Beta-Proteobacterial tmRNA Alignment 15-Feb-2006 by Kelly Williams for The tmRNA Website, with base-pairing color-coded as in home page diagram. Underline marks the predicted reading frame for the proteolysis-inducing peptide tag. Lowercase marks segments not homologous to tmRNA, intervening segments that are absent in the mature tmRNA, and portions of the expected 3-prime CCA tail that are not encoded in the genome. unclassified Betaproteobacteria Tremb_prin1 GGGGAUG-----ACAGGGA--UUCGACACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAAC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCAAGUAAUAGG------------------UUCACCAUUGUGGCUAACGAUUGCAUCGACGCGUUAGUCAGAAGAGCAGUGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGGU-ACACUGAGGGACUAGGCUGACGG-UCAUAGUGCGACUGUAAACAAAGCA-UGUUG----------------------UGCACCCCACA------CCUCCCUGCUGGAC-GUGGGUUCAAUUCCCAC-CAUCUCCAggc Tremb_prin1 Tremb_prin2 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAGC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCGAGUAAUAGG------------------UUCACCAUGGUGGCUAACGAUAGAACUUUCGCGUUGGUCGGAAGAGCAGCGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGGUUAUACUGAUGGACUAGGCUGACGG-UCAUAGUGCGACUGUAAACAAAGCA-UGUGG---------------------UCGCACCCCACA-----CCCUCCCUGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin2 Tremb_prin3 NNNNNNN-----NNNNNNN--NNNNNNACGGGGU-------AAGGGUUGGGGUGCCAUGC--CGAGC--CGCCCUAC--GUAAA-----------------GGGCA-------CGAACGGUGCACCACGCAAUAGG------------------UUCACCAUGGUGGCUAACGAUAGCAUGUUCGCGUUGGCUGGAAGAGCAGCGGUGUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUGACGAC-CCACUGAUGGAAUAGGCGGCCGA-GCACAUGGCGAUAGUAAACGAAGCA-UGUCG----------------------AGCAGUCCACC------CAACCCCGAUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin3 Tremb_prin4 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAGC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCAACGAGUAACAGG------------------UUCGCCAUGGUGGCUAAUGAUUGCCAGUUCGCGUUAGUCGGAAGAGCAGCGGUGUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGGU-AUACUGAUGGACUAGGCUGACGG-UCAUAGUGCGACUGUAAACAAAGCA-UGUUG----------------------UGCACCCCCCA----CACCUCCCUGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin4 Tremb_prin5 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAGC--AGCCCAAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCAAGAAAUAGG------------------UUCACCAGGGUGACUAACGACAGCAAGUUCGCGUUGGUCGGAAGAGCAGCGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCGAAGAU-ACACUGAAGGACUAGGCUGACGGGUCAUAGUGCGACUGUAAACAAAGCA-UGUUG----------------------UGCACCCCACA------CCUCUCCGCUGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin5 Tremb_prin6 NNNNNNN-----NNNNNNN--NNNNNNACGGGGC-------AAGGGAUGGGGUGCCAUGC--CGAGC--AGCCCUAC--GUUAG-----------------GGGCA-------CGAAAGGUGCACCAAGUAAAAGG------------------UUCACCAUGGUGACUAACGACAGCAAGUUCGCGUUGGUCGGAAGAGCAGCGGUAUAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCUAAGAU-ACACUGAAGGACUAGGCUGACGGGUCAUAGUGCGACGGUAAACAAAGCA-UGUUG----------------------UGCACCCCAUC------CCUCUCCGCUGGAA-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Tremb_prin6 Neisseriales Neiss_gono1 