU------------------GUCCGUGGUCUAGAUCUGGGUCCUAAAUUUA-------------------------------------------------------ACGGACUUAC--GCUAACGACUCCC------------ACCUGA-AGUACGUUAGAAGAGAAAAA---UCAGGU-UA----GCUGUUCAUGUG-GGCCCUGACAGGCGGCAAGU-UGGGCAGU--GAAACCUUAAGUA---GUCUGAAUAUGAG-UGUAG-----------------------ACGUUGGGGUG----GCAAUAUGCUAGGAC-GCGGGUUCGAUCCCCGC-CGGCUCCAuau Lacbl_brevi Pedio_pento GGGGUCG-----UUAUGGA--UUCGACAGGUAUGGGUCG---AG-CCAUGA-CUGCAUUU--CGUAG--GUUACGG---CUACGUAAAA----------ACGUU--CAGUUUAUUAUAACUGCAAAAAAUAAUAAC---------------------------------------------------AAUUCUUACGCUUUAGCUGCCUAA-------------------UAGUAGCUUGACGUA--------------------------GAUCCGCCUAGUCUC-------------------GUCCAUGGGCUAGAUACGGGUCCUAAAUGAA------------------------------------------------------GUGGACUUGC--GCUUAAGUACUG-------------GCCUG--GGUGCUUAAGAAGAGGAUUUA---CAGAC-UA----GCGUUUUAAUGA-AGCCCCGACAUACGGCGUCU-UAUUUCGC--GAAAUUUAAGUA----GUAUGAAUAUGAA-UGUAG-----------------------AUGUCAUGGUG----GCGACAUGCUUGGAC-GCGGGUUCGACUCCCGC-CGACUCCAuuu Pedio_pento Leuno_mesen GGGUCUG----UUUUUGGAA-UUCGACAGGUCGUUUA-----GA-GCAUUGAUUGCGUUU--CGCC---AUCCG------GGCGCAAAA------------CGGG-CAG-AAAUUUUAACUGCAAAAAACGAAAAC------------------------------------------------------UCUUUCGCUAUCGCUGCCUAA------------------AAACCAGUGAUGCGUA--------------------------GCUUAAUCUUGGUU--------------------GCUGGCGUCUGAGGUUAGGCCAUAAAAG---------------------------------------------------------GCCAGAU-C---GUACUGCUUCUUAC-----------AUCUGGAAAAGCAGUAUUAAAUCAA-----UCAGGU-UA----GUUAUAUUGAAG-AGCCUUGAGCUAUGGCAGAC-AAUAUAAU--GAACUACAAAUA----AUAGCCCUAUAAA-CGUAG-----------------------AUAUUGGUGUA----UCGGGCGAUUUGGAC-AGGGGUUCGACUCCCCU-CAGAUCCAuuu Leuno_mesen Leuno_lacti NNNNNNN----NNNNNNNN--NNNNNNNNNCUGUUUA-----GG-GCAUGGACUGCGUUU--CGCC---AUCCG------GGCGUUAAAA-----------CGGG-CAG-AAAUUUUAACUGCAAAAAACGAAAAC------------------------------------------------------UCUUUCGCAAUCGCUGCCUAA------------------AAAACAGUGAUGCGUC--------------------------ACUUAAUCUUGGUA--------------------GCUGGCGUCUAAGGUUAGGUCAUAAAAA---------------------------------------------------------GUCAGAU-C---GCGUCGUUGCUUAG-----------AUUCGGAACAGCGGCGUUAAAUGAA-----UCGAGU-UA----GUGAUUGAUGUU-AGCCUCGUGUUGUGGCGGAA-UCAAUCAU--GAAACUUAAAUG----ACAACACUAUAAG-CGUAG-----------------------AGGUUCAUGUA----CCGGGCAGUUUGGAC-ANNNNNNNNNNNNNNNN-NNNNNNNNNNN Leuno_lacti Leuno_pseud NNNNNNN----NNNNNNNN--NNNNNNNNNUCGUUUA-----GA-GCAUUGCCUGCGUUU--CGCC---GUCCG------GGCGUUAAA------------CGGG-CAG-ACAUUUUAACUGCAAAAAACGAAAAC------------------------------------------------------UCUUACGCAAUCGCUGCUUAA------------------AAACCAGCAAUACGUA--------------------------GCUUAAUCUUGGUU--------------------UCUGACGUCUGAGAUUAGGCCAUAAAAG---------------------------------------------------------GUCAGAU-C---GCAUUGUUGUUUAC-----------AUCUGGAAUGGCAAUGUUAAAUUUA-----UCAGAU-UA----GUUAAUUUGAUU-AGCCGUGUGUUAUGGCGUAC-AAAUUGAU--GAAAUUCAAAUG----AUAGCACUAUAAG-CGUAG-----------------------GCGCCAAUGUA----UCGGACGGUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Leuno_pseud Oenoco_oeni GGGGUAG-----UUCCGGAA-UUCGACAGGUUAUUA------CAAGCAUGGAUUGCGUUC--CC----GUUUGUCG------GGUUAAA------------GAC----UGCAGAUAUAACUGCAAAAAAUAAUGAA---------------------------------------------------CCAUCUUACGCAUUAGCUGCCUAA------------------UCGCAGUAGCGUA-----------------------------GCCCUUUGUUGA----------------------GUCCACGGCAACAUUCUCGGCCUAAUUA---------------------------------------------------------GUGGAUUA----GCUGCUGGCAUUUAU---------GUUCGGAAUAAAAGCAGUGAAACAAGAA----UCGAACUA----GCUC-UCGAUU--UGGAA--GUUAGCAACCUAAUCUUGAGC----GAAAUUAC------UUGUUAACUAUGAG-CGUAG-----------------------AUAUUUAUGUG---AUUGGAUAAUUUGGAC-AUGGGUUCGACUCCCAU-CUACUCCAuau Oenoco_oeni Carnb_mltar uagcaca-----auauguu--acauuauuuaugugag-----ca-aguucgauaaaaguu--cgucu-cccuaaa----gugauauaaa-----------acacuugaagcuaucuaaauauucauaaguuuaaaa---------------------------------------------------agcuauuauaacuuuuucuucuga------------------aaaauaaucaaagga---------------------------aauuuuuaCGGCAUC-------------------GCCCAUGUGCUCGGGUAAGGGUCCUAUAAUAA-----------------------------------------------------GUGGGAUAC---GCUAAAUUUUUCC------------GUCUGU--AAAGUUUAGAAGAGAUUAU----CAGAC-UA----GCGAUGCAUGA--UGCCU-GUUAGGCGGC-UAAUGUUCAGC---GAAACCUUAAUA----GCAUGACUAUGAA-CGUAG-----------------------AUGUCUAAGUG----CCGAUAUGCUUGGAC-AGGGGUUCGACUCCCCU-CGUCUCCAuau Carnb_mltar Entco_duran NNNNNNN-----NNNNNNN--NNNNNNNNNCACAGUUC----GA-GCUUGAAUUGCGUUU--CGUAG-GUUACGU----CUACGUUAAA-----------ACGUUACAGUUAAAUAUAACUGCUAAAAACGAAAAC---------------------------------------------------AACUCUUACGCUUUAGCUGCCUAA------------------AAA-CAGUUAGCGUA---------------------------GAUCCUCUCGGCAUC-------------------GCCCAUGUGCUCGAGUAAGGGUCUCAAAUUUA-----------------------------------------------------GUGGGAUAC---GUUAAACUUUUCC------------GUCUGU--AAAGUUUAAAAGAGAUCAU----CAGAC-UA----GCAAUACAGAA--UGCCU-GUCACUCGGCAAGCUGUAAAGC---GAAACCUCAAAU---GAGUUGACUAUGAA-CGUAG-----------------------AUUUUUAAGUG----UCGAUGUGUUUGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Entco_duran Entco_faecm GGGGACG-----UUACGGA--UUCGACAGGCACAGUC-----GA-GCUUGAAUUGCGUUU--CGUAG-GUUACGU----CUACGUAAAA-----------ACGUUACAGUUAAAUAUAACUGCUAAAAACGAAAAC---------------------------------------------------AACUCUUACGCUUUAGCUGCCUAA------------------AAA-CAGUUAGCGUA---------------------------GAUCCUCUCGGCAUC-------------------GCCCAUGUGCUCGAGUAAGGGUCCUAACUUUA-----------------------------------------------------GUGGGAUAC---GUUUCAACUUUCC------------GUCUGU--AAGUUGAAAAAGAGAACAU----CAGAC-UA----GCGAUACAGAA--UGCCU-GUCACUCGGCAAGCUGUAAAGU---GAAUCCUUAAAU---GAGUUGACUAUGAA-CGUAG-----------------------AUUUUUAAGUG----GCGAUGUGUUUGGAC-GCGGGUUCGACUCCCGC-CGUCUCCAuug Entco_faecm Entco_faes1 GGGGGCG-----UUACGGA--UUCGACAGGCAUAGUU-----GA-GCUUGAAUUGCGUUU--CGUAG-GUUACGG----CUACGUUAAA-----------ACGUUACAGUUAAAUAUAACUGCUAAAAACGAAAAC---------------------------------------------------AAUUCUUUCGCUUUAGCUGCCUAA------------------AAACCAGCUAGCGAA---------------------------GAUCCUCCCGGCAUC-------------------GCCCAUGUGCUCGGGUCAGGGUCCUAAUCGAA-----------------------------------------------------GUGGGAUAC---GCUAAAUUUUUCC------------GUCUGU--AAAAUUUAGAGGAGCUUAC----CAGAC-UA----GCAAUACAGAA--UGCCU-GUCACUCGGCACGCUGUAAAGC---GAACCUUUAAAU----GAGUGUCUAUGAA-CGUAG-----------------------AGAUUUAAGUG----GCAAUAUGUUUGGAC-GCGGGUUCGACUCCCGC-CGUCUCCAuuu Entco_faes1 Entco_faes2 NNNNNNN-----NNNNNNN--NNNNNNNNNCAUAGUU-----GA-GCUUGAAUUGCGUUU--CGUAG-GUUACGG----CUACGUUAAA-----------ACGUUACAGUUAAAUAUAACUGCUAAAAACGAAAAC---------------------------------------------------AAUUCUUUCGCUUUAGCUGCCUAA------------------AAACCAGCUAGCGAA---------------------------GAUCCUCCCGGCAUC-------------------GCCCAUGUGCUCGGGUCAGGGUCCUAAUCGAA-----------------------------------------------------GUGGGAUAC---GCUAAAUUUUUCC------------GUCUGU--AAAAUUUAGAAGAGCUUAC----CAGAC-UA----GCAAUACAGAA--UGCCU-GUCACUCGGCACGCUGUAAAGC---GAACCUUUAAAU----GAGUGUCUAUGAA-CGUAG-----------------------AGAUUUAAGUG----GCAAUAUGUUUGGAC-GCNNNNNNNNNNNNNNN-NNNNNNNNNNN Entco_faes2 Strpco_equi GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCCUAUUUUGCAACU--CAUC----GGCA------GAUGUAAAAA-----------UGCC--AGUUAAAUAUAACUGCAAAAAAUAACACA------------------------------------------------------ACUUACGCUUUAGCUGCCUAA------------------AAACCAGCCGGCGU----------------------------GACUUCUAUAGGAUU-------------------GCUUGUGUCUUAUUAGAGGUCUCAAAACA--------------------------------------------------------GCAAGCUAC---GUUUAGGUGAUU-------------GUCUAG--UCACCUAAAA-AGAGAACC---CUAGAC-UC----GCAG-GCUGAU--GGCUUGAGUUAUGUGUCCUUGGUCUGU----UAAAGUAAG------ACAUAACCUAUGGU-UGUAG-----------------------ACAAAUAGGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuca Strpco_equi Strpc_zooep GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCCUAUUUUGCAACU--CAUC----GGCA------GAUGUAAAAA-----------UGCC--AGUUAAAUAUAACUGCAAAAAAUAACACA------------------------------------------------------ACUUACGCUUUAGCUGCCUAA------------------AAACCAGCCGGCGU----------------------------GACUUCUAUAGGAUU-------------------GUUUGUGUCUUAUUAGAGGUCUCAAAACA--------------------------------------------------------GCAAGCUAC---GUUUAGGUGAUU-------------GUCUAG--UCACCUAAAA-AGAGAACC---CUAGAC-UC----GCAG-GCUGAU--GGCUUGAGUUAUGUGUCCUUGGUCUGU----UAAAGUAAG------ACAUAACCUAUGGU-UGUAG-----------------------ACAAAUAGGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuca Strpc_zooep Strpc_suis1 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCUUGUUCUGCAACU--CAUC----GGCA------GAUGUAAAAA-----------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAC------------------------------------------------------ACUUACGCAUUAGCAGCUUAA------------------UAACCUGCCUGCGU----------------------------GACCAGUCGCGAAUU-------------------GCUUGUGUUUGCUGAUUGGUCUUAAAAUA--------------------------------------------------------GCAAGCUAC---GUUGGGAUUGA--------------GUCAGG--CAGUUCCAAA-AGAGAUUU---ACUGAC-UC----GCUU-GGUCUA--GGUUUGAGUUAUGUAUCGAGUUCAAGU----UAAAGUUAAAGCAAGACAUAACCUAUGGU-UGUAG-----------------------ACGAAUAAGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuau Strpc_suis1 Strpc_suis2 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCUUGUUCUGCAACU--CAUC----GGCA------GAUGUAAAAA-----------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAC------------------------------------------------------ACUUACGCAUUAGCAGCUUAA------------------UAACCUGCCUGCGU----------------------------GACCAGUCGCGAAUU-------------------GCUUGUGUUUGCUGAUUGGUCUUAAAAUA--------------------------------------------------------GCAAGCUAC---GUUGGGAUUGA--------------GUCAGG--CAGUUCCAAA-AGAGAUUU---ACUGAC-UC----GCUU-GGUCUA--GGUUUGAGUUAUGUAUCGAGUUCAAGU----UAAAGCAAG------ACAUAACCUAUGGU-UGUAG-----------------------ACGAAUAAGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuau Strpc_suis2 Strpc_uberi GGGGUUG-----UUACGGA--UUCGACAGGCACUAU------GAGGCAUGUUUUGCAACU--CAUC----GGCA------GAUGUAAAAA-----------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAC------------------------------------------------------UCUUACGCUUUAGCUGCCUAA------------------AAACCAGCUAGCGU----------------------------GACUUCUUCAAGAUU-------------------GCUUGUGUCCUGAUAGAAGUCUCAAAAACA-------------------------------------------------------GCAAGCUAC---GACUAAAGCCUU-------------GUCUAG--AGCCUUAGUA-AGAGAUUU---AUAGAC-UC----GCUA-AGUAAU--GGCUUGAGUUAUGUGUCCUUACUUAGU----CAAAACAAG------ACAUAACCUAUGGU-UGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuua Strpc_uberi Strpc_pyog1 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUGUUUUGCGUCC--CAUC----GGCA------GAUGUAAAU------------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAC------------------------------------------------------UCUUACGCUUUAGCUGCCUAA------------------AAACCAGCUAGCGU----------------------------GACUUCUACAAGAUU-------------------GCUUGUGUCCUGUUAGAAGUCUCAAAAUA--------------------------------------------------------GCAAGCUAC---GGUUACGAAAUU-------------GUCUAG--UUUCGUGACA-AGAGAUUG---AUAGAC-UC----GCAA-ACUAAU--GGCUUGAGUUAUGUGUCUUUAGUUUGU----UAAAUGAAG------ACAUAACCUAUGGA-CGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CAGCUCCAuca Strpc_pyog1 Strpc_pyog2 GGGGUUG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUGUUUUGCGUCC--CAUC----GGCA------GAUGUAAAU------------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAC------------------------------------------------------UCUUACGCUUUAGCUGCCUAA------------------AAACCAGCUAGCGU----------------------------GACUUCUACAAGAUU-------------------GCUUGUGUCCUGUUAGAAGUCUCAAAAUA--------------------------------------------------------GCAAGCUAC---GGUUACGAAAUU-------------GUCUAG--UUUCGUGACA-AGAGAUUG---AUAGAC-UC----GCAA-ACUAAU--GGCUUGAGUUAUGUGUCUUUAGUUUGU----UAAAUGAAG------ACAUAACCUAUGGA-CGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuca Strpc_pyog2 Strpc_pyog3 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGUAUAUUUCGCGACU--CAUC----GGCA------GAUGUAAAA------------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAU------------------------------------------------------UCUUACGCAUUAGCUGCCUAA------------------AAAACAGCCUGCGU----------------------------GAUCUUCACAAGAUU-------------------GUUUGCGUUUUGCUAGAAGGUCUUAUUUAUCA-----------------------------------------------------GCAAACUAC---GUUUGGCUACU--------------GUCUAG--UUAGUUAAAA-AGAGAUUU---AUAGAC-UC----GCUA-UGUGAG--GGCUUGAGUUAUGUGUCAUCACCUAGU----UAAAUCAAU------ACAUAACCUAUAGU-UGUAG-----------------------ACAAAUAUAUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuau Strpc_pyog3 Strpc_agal1 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGUAUAUUUCGCGACU--CAUC----GGCA------GAUGUAAAA------------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAU------------------------------------------------------UCUUACGCAUUAGCUGCCUAA------------------AAAACAGCCUGCGU----------------------------GAUCUUCACAAGAUU-------------------GUUUGCGUUUUGCUAGAAGGUCUUAUUUAUCA-----------------------------------------------------GCAAACUAC---GUUUGGCUACU--------------GUCUAG--UUAGUUAAAA-AGAGAUUU---AUAGAC-UC----GCUA-UGUGAG--GGCUUGAGUUAUGUGUCAUCACCUAGU----UAAAUCAAU------ACAUAACCUAUAGU-UGUAG-----------------------ACAAAUAUAUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuau Strpc_agal1 Strpc_agal2 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGUAUAUUUUGCGACU--CAUC----GGCA------GAUGUAAAA------------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAU------------------------------------------------------UCUUACGCAUUAGCUGCCUAA------------------AAAACAGCCUGCGU----------------------------GAUCUUCACAAGAUU-------------------GUUUGCGUUUUGCUAGAAGGUCUUAUUUAUCA-----------------------------------------------------GCAAACUAC---GUUUGGCUACU--------------GUCUAG--UUAGUUAAAA-AGAGAUUU---AUAGAC-UC----GCUA-UGUGAG--GGCUUGAGUUAUGUGUCAUCACCUAGU----UAAAUCAAU------ACAUAACCUAUAGU-UGUAG-----------------------ACAAAUAUAUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuau Strpc_agal2 Strpc_mutan GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGACCUAUUUUGCGACU--CAUC---UAGCG------GAUGUAAAA------------CGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAU------------------------------------------------------UCUUACGCAGUAGCUGCCUAA------------------AAACCAGCCUGUGU----------------------------GAUCAAUAACAAAUU-------------------GCUUGUGUUUGUUGAUUGGUCUUAUUGUUA-------------------------------------------------------ACAAGCUAC---GUUAGAACUGA--------------GUCAGG--CUGUUCUAAA-AGAGUUCU---ACUGAC-UC----GCAU-CGUUAG--AGUUUGAGUUAUGUAUUGUAACGGUGU----UAAAUAAAC------ACAUAACCUAUAGU-UGUAG-----------------------ACAAAUGGGUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuua Strpc_mutan Strpc_gordo GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU--CAUC---UAGCG------GAUGUAAAA------------CGCC--AGUUAAAUAUAACUGCAAAAAAUAAUACU------------------------------------------------------UCUUACGCUUUAGCUGCCUAA------------------AAACCAGCGGGCGU----------------------------GACCCGAUUCGGAUU-------------------GCUUGUGUCUGAUGACAGGUCUUAUUAUUA-------------------------------------------------------GCAAGCUAC---GGUAGAAUCUU--------------GUCUAG--UGAUUUUACA-AGAGAUUG---AUAGAC-UC----GCUU-GAUUUG--GGCUUGAGUUAUGUGUCAAAAUCAAGU----UAAAACAAU------ACAUAGCCUAUGGU-UGUAG-----------------------ACAAAUGUGUU----GGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuau Strpc_gordo Strpc_pneu1 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU--CGUG---UGGCG-------ACGUAAA-------------CGCU-CAGUUAAAUAUAACUGCAAAAAAUAACACU------------------------------------------------------UCUUACGCUCUAGCUGCCUAA------------------AAACCAGCAGGCGU----------------------------GACCCGAUUUGGAUU-------------------GCUCGUGUUCAAUGACAGGUCUUAUUAUUA-------------------------------------------------------GCGAGAUAC---GAUUAAGCCUU--------------GUCUAG--CGGUUUGAUA-AGAGAUUG---AUAGAC-UC----GCAG-UUUCUA--GACUUGAGUUAUGUGUCGAGGGGCUGU----UAAAAUAAU------ACAUAACCUAUGGU-UGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuua Strpc_pneu1 Strpc_pneu2 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU--CGUG---UGGCG-------ACGUAAA-------------CGCU-CAGUUAAAUAUAACUGCAAAAAAUAACACU------------------------------------------------------UCUUACGCUCUAGCUGCCUAA------------------AAACCAGCAGGCGU----------------------------GACCCGAUUUGGAUU-------------------GCUCGUGUUCAAUGACAGGUCUUAUUAUUA-------------------------------------------------------GCGAGAUAC---GAUUAAGCCUU--------------GUCUAG--CGGCUUGAUA-AGAGAUUG---AUAGAC-UC----GCAG-UUUCUA--GACUUGAGUUAUGUGUCGAGGGGCUGU----UAAAAUAAU------ACAUAACCUAUGGU-UGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuua Strpc_pneu2 Strpc_pneu3 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU--CGUG---UGGCG-------ACGUAAA-------------CGCU-CAGUUAAAUAUAACUGCAAAAAAUAACACU------------------------------------------------------UCUUACGCUCUAGCUGCCUAA------------------AAACCAGCAGGCGU----------------------------GACCCGAUUUGGAUU-------------------GCUCGUGUUCAAUGACAGGUCUUAUUAUUA-------------------------------------------------------GCGAGAUAC---GAUUAAGCCUU--------------GUCUAG--CGGCUUGAUA-AGAGAUUG---AUAGAC-UC----GCAG-UUUCUA--GACUUGAGUUAUGUGUCGAGGGGUUGU----UAAAAUAAU------ACAUAACCUAUGGU-UGUAG-----------------------ACAAAUAUGUU----GGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuua Strpc_pneu3 Strpc_mitis GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUUUGCGACU--CGUG---UGGCG-------ACGUAAA-------------CGCU-CAGUUAAAUAUAACUGCAAAAAAUAACACU------------------------------------------------------UCUUACGCUCUAGCUGCCUAA------------------AAACCAGCAGGCGU----------------------------GACCCGAUUUGGAUU-------------------GCUCGUGUUCAAUGACAGGUCUUAUUAUUA-------------------------------------------------------GCGAGAUAC---GAUCAAGCCUU--------------GUCUAG--CGGCUUGAUA-AGAGAUUG---AUAGAC-UC----GCGG-UUUCUA--GGCUUGAGUUAUGUGUCGAGGGACUGU----UAAACGAAU------ACAUAACCUAUGGU-UGUAG-----------------------ACAAAUAUGUU----AGCAGAUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuug Strpc_mitis Strpc_sobri GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCUUGUUUUGCAACC--CAUC---GGCAG-------AUGUCAAAA-----------UGCC--AGUUAAAUAUAACUGCAAAAAAUACAAAU------------------------------------------------------UCUUACGCAGUAGCUGCCUAA------------------ACACCAGCCUGUGU----------------------------GACUAAUAGCAGAUU-------------------GCUUGUGUUUGCCUAUUAGUCUUAAAAUCA-------------------------------------------------------GCAAGCUAC---AUUAGGUUGCA--------------GUCAGG--UCAGCCUAAA-AGAGAUUU---ACUGAC-UC----GCAA-GAUUUG--GGCUUGAGUUAUGUGUCGAGGUCUUGU----UAAACCAAU------ACAUAACCUAUGGU-UGUAG-----------------------ACGAAUAAGUU----AGCAGGUGUUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuag Strpc_sobri Strpc_ther1 NNNNNNN-----NNNNNNN--NNNNNNNNNCAUUAU------GAGGCAUAUUCUGCGACU--CGUG---UGGCG-------ACGUUAA-------------CGCU-CAGUUAAAUAUAACUGCAAAAAAUACUAAU------------------------------------------------------UCUUACGCUGUAGCAGCCUAA------------------ACACCUGCUCGCGU----------------------------GACUUCUAGCAGAUU-------------------GCUUAUGUUUGUUUAGAAGUUUUAUUGAUUU------------------------------------------------------AUAAGCUAC---GUUCGAUCAUU--------------GCCUAG--CUGGUCGAAA-AGAGAUUU---AUAGGC-UC----GCAU-AUAGAA--GGCUUGAGUUAUGUGUCGCCUAUCUGU----UAAAUGAAAG-----ACAUAACCUAUGGU-CGUAG-----------------------ACGAAUAUGUU----GGCAGAUGCUUGGAC-GUNNNNNNNNNNNNNNN-NNNNNNNNNNN Strpc_ther1 Strpc_ther2 GGGGCCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUCUGCGACU--CGUG---UGGCG-------ACGUUAA-------------CGCU-CAGUUAAAUAUAACUGCAAAAAAUACUAAU------------------------------------------------------UCUUACGCUGUAGCAGCCUAA------------------ACACCUGCUCGCGU----------------------------GACUUCUAGCAGAUU-------------------GCUUAUGUUUGUUUAGAGGUUUUAUUGAUUU------------------------------------------------------AUAAGCUAC---GUUCGAUCAUU--------------GCCUAG--CUGGUCGAAA-AGAGAUUU---AUAGGC-UC----GCAU-AUAGAA--GGCUUGAGUUAUGUGUCGUCUAUCUGU----UAAAUGAAAG-----ACAUAACCUAUGGU-CGUAG-----------------------ACGAAUAUGUU----GGCAGAUGCUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuaa Strpc_ther2 Strpc_ther3 GGGGUCG-----UUACGGA--UUCGACAGGCAUUAU------GAGGCAUAUUCUGCGACU--CGUG---UGGCG-------ACGUUAA-------------CGCU-CAGUUAAAUAUAACUGCAAAAAAUACUAAU------------------------------------------------------UCUUACGCUGUAGCAGCCUAA------------------ACACCUGCUCGCGU----------------------------GACUUCUAGCAGAUU-------------------GCUUAUGUUUGUUUAGAGGUUUUAUUGAUUU------------------------------------------------------AUAAGCUAC---GUUCGAUCAUU--------------GCCUAG--CUGGUCGAAA-AGAGAUUU---AUAGGC-UC----GCAU-AUAGAA--GGCUUGAGUUAUGUGUCGCCUAUCUGU----UAAAUGAAAG-----ACAUAACCUAUGGU-CGUAG-----------------------ACGAAUAUGUU----GGCAGAUGCUUGGAC-GUGGGUUCGACUCCCAC-CGGCUCCAuaa Strpc_ther3 Laccc_raffi NNNNNNN-----NNNNNNN--NNNNNNNNNUGUUGU------CGCGUAUGAGCUGCGAUU--AGUG---CGGCGC-----CACUCUAAAC-----------CGCCGCAGAUAAAUAUAACUGCUAAAAAUACACAA------------------------------------------------------ACUUACGCAGUAGCUGCCUAA------------------ACCACAGCCUGCGU----------------------------GCCUGACUUUCGCUC-------------------GCCUAUGGCGAUUUGAUGGCCUAAUUUA---------------------------------------------------------GUAGGAUAC---GAUUUGACGGU--------------GUCUUG--ACGUCAGAGA-AGAGAUUA---AGAGAC-UC----GCAAGUUAACUU-UGUUCGAGGAUUGUCUCGUUAGCUUGU----UAAAUUUAG------ACAGUCCCUAUGAU-UGUAG-----------------------ACGCUGAUAUA----GCAAGGCAUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_raffi Laccc_plant