NNNNNNN----NNNNNNNN--NNNNNNGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCAGCCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Neiss_gono1 Neiss_gono2 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGU----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCAGCCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_gono2 Neiss_lacta GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCAGCCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUCCCU-AAAGGCCUGUCGGUCGGCAUGA-CGGGGAU---AAGAU-UCCAAAUA--GAUACGACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_lacta Neiss_meni1 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCUGCCGG-------------GUUAUUUGGCAGGAAAU----GAGAUUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni1 Neiss_meni2 GGGGGCG----ACCUUGGU--UUCGACGAGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCUACCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni2 Neiss_meni3 GGGGGCG----ACCUUGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGCGGGCAUAC--CGGGG-UCUCAG-AU--UCCCGUAAAACA----------CUGAA---UUCAA-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUUUAGCCGCUUAA--------------------------GGCUAGC---------------------------CGUUGCAGCAGUCG-------------------GUCAAUGGGCUGU----GUGGC----------GAAA-------------------------------GCCACCGCAACGUCAUCUUACAUUGACUG--GUUUCCUACCGG-------------GUUACUUGGCAGGAAAU----AAGACUUAAGGUAAC-UG------GUUUCCA-AAAGGCCUGUUGGUCGGCAUGA-UGGAAAU---AAGAUUUUCAAAUA--GACACAACUAAGUA-UGUAG----------------------AACGCUUUGUAG------AGGACUUUCGGAC-GGGGGUUCGAUUCCCCC-CGCCUCCACCA Neiss_meni3 Chrbm_viol1 NNNNNNN----NNNNNNNN--NNNNNCGGGGGUUGC-----GAAGCAGAUGAGGGCAUAC--CGGGA-UUUCAGUCA--CCCCGUAAAAC----------GCUGAA---UUUAU-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUGGCAGCCUAA---------------------CGGCCGGCCAGA---------------------------CACUACAACGGUUC-------------------GCAGAUGGGCCGG----GGGCG----------UCAA-------------------------------AACCCUGUAGUGUCACUCUACAUCUGCUA--GUGCUGUUCCGG-------------GUUACUUGGUUCAGUGC----GAAAUAAUAGGUAAC-UC------GCCAAAG-UCCAGCCUGUCCGUCGGCGUGG-CAGAGGU---UAAAU--CCAAAU---GACACGACUAAGUA-UGUAG----------------------AACUCACUGUAG------AGGACUUUCGGAC-GCGGGUUCAACUCCCNN-NNNNNNNNNNN Chrbm_viol1 Chrbm_viol2 GGGGGCG----ACC-UGGU--UUCGACGGGGGUUGC-----GAAGCAGAUGAGGGCAUAC--CGGGA-UUUCAGUCA--CCCCGUAAAAC----------GCUGAA---UUUAU-AUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUGGCAGCCUAA---------------------CGGCCGGCCAGA---------------------------CACUACAACGGUUC-------------------GCAGAUGGGCCGG----GGGCG----------UCAA-------------------------------AACCCUGUAGUGUCACUCUACAUCUGCUA--GUGCUGUUCCGG-------------GUUACUUGGUUCAGUGC----GAAAUAAUAGGUAAC-UC------GCCAAAG-UCCAGCCUGUCCGUCGGCGUGG-CGGAGGU---UAAAU--CCAAAU---GACACGACUAAGUA-UGUAG----------------------AACUCACUGUAG------AGGACUUUCGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Chrbm_viol2 Nitrosomonadales Uncultu_U02 NNNNNNN-----NNNNNNN--NNNNNNGUGGAUUGC-----AAAGCUAUCGAGGGCGUGU--CGAGG--AUCAGUUA--CCUCGUAAAUCCA--------UCUGAA---AAACA-GUAAACGCAAACGACGAACAG---------------------------------------------------------UUUGCUCUAGCAGCUUAA---------------------UCGCUCGCUAGA---------------------------UCUCACACCAGCUU-------------------GCCGAUGGGCUGG----GCAGGG---------UCAA------------------------------ACCUGCAGUGGGAUCAUCGCACAUCGGAUC--GCUGCGUGCAGG-------------GUUGCGAUGCAAGUGGC----UAAAUCAA--GCGAC-UC------GCGGUUGUCGUAGGGUGUCCCCUCCCGACAAUGAUCGU---UAAAA--CCAAAUAA-GAC--GACUACACA-CGUAG----------------------AACUUGUAGUGG------AGGAUUUGCGGAC-GUGGNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_U02 Nisom_europ GGGGGCG----AUC-CGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--UUCAGUAC--CCUCGUAAAACA---------GCUGAA---AAAAA-AUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCCGCUUAA-----------------------UCCGGCUAAA---------------------------CUCCACACCGGUGG-------------------GCCUCAACGCCGG----GUCUG----------GCAA-------------------------------CAGACAGUGGAGUCAU-UAAC-GAGGAUC--GCGUUUUGCAGG-------------GUUACUUUGCAGAGCGC----UAAAAAAUAGGUAAC-UC------GCCUGUC-AUCAGCCUGCCGGUUGGCGGAU-GCCAGGU---CAAAU---UAAAU---AACAUGGCUAAGUA-UGUAG----------------------AACUGUCUGUAG------AGGACUUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Nisom_europ Nisom_cryot NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--ACCAGAAUA-CCUCGUAAAUACA--------UCUGGA---AAAAA-AUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUUUAGCCGCUUAA-----------------------UACGGCUAGC---------------------------CUCUGCACCGAUGG-------------------GCCUUAACGUCGG----GUCUG----------GCAA-------------------------------CAGACAGCAGAGUCAU-UAGC-AAGGAUC--GCGUUCUGUAGG-------------GUCACUUUACAGAACGU----UAAACAAUAGGUGAC-UC------GCCUGCC-AUCAGCCCGCCAGCUGGCGGUU-GUCAGGU---UAAAU---UAAAG---AGCAUGGCUAAGUA-UGUAG----------------------AACUGUCUGUAG------AGGACUUGCGGAC-GCGGGUUCAACUCCCNN-NNNNNNNNNNN Nisom_cryot Nissp_multf GGGGGCG-----ACUUGGC--UUCGACGUGGGUUGC-----AAAACAGAGCAGGGCAUAC--CGAGG--ACCAGUUA--CCUCGUAAAUACA--------UCUGGA----AACCAAUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------AUCCGGCUGGA---------------------------CUCCGCACCGGUGG-------------------GCCUCAACGCCGG----GUCUG----------GCAA-------------------------------CAGACAGCGGAGCCAU-UAAC-GAGGAUC--GCGCCCGGUAGG-------------GUUACUUUACAGGGCGU----UAAACAAUAGGUGAC-UC------GCCUGCC-AUCAGUCCGCCGGUUGACGGAU-GCCAGGU---UAAAU---UAAAA---AACAUGGCUAAGUA-UGUAG----------------------AACUGCCUGUAG------AGGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CGCCUCCACCA Nissp_multf Uncultu_U04 NNNNNNN----NNNNNNNN--NNNNNNGUGGGUUGC-----AAAGCAGUGCAGGGCAUAC--CGAGG--ACUAGUCA--CCUCGUAAAUCC---------ACUGGA--ACAAGUUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------UCCCGGCUGGA---------------------------CGCUGCACCGGAGG-------------------GCCUCUCGGCCGG----GCGGA----------GCAA-------------------------------UCCGCAGCAGCGUCAU-AUAGAGAGGAUC--GUNNNNNNNNNN-------------NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NN------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNN---NNNNN--NNNNNN---NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncultu_U04 Methylophilales Mebcl_glyco