NNNNNNN-----NNNNNNN--NNNNNNNNNUGUUGU------CGCGUAUGAGCUGCGAUU--AGUGA---GACG-----UCACUCUAAAC-----------CGUCGCAGAUAAAUAUAACUGCUAAAAAUACACAA------------------------------------------------------ACUUACGCUUUAGCUGCCUAA------------------ACCACAGCCGGCGU----------------------------GCCAGACUUUCGUUC-------------------GCCUAUGACGAUUUGAUGGCCUAAUUUA---------------------------------------------------------GUAGGAUAC---GCUUUUGUGGU--------------GUCUUG--ACAUGAAAGA-AGAGAUUA---AGAGAC-UC----GCCAGCUGACUU-UGUUCGAGGAUUGUCUUGUCAGUUGGG----UAAAUUUAG------ACAGUCCCUAUGAU-UGUAG-----------------------ACGCUGAUAUA----GCAAGGCAUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_plant Laccc_garvi NNNNNNN-----NNNNNNN--NNNNNNNNNCAUUGU------CGCGCAUGAACUGCAACU--GGUGG--UGAUG-----UCACCUAAAUC-----------CAUCGCAGAUAAAUAUAACUGCUAAAAAUAACACU------------------------------------------------------UCUUACGCACUCGCUGCCUAA------------------ACACCAGCUUGCGU----------------------------AGCUGAUGAUCGUUC-------------------GCCGAUGGCGGCCUGAAGCUCUAAACCUCA-------------------------------------------------------GUCGGAUAC---GUUUUUAUGGUG-------------GCUUUA---CAUAAAAAA-AGAGAUUU---UAAAGCACC----GCAAAUUUCUGC-UGUUUGAGACUGGCUUUGGAAAUUUGU----UAAACUAGA------GAAAGUCCUAUGGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUCUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_garvi Laccc_lact1 GGGGGCG-----UUACGGA--UUCGACAGGCAUUGU------CGCGCAUGAACUGCAACU--GCUGA---GGGA-----UCAGGAUAAUC-----------AUCCGCAGAUAAAUAUAACUGCUAAAAAUAAUACA---------------------------------------------------CAAACUUACGCAAUGGCAGCCUAA------------------ACAGCACCAUGCGU----------------------------GCCUGAUUUUUGCUC-------------------UCUGAUGGCAAUUUGACGGCCUAAACUUUUA------------------------------------------------------GUCAGAUAC---GUUGUUGUGGA--------------GGCUUG--ACGCAGCAAA-AGAGAUUU---AAAGCC-CC----GCAAAAUGUCGC-UGUUUGAGACUGGCUUUGGCAUUUUGU----UAAAUUUGA------GAAAGUCCUAUGGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGGGGUUCGACUCCCCU-CGCCUCCAuug Laccc_lact1 Laccc_lact2 GGGGGCG-----UUACGGA--UUCGACAGGCAUUGU------CGCGCAUGAACUGCAACU--GCUGA---GGGA-----UCAGGAUAAUC-----------AUCCGCAGAUAAAUAUAACUGCUAAAAAUAAUACA---------------------------------------------------CAAACUUACGCAAUGGCAGCCUAA------------------ACAGCACCAUGCGU----------------------------GCCUGAUUUUUGCUC-------------------ACUGAUGGCAAUUUGACGGCCUAAACUUUUA------------------------------------------------------GUCAGAUAC---GUUGUUGUGGA--------------GACUUG--ACGCAGCAAA-AGAGAUUU---AAAGUC-CC----GCAAAAUGUCGC-UGUUUGAGACUGGCUUUGGCAUUUUGU----UAAAUUUGA------GAAAGUCCUAUGGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGGGGUUCGACUCCCCU-CGCCUCCAuua Laccc_lact2 Laccc_lact3 NNNNNNN-----NNNNNNN--NNNNNNNNNCAUUGU------CGCGCAUGAACUGCAACU--GCUGA---GGGA-----UCAGGAUAAUC-----------AUCCGCAGAUAAAUAUAACUGCUAAAAAUAAUACA---------------------------------------------------CAAACUUACGCAAUGGCAGCCUAA------------------ACAGCACCAUGCGU----------------------------GCCUGAUUUUUGCUC-------------------ACUGAUGGCAAUUUGACGGCCUAAACUUUUA------------------------------------------------------GUCAGAUAC---GUUGUUGUGGA--------------GGCUUG--ACGCAGCAAA-AGAGAUUU---AAAGCC-CC----GCAAAAUGUCGC-UGUUUGAGACUGGCUUUGGCAUUUUGU----UAAAUUUGA------GAAAGUCCUAUGGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_lact3 Laccc_lact4 NNNNNNN-----NNNNNNN--NNNNNNNNNCAUUGU------CGCGCAUGAACUGCAACU--GCUGA---GGGA-----UCAGGAUAAUC-----------AUCCGCAGAUAAAUAUAACUGCUAAAAAUAAUACA---------------------------------------------------CAAACUUACGCAAUGGCAGCCUAA------------------ACAGCACCAUGCGU----------------------------GCCUGAUUUUUGCUC-------------------ACUGAUGGCAACUUGACGGCCUAAACUUUUA------------------------------------------------------GUCAGAUAC---GUUGUUGUGGA--------------GGCUUG--ACGCAGCAAA-AGAGAUUU---AAAGUC-CC----GCAAAAUGUCGC-UGUUUGAGACUGGCUUUGGCAUUUUGU----UAAAUUUGA------GAAAGUCCUAUGGU-UGUAG-----------------------ACGUUGAUGUA----GCAAGGUGUUUGGAC-AGNNNNNNNNNNNNNNN-NNNNNNNNNNN Laccc_lact4 ACTINOBACTERIA Actmy_naesl GGGGAUG------AUCGGU--UUCGACGACGGUCGUA-----GGUUCAGGAGAAGCGGGU--CGAGG-AUGCGCAGUCAUCUCG----UCAACGC----UCUGCGCG---AACCAAUAGGUGCCGAUAACACUCGC---------------------------------------------------ACCGACUUCGCCCUCGCCGCCUGA------------------------GCGAGCCUCGAAGUC---------------------CGUCAGCCCGGGGAAC-----------------GCUUCCGCCCCGGUUCCUGGCGUCAUCUA---------------------------------------------------------GGAAGCCACU--GCUGAGAGCCCGU------------GUCGGUAGGGCUCU-CGGGACUUUUC-----AUCGACUG------AGCCCGU-CGGCGUCCUUGCUCGCGUGAGACGCCGGGGCU---GAGAAAAACGCUA---GCGAGCUGCACC-CGGAG-----------------------AAGUCCUGUUG-----UGCGGCCGUCGGAC-GGGGGUUCGAUUCCCCC-CAUCUCCACga Actmy_naesl Uncul_hook2 NNNNNNN------NNNNNN--NNNNNNNNNNNNNNNN-----NNNNNAGGAGAAGCGGGC--CGAGG-AUGCAGGCUUAUCUCG----UAAACGA----UGUCUGCA----AAACACAGGUGCCGAUAACAAGCGC---------------------------------------------------ACCGACUUCGCCCUCGCCGCCUGA------------------------GCGAGCCCCGAAGUC---------------------CGUCAGCCCGAGCUA------------------GCUCUCGACUCGGAUCCUGGCGUCAUCUA---------------------------------------------------------UAGAGCCACU--GCUCGCAGUCCUC------------GUCACCGGGGCUGC-GGGGACUUUCA-----GGUGACUG------AGCCCGU-CCGCAUC-UUGUCUGCGUGAGUGCGGGGGCC----GAGAAAAACGACA---GCAGACUGCGCC-CNNNN-----------------------NNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_hook2 Brevi_linen GGGGAUG------AUCGGU--UUCGACGUCGGACACU-----GCGACGGGAGAAGCGGGC--CGAGA-AUGUAGAGUCAUCUCG---UUAAU-------GUCCUCUGCA-AAACAAUAGGUGCUAAGUCUAAUAAC------------------------------------------------CGCACCGAUUUCGCCCUCGCUGCCUGA------------------------UUAGGCCGAGCUGCGAAUC-----------------CGUCAGUCUAGAGUU------------------GCUUCCACUCUAGGUCCUGGCGUCGCUUA---------------------------------------------------------GGGAGCCACU--GCUUCAGAUAUUU------------GUUGAGGGUAUCUG-AGGGACUUUUA-----CUCAACUC------CGUUCGUUGGUCCACAUGUUCGUGUGA-GGGCCAGAACC----UAAGAAACUACUU--CACGAACUGCGCC-CGGAG-----------------------AAGUCCUGACA-----AUCUGCCGACGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACCc Brevi_linen Artbr_sFB24 GGGGAUG------AUCGGU--UUCGACGAUGUUAGUC-----GCGACAGGUGAAGCGGGC--CGAGG-AUGCAGAAUUAUCUCG---UAAAC-------GCUGUCUGCA-AAACAAUAAGUGCCAAACAAACGCGC---------------------------------------------------ACUGACUUCGCUCUCGCUGCCUAA------------------------GCAGUAAGACAGUC----------------------CGUCAGCCCGGGAUU------------------GCUAUCGUCCCGGUUCCUGGCGUCAUUA---------------------------------------------------------AGAUAGCCACU--GCUGUUUACCUUC------------GUCAUUGGGGUGAA-CGGGACUCUUA-----GAUGACUG------GGCCCGGAUCAGCUACUUGUUUGCAGGAUAGCUGGGGCC----GAGAAAAUCCGA---CGCAAACUGCGCC-CGGAG-----------------------AAGCCCUGACA-----ACACGACAUCGGAC-GGGGGUUCAAUUCCCCC-CAUCUCCACCA Artbr_sFB24 Kocur_varia NNNNNNN------NNNNNN--NNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNNNN---NNNNN-------NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNN------------------------NNNNNNNNNNNNNN----------------------NNNNNNNNNNNNNNN------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------------NNNNNNNNNNN--NNNNNNNNNNNNN------------NNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNN---NNNNNNNNNNNNN-NNNNN-----------------------NNCCGGCGUAU-----UGGAGCUUCUGGAC-GUGGGUUCGACUCCCAC-CGUCUCCAuau Kocur_varia Troph_whipp GGGGAUG------ACUGGU--UUCGACGCUGUUUGUG-----UACUCGUGGGAAGCGGGU--CGAGG-AUGCGAGGUUGUCUCG---UUAAC-------GAUCCUCGCA--AAAUAUAAGUGCCAACUUAAAGCGC---------------------------------------------------ACUGAUCUAAGUCUUGCUGCUUAA------------------------GCGCUUAGAUC-------------------------UGUCGGUAUAGGGCUU-----------------GUCUUCGGCCCUGUAUCCGGCAUGGUUUU--------------------------------------------------------AGAGGACUU----GCCGCGUGUUUGCC-----------GCUUGCGUGAACAC-CGGGACUUUAUU----GCAAGCUG------GGCCUGUUGAUUUAGAUUCCGCUGCAAAGAAUCAGGGCU----GAGUAUAACGGUUU-UAGCGGAUACACC-CGUAG-----------------------AAGUCACGGGC-----UCCAUGCCGCGGAC-GGGGGUUCGAUUCCCCC-CAUCUCCACug Troph_whipp Clavi_michi GGGGAUG------AUCGGU--UUCGACAUUGCCUGAA-----UGACUGCGAGAAGCGGGU--CGAGG-AUGCAGGGCUAUCUCG---UAAAC-------GCUCUCUGCA--AAAUACAACUGCCAAUAACAAGCAG---------------------------------------------------UCGUCCUUUGUUCUCGCUGCCUAA-------------------GCGAGCGCACUAACAGGAC----------------------CGUCGACCCGGUGAU------------------GCUCUCUAUCCGGUAAGUCGGCGUCAGAA-------------------------------------------------------AAGGGAGCUC----GCUGCGCGGUCGU------------GCCUCAGGGCCGCG-CGGGACUCGAA----CUGAGGCUG------GGCCCGUCGGAUCAGAUGCCAGGAGCAAGUUCCGGGGCC----GAGCAGGACGCCUU-UCCUGGAUACACC-CGUAG-----------------------AAGGCGCAGGA-----UUACAGCAGUGGAC-CGGGGUUCGAUUCCCCG-CAUCUCCACCA Clavi_michi Leifso_xyli GGGGAUG------AUCGGU--UUCGACAUUGUCUGCG-----UGAGUAUGAGAAGCGGGU--CGAGG-ACGCAUGGUUAUCUCG---UUAAC-------GAUCCAUGCA--AAAAAUAAGUGCCAAUUCCAAGAGC------------------------------------ACUGUCUCGGCCAAGGCCGACUUCGCCCUCGCGGCGUAA-------------GUUCACCUCAGCCAUCUGAAGAGGC----------------------CGUCAGACCGGGAACU-----------------GUUCUCUACCCGGAGCCUGGCGUCAGUG---------------------------------------------------------AGAGAACUC----GCUUCUGCGUUGA------------GUAUCAGGGCGCAG-AGGGACUUCAA----CUGAUACUA------GGCCCGCCGGAACAGGUGCCAGCGACACGUUCCGGGGCC----GAGAAAGCGACA---CACUGGCUACGCC-CGUAG-----------------------AAGGCAUAUGA-----CCACAGCAGUGGAC-GGGGGUUCGAUUCCCCC-CAUCUCCACCA Leifso_xyli Coryn_dipht GGGGCUG----AUUUUGGU--UUCGACUGCGUGCAUU-----AAGCUAGGGGAAGCGUGC--CGGUGCAGGCUAGAGACCACCGAUUUUAAG-------CGUCGUAGC-AAAUAUAUAAGCGCAGAGAACACUCAG---------------------------------------------------CGCGACUACGCCCUCGCUGCCUAA------------------UUUGCAGCGACCUGCGUGUC----------------------UGUCAGCCUAGAUUC------------------GUCUCUGGUUUAGUGUCUGGCAUCGAUUA---------------------------------------------------------AGAGACUU----GCUGGUUUGUUGU------------GUCAACGGGGCAAACUGGGAC--UUUCA-CCGAUGACUG------GGCUCAUCAUCCGGGUGUGUUCGUCCAAGCCGGAGAGCC----GAGUAGAGAUCCACGCGCGAACUGCGCA-CGGAG-----------------------AAGCCCUAGCG-----AGGUGACGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACCA Coryn_dipht Coryn_gluta GGGGCUG-----ACAUGGU--UUCGACUACGUUGAUU-----UAGCCAGGGGAAGCGUGC--CGGUGAAGGCUGGAGACCACCG----UAAG-------CGUCGCAGC-AAACCAAUAAGCGCCGAGAAGUCUCAG---------------------------------------------------CGCGACUACGCCCUCGCUGCAUAA--------------------GCAAGCGACC-GCGUGUC----------------------UGUCAGCCUAGGGAA------------------GUCCCUGACCUAGAUCCUGGCAUCGACUA---------------------------------------------------------AGGGACUU----GCUGUUCAAUCGC------------GUCAGCGGGGUUGAACAGGAC--UUUUA-CCGUUGACUG------GGCUCAUCAUCCGGAAGUGUUCGUCCUAGCCGGAGGGCC----AAGCAGAGAUCUUUGCGCGAACUGCGCA-CGGAG-----------------------AAGCCCUGGCG-----AGGUGACGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACCg Coryn_gluta Coryn_effic GGGGCUG-----ACAUGGU--UUCGACUACGUUGAUU-----GAGCCAGGGGAAGCGUGC--CGGUGAAGGCUGGAGACCACCG----UGAG-------CGUCGCAGC-AAACCAAUAAGCGCCGAGAAGACUCAG---------------------------------------------------CGCGACUACGCCCUCGCUGCCUAA--------------------GU-AGCGACC-GCGUGUC----------------------UGUCAGCCCGGGGAU------------------GUCCCUGCCCCGGAUGCUGGCAUCGACUA---------------------------------------------------------AGGGACUU----GCUAUCCAACCGC------------GUCAGCGGGGUUGGAUGGGAC--UUCUA-CCGCUGACUG------GGCCCAUCAUCCGGAUGUGUUCGUCCUAGCCGGAGGGCC----AAGCAGAGAUCGCUGCACGAACUGCGCA-CGGAG-----------------------AAGCCCUGGCA-----AAGUAGCGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACga Coryn_effic Gordo_rubri NNNNNNN------NNNNNN--NNNNNNUGCGUACGUU-----GAGGUAGGGGAAGCGUGU--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGCUGC-AAACAUAUAAGCGCCGAUUCCAAUCAG---------------------------------------------------CGCGACUACGCACUCGCUGCCUAA------------------------GUAGC-GACUGCG-----------------------UGUCUGUCAGUCCGGGUUC--------------GCCCUCGGCCCGGGUACUGGCAUCAGCUA---------------------------------------------------------GAGGGCUUU---ACCGUUCGACUC-------------GGUCGCGGAGUCGAACGGGACAACCAACA---GCGACUG------GGAUCGUCAUCCUGGCUUGUUUGCGAGACUGGGAGAUCC----AAGUAGAGACAUA---GCAAACUGCACA-CGGAG-----------------------AAGCCCUAGCU-----UUGCUGCGGAGGAC-CCGGNNNNNNNNNNNNN-NNNNNNNNNNN Gordo_rubri Mycbm_aviu1 GGGGCUG------AAAGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAACUGACCACCG----UAAG-------CGUCGUUGC-AAAUAGAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-AGCUAGUC----------------------CGUCAGCCCGGGAAC------------------GCCCUCGACCCGGAGCCUGGCGUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUUC-------------GGUCGCGGGACUCAUCGGGACACCAACA----GCGACUG------GGAUCGUCAUCCUGGCUUGUUCGCGUGACCAGGAGAUCC----GAGUAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACug Mycbm_aviu1 Mycbm_aviu2 GGGGCUG------AAAGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAACUGACCACCG----UAAG-------CGUCGUUGC-AAAUAGAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-AGCUAGUC----------------------CGUCAGCCCGGGAAC------------------GCCCUCGACCCGGAGCCUGGCGUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUUC-------------GGUCGCGGGACUCAUCGGGACACCAACA----GCGACUG------GGAUCGUCAUCCUGGCUUGUUCGCGUGACCAGGAGAUCC----GAGUAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_aviu2 Mycbm_scrfl NNNNNNN------NNNNNN--NNNNACAUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AACCAAUUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-AGCUAGUC----------------------CGUCAGACCGGGAAA------------------GCCCUCGACCCGGAGCCUGGCGUCAGCUA---------------------------------------------------------GAGGGAUCA---ACCGAUGAGUUC-------------GGUCGCGGGACUCAUCGGGACACCAACA----GCGACUG------GGAUCGUCAUCCUGGCUAGUCCGCGUGACCAGGAGAUCC----GAGCAGAGGCAUA---GCGGACUGCGCA-CGGAG-----------------------AAGUCUUGAGG-----GAAUGCCGUUGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_scrfl Mycbm_intra NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAACCGACCACCG----UAAG-------CGUCGUUGC-AAACAGAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-AGCUAGUC----------------------CGUCAGACCGGGAAC------------------GCCCUCGACCCGGAGCCUGGCGUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUUAUCGGGACACCAACA----GCGACUG------GGAUCGUCAUCUCGGCUUGUUCGCGUGACCGGGAGAUCC----GAGUAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGUCUUGAGG-----GAAUGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_intra Mycbm_xenop NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AACUAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-AGCUAGUC----------------------CGUCAGGCCGGGAGU------------------UCCCUCGACCCGGAUCCUGGCGUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGGGUUC-------------GGUCGCGGGACCCAUCGGGACACCACACA---GCGACUG------GGAUCGCCGUCCCGGCUAGUUCGCGAGACCGGGAGAUCC----GAGUAAGGGCAAA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GUAUGCCGUANNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_xenop Mycbm_flave