NNNNNNN----NNNNNNNN--NNNNNCGGGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--CCUAGUCA--CCUCGUAAAUAA---------ACUAGA---ACAAGUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------UCCCGGCUGGA---------------------------CGCUGCACCGAAGG-------------------GCCUCUCGGUCGG----GUGGG----------GUAA-------------------------------CCCACAGCAGCGUCAU-UAAGAGAGGAUC--GUGCGAUAUUGG-------------GUUACUUAAUAUCGUAU----UAAAUCCAAGGUAAC-UC------GCCUGCU-GUUUGCUUGCUCGUUGGUGAGC-AUCAGGU---UAAAU---CAAAC---AACACAGCUAAGUA-UGUAG----------------------AACUGUCUGUGG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCNN-NNNNNNNNNNN Mebcl_glyco Mebcl_flage GGGGCCG----ACC-AGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--CCUAGUCA--CCUCGUAAAUAA---------ACUAGA---ACAAGUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------UCCCGGCUGGA---------------------------CGCUGCACCGGAAG-------------------GCCUCUCGGCCGG----GCGG-----------GUAA--------------------------------CCGCAGCAGCGUCAU-UUAGAGAGGAUC--GUGUUGUAUUGG-------------GUUACUUAAUACAACAU----UAAAUCCAAGGUAAC-UC------GCCUGCU-GUUCGCUUGCUCGUUGGUGGGC-AUCAGGU---UAAAU---CAAAC---AACACAGCUAAGUA-UGUAG----------------------AACUGUCUGUGG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Mebcl_flage Uncul_farm7 GGGGGUG----ACCCCGGU--UUCGACGUGGGUUAC----AAAGCAGUGCAGGGGCAUAC--CGAGG--ACCAGUCA--CCUCGUAAAACA---------ACUGGA---AAAAGUAUAGUCGCAAACGACGAAACU---------------------------------------------------------UACGCUCUAGCCGCUUAA----------------------UACCGGCUGGA---------------------------CGCUGCACCGAAGG-------------------GCCU-UCGGUCGG----GCAGG----------GCAA-------------------------------CCUGCAGCAGCGUCAU-AAAGAGAGGAUC--GUGCCGUACCGG-------------GUUACUUGAUACAGCAU----UAAAUCCAAGGUAAC-UC------GCCUUGC-CUCAGCCUGCCGGUUGACGGUU-GCAAGGU---CAAAU---CAAAU---AACCAGGCUAAGUA-UGUAG----------------------AACUGUCUGUAG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CACCUCCACCA Uncul_farm7 Uncul_poln1 GGGGACG----ACC-UGGU--UUCGACGUGGGUUGC-----AAAGCAGCGCAGGGCAUAC--CGAGG--GCGGGCUA--CCUCGUAAAUACA--------ACCUGA---AAAAACUUAACUGCAAACGAUAACUCG---------------------------------------------------------UACGCACUGGCAGCUUAA-----------------------UUGCUGUUAG---------------------------CUCUAGAACACCUC-------------------GUCCCUGGGGUGG----GCCG-----------UUAA--------------------------------NNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NN------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNN---NNNNN---NNNNN---NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_poln1 Rhodocyclales Azoarc_BH72 GGGGCCG----ACC-UGGC--UUCGACGUGGGUCGC-----GAAGCAGUGCAGUGCAUAC--CGAGG--ACCAGUCA--CCUCGUAAAUCCA--------UCUGGG---AAACU-ACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA----------------------UCCCGGCGGG----------------------------CGCUGCACCGGCAG-------------------GUCUCUGGGCCGG----GUGGUUCCAGC----GUAA----GCU----------------------GGGCCGCUGCAGUGUCAU-UUACAGAGAAUC--GCGAGCAGGGCCGG-----------GUUACUUGGCUCUGUAGC---UAAAGGUAAGGUAAC-UC------GCUGAUG-ACCGGCCUGCCGACCGGCUAAGUCAGAGGC---UAAAU--CCAAAUA--GGU-CGGCUAAGUA-UGUAG----------------------AGCUGUCUGUAG------AGGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Azoarc_BH72 Azoarc_EbN1 