NNNNNNN------NNNNNN--NNNNACUUCGAGCGUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AACCAAUUAAGCGCCGAUUCCAAUCAG---------------------------------------------------CGCGACUACGCACUCGCUGCCUAA------------------------GCGAC-UGCGUGUC----------------------UGUCAGCCCGGGAGA------------------GCCCUCGACCCGGUGUCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUAA---ACCGGUGGGUCC-------------GGUCGCGGGACUCAUCGGGACAUCAAACA---GCGACUG------GGAUCGUCAUCCUGACUUGUUCGCGUGAUCAGGAGAUCC----GAGUAGAGACAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAACGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_flave Mycbm_malmo NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AACCAUAUAAGCGCCGUUUCAACACAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-AGCUAGUC----------------------CGUCAGACCGGGAAC------------------GCCCUCGACCCGGAGCCUGGCGUCAGCUG---------------------------------------------------------GAGGGAUCC---ACCGGUGAGUCC-------------GGUCGCGGGACUCAUCGGGACAUACACA----GCGACUG------GGAUCGUCAUCCUGGCUGGUUCGCGUGACCGGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_malmo Mycbm_szulg NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AACCAAUUAAGCGCCGAGAACACUCAG---------------------------------------------------CGCGACUUCGCUCUCGCUGCCUAA------------------------GCGAC-AGCAAGUC----------------------CGUCAGACCGGGAAA------------------GCCCUCGACCCGGACCCUGGCGUCAUCUA---------------------------------------------------------GAGGGAUCC---ACCGGUGAGUUC-------------GGUCGCGGGACUCAUCGGGACACCAACA----GCGACUG------GGAUCGUCAUCCUGGCUAGUUCGCGUGACCAGGAGAUCC----GAGUAGAGACAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_szulg Mycbm_chelo NNNNNNN------NNNNNN--NNNNACAGCGAGUCUC-----GACUUAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCAUUGC-AACCAAUUAAGCGCCGAUUCUCAUCAG---------------------------------------------------CGCGACUACGCACUCGCUGCCUAA------------------------GCGAC-UGCGUGUC----------------------UGUCAGACCGGGAGC------------------GCCCUCAGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGACAA---A-CUACGGGUUC-------------GGUCGCGGGACCCGUAGGGACAUCAAACA---GCGACUG------GGAUCGUCAUCUCGGCUUGUUCGCGGGACCGAGAGAUCC----AAGUAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUAAUG-----AACGGCCGUUGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_chelo Mycbm_kansa NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGACC------------------GCCCUCGACCCGGACUCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCA---ACCGAUGAGUUC-------------GGUCGCGGGACUCGUCGGGACACCAACA----GCGACUG------GGAUCGUCAUCCUGGCUAGUUCGCGUGACCAGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUANNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_kansa Mycbm_gordo NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AACCAUAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCGGACCGGGAAC------------------GCCCUCGCCCCGGACCCCGGCAUCAGCUA---------------------------------------------------------GAGGGAUCA---ACCGAUGAGUUC-------------GGUCGCGGGACUCAUCGGGACACCAACA----GCGACUG------GGAUCGUCAUCCUGGCUAGUCCGUGUGACCAGGAGAUCC----GAGCAGAGACAUA---GCGGACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUANNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_gordo Mycbm_bovis GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-GACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUCCUCGGGACAACCACA----GCGACUG------GGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_bovis Mycbm_micr1 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-GACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUCCUCGGGACAACCACA----GCGACUG------GGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_micr1 Mycbm_micr2 NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-GACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUCCUCGGGACAGCCACA----GCGACUG------GGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUANNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_micr2 Mycbm_tube1 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-GACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUCCUCGGGACAACCACA----GCGACUG------GGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_tube1 Mycbm_afric GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-GACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUCCUCGGGACAACCACA----GCGACUG------GGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCC----GAGCAGAGGCAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_afric Mycbm_tube2 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-GACCAAAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGGCCCGGACCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCC---ACCGAUGAGUCC-------------GGUCGCGGGACUCCUCGGGACAACCACA----GCGACUG------GGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCC----AAGCAGAGGCAUA---ACGAACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_tube2 Mycbm_lepra GGGGCUG------AAAGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AGCAAUAUAAGCGCCGAUUCAUAUCAG---------------------------------------------------CGCGACUAUGCUCUCGCUGCCUAA------------------------GCGAU-GGCUAGUC----------------------UGUCAGACCGGGAAC------------------GCCCUCGUCCCGGAGCCUGGCAUCAGCUA---------------------------------------------------------GAGGGAUCU---ACCGAUGGGUUC-------------GGUCGCGGGACUCGUCGGGACACCAAC----CGCGACUG------GGAUCGUCAUCCUGGCUAGUUCGCGUGAUCAGGAGAUCC----GAGUAGAGGCAUA---GCGAACUACGCA-CGGAG-----------------------AAGCCUUGAGG----GAAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACCg Mycbm_lepra Mycbm_mari1 GGGGCUG------AACGGU--UUCGACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGAUGC-AACUAGAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCGGACCGGGAAC------------------GCCCUCGCCCCGGACCCCGGCAUCAGCUA---------------------------------------------------------GAGGGAUCA---ACCGAUGAGUUC-------------GGUCGCGGGGCUCAUCGGGACAUCAACA----GCGACUG------GGAUCGUCAUCCUGGCUAGUUCGCGUGACCAGGAGAUCC----GAGCAGAGACAUA---GCGGACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACaa Mycbm_mari1 Mycbm_mari2 NNNNNNN------NNNNNN--NNNNACUUCGCGCAUC-----GAAUCAAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGAUGC-AACUAGAUAAGCGCCGAUUCACAUCAG---------------------------------------------------CGCGACUACGCUCUCGCUGCCUAA------------------------GCGAC-GGCUAGUC----------------------UGUCGGACCGGGAAC------------------GCCCUCGCCCCGGACCCCGGCAUCAGCUA---------------------------------------------------------GAGGGAUCA---ACCGAUGAGUUC-------------GGUCGCGGGGCUCAUCGGGACAUCAACA----GCGACUG------GGAUCGUCAUCCUGGCUAGUUCGCGUGACCAGGAGAUCC----GAGCAGAGACCUA---GCGGACUGCGCA-CGGAG-----------------------AAGCCUUGAGG-----GAAUGCCGUAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Mycbm_mari2 Mycbm_smegm GGGGCUG------AACGGU--UUCGACUUCGAGCAUC-----GAAUCCAGGGAAGCGUGC--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGUUGC-AACCAAUUAAGCGCCGAUUCCAAUCAG---------------------------------------------------CGCGACUACGCCCUCGCUGCCUAA------------------------GCGAC-GGCUGGUC----------------------UGUCAGACCGGGAGU------------------GCCCUCGGCCCGGAUCCUGGCAUCAGCUA---------------------------------------------------------GAGGGACCC---ACCCACGGGUUC-------------GGUCGCGGGACCUGUGGGGACAUCAAACA---GCGACUG------GGAUCGUCAUCUCGGCUUGUUCGUGUGACCGGGAGAUCC----GAGUAGAGACAUA---GCGAACUGCGCA-CGGAG-----------------------AAGCCUCGAGG-----ACAUGCCGUAGGAC-CCGGGUUCAAUUCCCGG-CAGCUCCACCA Mycbm_smegm Nocar_farci GGGGCUG------AACGGU--UUCGACUGCGUACGUU-----GAUUCAGGGGAAGCGUGU--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGCUGC-AACCAAUUAAGCGCCGAUUCUCAUCAG---------------------------------------------------CGCGAGUACGCUCUCGCUGCCUAA------------------------GCGA--AGCGUCUC----------------------UGUCGGCCCGGGAUAU-----------------GCCCUCGGUCCCGGUGCCGGCAUCAGCUA---------------------------------------------------------GAGGGCUC----ACCGUCCGCCUC-------------GGUCGCGGAGACGGACGGGACAUCCAAC---AGCGACUG------GGAUCGUCAUCUCGGCUUGUUCGCGUGACCGAGAGAUCC----GAGCAGAGACACA---GCGAACUGCACA-CGGAG-----------------------AAGCCCUGAAG-----ACGCGGCGGAGGAC-CCGGGUUCGAUUCCCGG-CAGCUCCACga Nocar_farci Nocar_aste1 NNNNNNN------NNNNNN--NNNNACUGUGUGCGCC-----GAGGUAGGGGAAGCGUGU--CGGUGCAGGCUGGAGACCACCG---UUAAG-------CGUCGCGGC-AACCAAUUAAGCGCCGAUUCCAAUCAG---------------------------------------------------CGCGACUACGCCCUCGCUGCCUGA---------------------UCAGCGA--CGGCUAGC----------------------UGUCGGCCCGGGUUGU-----------------GUUCCCGAACCCGGAUGCCGGCAUCAUCUCA-------------------------------------------------------GGGAACUC----ACCGUGUUCGCC-------------GGUCGCGGACGGACACGGGACAGCAAAC---AGCGACUG------GGAUCGUCAUCUCGGCUUGUUCGCGUGACCGGGAGAUCC----AAGUAGAGACAUA---GCG-GCUGCACA-CGGAG-----------------------AAGCCCUACUG-----ACUCGACACAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Nocar_aste1 Nocar_aste2 NNNNNNN------NNNNNN--NNNNACUGUGUGCGCC-----GAGGUAGGGGAAGCGUGU--CGGUGCAGGCUGGAGACCACCG---UUAAG-------CGUCGCGGC-AACCAAUUAAGCGCCGAUUCCAAUCAG---------------------------------------------------CGCGACUACGCCCUCGCUGCCUGA---------------------UCAGCGA--CGGCUAGC----------------------UGUCGGCCCGGGUUGU-----------------GUUCCCGAACCCGGAUGCCGGCAUCAUCUCA-------------------------------------------------------GGGAACUC----ACCGUGUUCGCC-------------GGUCGCGGACGGACACGGGACAGCAAAC---AGCGACUG------GGAUCGUCAUCUCGGCUUGUUCGCGUGACCGGGAGAUCC----AAGUAGAGACAUA---GCGGACUGCACA-CGGAG-----------------------AAGCCCUACUG-----ACUCGACACAGNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Nocar_aste2 Rhococ_equi NNNNNNN------NNNNNN--NNNNNNUGCGUACGUU-----GAGCAAGGGGAAGCGUGU--CGGUGCAGGCAAGAGACCACCG----UAAG-------CGUCGCUGC-AACCAAUUAAGCGCCGAGUCCACUCAG---------------------------------------------------CGCGAGUACGCCCUCGCUGCCUAA------------------------GCGAG-CGCGUCUC----------------------UGUCAGCCCGGGUUU------------------GCUCUCGACCCGGAUCCUGGCAUCGACUA---------------------------------------------------------GAGAGCUCU---ACCGUACGGCUC-------------GGUCGCGGAGACGUGCGGGACAACAAAC---AGCGACUG------GGAUCGUCAUCUCGUCUUGUUCGCGAGAACGGGAGAUCC----GAGUAGAGACAUA---GCGAACUGCACA-CGGAG-----------------------AAGCCCUCGCG-----AGGCGGCGGAGGAC-CCGGNNNNNNNNNNNNN-NNNNNNNNNNN Rhococ_equi Propi_acne1 GGGGAUG------ACUGGU--UUCGACUUGGAAUGGU----UGUUCCAGGAGAAGCGGGC--CGAGG-ACCCAGGGUCAACUCG----UUAAC------GAUCCUUGG-AAACCUAUAAGUGCCGAGAACACUCGC---------------------------------------------------ACUGACUUCGCUCUCGCUGCCUGA------------------------UCAGUGAUCGAAG-----------------------GGUCAGCCCGGAUGUA-----------------GCCUUCCGUCCGGAUCCUGGCCUCGUUUA---------------------------------------------------------GAAGGCUU----GCCGUACAGCUGU------------GGUCACGGGGGCUGUACGGGACGUUUA----CGUGACUG------GGCUUGU--CUGCACCAUGUCGGUGUGAGUGCAGGAGCC----GAGCAAUAACGACAGCAUCGACUGCGCC-CGGAG-----------------------AAUGUCUGGAC-----GGUCUUUCAAGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCACua Propi_acne1 Propi_acne2 GGGGAUG------ACUGGU--UUCGACUUGGAAUGGU----UGUUCCAGGAGAAGCGGGC--CGAGG-ACCCAGGGUCAACUCG----UUAAC------GAUCCUUGG-AAACCUAUAAGUGCCGAGAACACUCGC---------------------------------------------------ACUGACUUCGCUCUCGCUGCCUGA------------------------UCAGUGAUCGAAG-----------------------GGUCAGCCCGGAUGUA-----------------GCCUUCCGUCCGGAUCCUGGCCUCGUUUA---------------------------------------------------------GAAGGCUU----GCCGUACAGCUGU------------GGUCACGGGGGCUGUACGGGACGUUUC----CGUGACUG------GGCUUGU--CUGCACCAUGUCGGUGUGAGUGCAGGAGCC----GAGCAAUAACGACAGCAUCGACUGCGCC-CGGAG-----------------------AAUGUCUGGAC-----GGUCUUUCAAGGAC-GCGGGUUCAAUUCCCGC-CAUCUCCACua Propi_acne2 Propi_acnp1 gagcugu------agugca--gcguuuuccggacGGU----UGUUCCAGGAGAAGUGGGG--UGAGG-GCCCAGGGUCAACUUG----UUAAC------GAUCGUUGG-GAAUCUAUAAGUGCCGAGAAUACUCGC---------------------------------------------------ACUGACUUCGCUCUUGCUGCCUGA------------------------UCAGUGAUCGAAG-----------------------GGUCAGCCCGGAUU-----------------------------------CUGGUUUCGUUGC---------------------------------------------------------GAUGACUU----GCCGCCCAGUUGU------------UGUCGUGGUGACUGGGCGGAAUUAUUU---CUACGAUCG------AGUUUGU--UUGCACCAUGUCGGUGUGAGUGCAGGAGCC----GAGCAAUAACGACAGCAUCGACUGCGCC-CGGAA-----------------------AAUGUCUGGAC-----GGUCUUUCAAGGAC-GUGGGUUCAAUUCCUGC-C-UCUCCACua Propi_acnp1 Propi_acnp2 gagcugu------agugca--gcguuuuccggacGGU----UGUUCCAGGAGAAGUGGGG--UGAGG-GCCCAGGGUCAACUUG----UUAAC------GAUCGUUGG-GAAUCUAUAAGUGCCGAGAAUACUCGC---------------------------------------------------ACUGACUUCGCUCUUGCUGCCUGA------------------------UCAGUGAUCGAAG-----------------------GGUCAGCCCGGAUU-----------------------------------CUGGUUUCGUUGC---------------------------------------------------------GAUGACUU----GCCGCCCAGUUGU------------UGUCGUGGUGACUGGGCGGAAUUAUUU---CUACGAUCG------AGUUUGU--UUGCACCAUGUCGGUGUGAGUGCAGGAGCC----GAGCAAUAACGACAGCAUCGACUGCGCC-CGGAA-----------------------AAUGUCUGGAU-----GGUCUUUCAAGGAC-GUGGGUUCAAUUCCUGC-C-UCUCCACua Propi_acnp2 Stmyc_coeli GGGGAUG------AUCGGU--UUCGACAGCGGCUGUC-----GAAGCAGGGGAAGCGUGU--CGAGGAAGCGGCCAUGAUCUCGUAAACCAC-------AGGCCG-----AAAAAAUAAUCGCCAACACCAAGCGC---------------------------------------GAUUCCUCCCAGCAGGCCUUCGCCCUCGCUGCCUGA---------------UCUCAGGUAGCGAAGCGAGCCUCCUACUAAGGGAG----------UGUCAGCCCGGGGCU------------------GUUCCCGACCCGGAUCCUGGCAUCAGCUA---------------------------------------------------------GGGGACUAA---ACCUUGAUCCC--------------GGUCACGGGGUGAAGAGGGAAACCAAACA---GUGACUG------GGCCCGU--CGGAGACUUGUCCGCGUGAUCUCCGGGGCC----GAGAAAAU-CGAA---GCGGACUGCACA-CGGAG-----------------------AAGCCCUGAUU-----CCGCACCGUUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACga Stmyc_coeli Stmyc_livid GGGGAUG------AUCGGU--UUCGACAGCGGCUGUC-----GAAGCAGGGGAAGCGUGU--CGAGGAAGCGGCCAUGAUCUCGUAAACCAC-------AGGCCG-----AAAAAAUAAUCGCCAACACCAAGCGC---------------------------------------GAUUCCUCCCAGCAGGCCUUCGCCCUCGCUGCCUGA---------------UCUCAGGUAGCGAAGCGAGCCUCCUACUAAGGGAG----------UGUCAGCCCGGGGCU------------------GUUCCCGACCCGGAUCCUGGCAUCAGCUA---------------------------------------------------------GGGGACUAA---ACCUUGAUCCC--------------GGUCACGGGGUGAAGAGGGAAACCAAACA---GUGACUG------GGCCCGU--CGGAGACUUGUCCGCGUGAUCUCCGGGGCC----GAGAAAAU-CGAA---GCGGACUGCACA-CGGAG-----------------------AAGCCCUGAUU-----CCGCACCGUUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACnn Stmyc_livid Stmyc_scabi GGGGAUG------AUCGGU--UUCGACAGCGGAUGUC-----GAGGCAGGGGAAGCGUGU--CGAGGAAGCGGCCACGAUCUCGUUAACCAC-------AGGCCG----AAAAAAAUAAUCGCCAAUUCCAAGAGC---------------------------------------GAUUCUCCGCAGCAGCAGUUCUCCCUCGCCGCCUGA---------------UCUCAGGUAGCGACGAGACUGCUCCUGCACUAAGGAG--------UGUCAGCCCGGGGCU------------------GUUCCCGACCCGGAUCCUGGCAUCAGCUA---------------------------------------------------------GGGGACUAA---ACCUUGAUCCC--------------GGUCACGGGGUGAAGAGGGAAAUCUAACA---GUGACUG------GGCCCGU--CGGCGACUUGUUCGCGUGAUCGCCGGGGCC----GAGAAAAU-CACA---GCGAACUccccg-gcuga-----------------------cagcgcgggcg-----agcacggcgcgccg-gguggcgggaugaccgc-acuccccacgc Stmyc_scabi Stmyc_colli GGGGAUG------AUCGGU--UUCGACAGCGGAUGUC-----GAAGCAGGGGAAGCGUGU--CGAGGAAGCGGCCAUGAUCUCGUAAACCAC-------AGGCCGA----AAACAAUAAUCGCCAACACCAAGCGC---------------------------------------GAUUCCUCCUCG------UUCGCCCUCGCUGCCUAA---------------UUAGCAGCUAGCGA--------ACUCUCAUAGGAG----------UGUCAGCCCGGGGCU------------------GUUCCCGACCCGGAUCCUGGCAUCGACUA---------------------------------------------------------GGGGACUAA---ACCUUGAUCCC--------------GGUCACGGGGUGAAGAGGGAAACCAAACA---GUGACUG------AGCCCGU--CGGAGACUUGUCCGCGUGAUCUCCGGGGCC----GAGAAAAG-CGAA---GCGGACUGCACA-CGGAG-----------------------AAGCCCUCCUU-----CCGCACCGUUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACCA Stmyc_colli Stmyc_aureo GGGGAUG------AUCGGU--UUCGACAGGGGAUGUU-----GAAACAGGGGAAGCGAGC--CGAGGAACGCGGCAAUGAUCUCGUUAACCAC------GUGUCGCA---AAAAAAUAAUCGCCAACUCUAAGCGC---------------------------------------GAUUCCCAGCAG------UUCGCUCUCGCUGCCUAA---------------UAAGCACCGAUAGCG--------------CUUGGG----------UGUCAGACCGGGGA-------------------GUUCCCGACCCGGACCCUGGCAUAAUCUA---------------------------------------------------------GGGAACUCA---ACCGUCCGCCCG-------------GGCUGCGGGGGCGGAUGGGAAAUCAAACA---GCAGCUG------GGCCUGU--UGGCGGCUUGUCCGCGUGACCGCCAGGGCC----GAGAAAAG-CACA---GCGGACUGCGCU-CGGAG-----------------------AAGCCCUGAAU-----UAACUCCACUGGAC-CCGGGUUCGAUUCCCGC-CAUCUCCACCA Stmyc_aureo Stmyc_averm GGGGAUG------AUCGGU--UUCGACAGCGGCUGUU-----GAAGCAGGGGAAGCGUGU--CGAGGAAGCGGCAAUGAUCUCGUAAACCAU-------AUGUCGC----AAAAAAUAAUCGCCAAUACCAAGAGC---------------------------------------------GAUUCCCAGUCCUUCGCCCUCGCUGCCUAA-------------------UAAGCAGUGAGUGAGGGACCCUUAAUGGG------------UGUCAGCCCGGGAGU------------------GUUCCCGACCCGGACCCUGGCAUAAUCUA---------------------------------------------------------GGGGACUAA---ACCAUCGAGCCC-------------GGUCACGGGGUUCGAUGGGAAAUCAAACA---GUGACUG------GGCCCGU--CGGCGACUUGUUCGCGUGAUCGCCGGGGCC----GAGAAAAU-CGCA---GCGAACUGCACA-CGGAG-----------------------AAGCCCUGAUU-----CUGCACCGGUGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACga Stmyc_averm Thbif_fusca GGGGGUG------AUCGGU--UUCGACUUCGAUGGUU-----GUUGUAGGGGAAGCGGGC--CGAGGAGAGCGGACGCAGCCUCGUUAAAAA-------UGCGACCGC-GAAAAAAUAAGUGCCAACUCUAAGCGC---------------------------------------------------ACUGAGUUCGCUCUCGCUGCUUGA------------------------UCGAG-AGUGACUC----------------------UGUCGGCCUGGGAGC------------------GUCUCCGACCCAGUGUCCGGCAUCGUUGA---------------------------------------------------------GGAGACUU----GCCGGUCAGAUCA------------GGCCACAGGAUCUGACUGGGACAUGCUC---UGUGGCUG------GGCCUGU--CGGCGACUUGUCUGCGUGAGCGCCGGGGCC----GAGGAGAACGCUGA--GCAGACUGCGCC-CGGAG-----------------------AAGCCCUGCUG-----CAGCAUCGAAGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACgc Thbif_fusca Kineo_radio GGGGAUG------ACAGGU--UUCGACGUUGGUCGUC-----GAGCCAGGGGAAGCGGGU--CGAGG-AUGCAUGGUCAUCUCG----UCAACGA----UCCAUGCA---AACCAAUAGGUGCCGAUUCCAAGCGC---------------------------------------------------ACCGAGUUCGCCCUCGCCGCCUGA------------------------GCGAG-CGCGACUC----------------------UGUCAGCCCGGGUGA------------------GCUCCCGCCCCGGGUCCUGGCAUCGACUA---------------------------------------------------------GGGGGCUC----ACCUCUCACCGAG------------GUCGCGUAGGUGAG-AGGGACAAUCA----ACGCGGCUG------GGCCCGG--CGAUGACAUGCCUGUAUGAGCAUCGGGGCC----GAGCAGACCGCUGA--ACAGGAUGCACC-CGGAG-----------------------AAGCCCUGGUA-----CCACGCUGACGGAC-GCGGGUUCGAUUCCCGC-CAUCUCCACuc Kineo_radio Frnkia_CcI3 GGGGGUG------ACCGGC--UUCGACUCCGGACGUC-----GAGGCAGGGGAAGCGGGC--CGAGG-AUGAGCGGUUAUCUCG----UUAACGA----UCCGUUCA------GAACAACAGCUGCCAACAAGACG---------------------------------------CAGCCCACUACCCCCACUUACGCGCUCGCCGCUUAA------------------------GAGGG--ACUAGGUAGU-------------------CGUCAGCCUGGGAGA------------------GCCUCCGGCCCAGAAUCUGACGUCG-CUA---------------------------------------------------------GGAGGAUC----ACCGGCUGACCUG------------GUCGCGGGGUCGGU-CGGGACAUCAAA---CAGCGACUG------AGCCUAU---GUCGGCUUGCCUGCGUGUCCGACGAGGCU----GAGAAACA-AGUA---GCAGGAUGCGCC-CGGAG-----------------------AAGCCCUGUGU-----CGGGGCCGGAGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACaa Frnkia_CcI3 Frnkia_EAN1 GGGGGUG------ACCGGC--UUCGACUCCGGACGUC-----GAGGCAGGGGAAGCGGGC--CGAGG-AUGAGCGGUUAUCUCG----UUAACGA----UCCGUUCA------GAACAACAGCUGCCACUAAGACG---------------------------------------CAGCCUGCUAGCUCCACUUUCGCCCUCGCGGCCUGA------------------------GUAGA-GACCAACUAGC-------------------CGUCAGCCUGGGAGU------------------UCCUCCGGCCCAGGAUCUGGCGUCG-ACA---------------------------------------------------------GGAGGAUC----ACCGUCCCACCCG------------GUCGCGGGGUAGGU-CGGGAAAUCUAA---CAGCGACUG------AGCCUGC---GCCGGCUUGCCUGCGGGACCGGCGGGGCU----GAGAAAAA-ACAA---GCAGGCUGCGCC-CGGAG-----------------------AAGCCCUGUGU-----CGGGGCCGGAGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACCA Frnkia_EAN1 Bifid_long1 GGGGGCG------AUCGGU--UUCGACGGUGACCUGU----UCGCUGCAGGGAAGCGUGC--CGAGA-ACGCCGGGUCCGCUCG---UGGAU-------GACCCCGGCA-AAAGAAUAAGUGCUAAAUCUAACCGC---------------------------------------------------ACUGAGUUCGCUCUCGCUGCCUGA-------------------UUUUUAGUCAGGAUUAACCAGUGAGCAGC------------CGCUCCGUUCACUCCUCCUC-------------GUCUUUGGGAGGAUGCUGAGCGUCGUUU---------------------------------------------------------AGAAGACUU----GCUGAUGCAGUUGA-----------GCCUCAGGGCUGCAUCGGGACUUUAA----CUGCGGAUA-------UGCUCGCCAUCAGUUGUCUGCGACAUCGAUGGGGGCAGAAAAAUCGCCAACUUGGCCAGCAGACUACGCA-CGUAG-----------------------AAGACUGUGGG-----UUCGGUCAUCGGAC-CGGGGUUCAAUUCCCCG-CGCCUCCACCA Bifid_long1 Bifid_long2 GGGGGCG------AUCGGU--UUCGACGGUGACCUGU----UCGCUGCAGGGAAGCGUGC--CGAGA-ACGCCGGGUCCGCUCG---UGGAU-------GACCCCGGCA-AAAGAAUAAGUGCUAAAUCUAACCGC---------------------------------------------------ACUGAGUUCGCUCUCGCUGCCUGA-------------------UUUUUAGUCAGGAUUAACCAGUGAGCAGC------------CGCUCCGUUCACUCCUCCUC-------------GUCUUUGGGAGGAUGCUGAGCGUCGUUU---------------------------------------------------------AGAAGACUU----GCUGAUGCAGUUGA-----------GCCUCAGGGCUGCAUCGGGACUUUAA----CUGCGGAUA-------UGCUCGCCAUCAGUUGUCUGCGACAUCGAUGGGGGCAGAAAAAUCGCCAACUUGGCCAGCAGACUACGCA-CGUAG-----------------------AAGACUGUGGG-----CUCGGUCAUCGGAC-CGGGGUUCAAUUCCCCG-CGCCUCCACCA Bifid_long2 Rbrbr_xylan GGGGGCG-----AUCCGGC--UUCGACGGGAGCGGAC----AGCGUCCGGUGAGACGAGC--CGAGU-UCGCCGGAG--ACUCG---UAAAA-------CGCCGGCACC-UAAACAUACACGCCAACGACAGAGAG---------------------------------------------------------AUGGCGCUGGCUGCCUAA---------------------AACCACUGGCAGCC-------------------------CGUCGGUCCGGGCG-------------------GCCCACGGCCCGGUUUCCGGCGUCGGUU---------------------------------------------------------AGUGGGCUU----ACCUCCCGGGCUCC-----------GGCCCGGGGUCCGGGGGGGACACCACAG--CAGGGCUAG------CCCCUCUGCG------GCGCCCCGGUC--CGCAGAGGCC----GGUGAAGCUAAA--CCGGGUGCGACGCU-CGUAC-----------------------AAUCUCCCGGA---UGGCGCGCUCGCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACug Rbrbr_xylan