GGGGGUG----CAC-CGGU--UUCGACAGGGCGGGC------AAUGGUGAGCAGGCAACC--CGAG---AGGCGACG---GACGUAAUC-----------CGCGCA---AAUCC-ACAAACGCCAACGAUGAGCGU---------------------------------------------------------UUCGCUGUAGCCGCUUAA------------------------GGCAACAGC---------------------------CGGGGCC--------------------------GCCUG-------------------------------------------------------------------AGCCCUGUUAC-CAAAGA-CGGC---UGGCGGGGGCUUCG------------------GCCCCCGCU-UCA*******************************************************************************************AUGGU-UGUAA--------------------UUCCGGCAACCCGG------AGACGUUCUGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACag Azoarc_EbN1 Decmo_aroma GGGGGUG----UAC-UGGU--CUCGACAGGGCGGAC------AAAGGUGCGCAGGCAACU--CGUC---AGGCGAUC---GACGUUAAU-----------GAAGCA---AAUCC-AUAAUUGCCAAUGAUGAGCAA---------------------------------------------------------UUCGCUAUUGCCGCCUAA----------------------AAACGGUUAGC---------------------------CGGGGCU--------------------------GCUAG-------------------------------------------------------------------AGCCUUGUUAC-CAAAGAUAGC----CGGCGGGGACUUCG------------------GUCCCCGUCGUCA*******************************************************************************************AUGGU-UGUAA--------------------UUCCGGCAAUCUGG------AGGCGUUCUGGAC-AGGGGUUCGAUUCCCCU-CACCUCCACCc Decmo_aroma Decmo_agita GGGGGUG----UAC-UGGC--UUCGACAGGGCGGGC------AAAGGUGCGCAGGCAACC--CGAG---AGGUGACG---GACGUAAUC-----------CGCACA---AAUCC-AUAAUUGCCAAUGAUGAGCAA---------------------------------------------------------UUCGCUAUCGCCGCCUAA----------------------AAACGGCUAGC---------------------------UGGGGCC--------------------------GCUGA-------------------------------------------------------------------AGCCUUAUUAC-CCAAGACAGC----CGGCNNNNNNNNNN------------------NNNNNNNNNNNNN*******************************************************************************************NNNNN-NNNNN--------------------NNNNNNNNNNNNGG------AGGCGUUCUGGAC-AGGGGUUCGAUUCCCCU-CACCUCCACCc Decmo_agita Azosp_oryza GGGGGUG----UAC-UGGC--UUCGACAGGGCGGGC------AAAGGUGCGCAGGCAACU--CGUC---AGGCGAUC---GACGUUAAU-----------GAAGCA---AAUCU-CCAAACGCCAACGAUGAGCGU---------------------------------------------------------UUCGCAAUCGCCGCUUAA------------------------GGCUUUUGC---------------------------CGAGGCU--------------------------GCUUG-------------------------------------------------------------------AGCCUUGUUAC-CAAAGAAAAGC---CGGUNNNNNNNNNN------------------NNNNNNNNNNNNN*******************************************************************************************NNNNN-NNNNN--------------------NNNNNNNNNNNNGG------AGGCGUUCUGGAC-GCGGGUUCGAUUCCCGC-CACCUCCACCu Azosp_oryza Hydrogenophilales Thibl_denit GGGGCCG----ACC-UGGC--UUCGACGUGGGUCGC-----AAAGCAGCGUAGGGCAUAC--CGAGG-GUCAGAGCA--CCUCGUAAAUCC---------AACUGA---AAAACUUUAGUCGCAAACGACGAAAAC---------------------------------------------------------UACGCCCUGGCCGCUUAA------------------------GGUCCAGG----------------------------ACUCACACUAGCCU-------------------GUUCAUGGGCUAG----GCCGGG---------UCAA------------------------------ACCGGCAGUGAGUUAAU-UCACAUGAAAUC--GCGCUUGUCCGG-------------GUCGCUUGGGCAGGUGC----UAAAUCCAAGGCGGC-UC------GGCGAAA-UCCAGCCUGUUCGGCGGGCGUGAUGGAGCU---UAAAGCUUAAAAA---CACCGGACUAAGUA-UGUAG----------------------AACUGCCUGUAG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Thibl_denit Burkholderiales Comam_testo GGGGCCG----AUUCUGGA--UUCGACGUGGGUUCG-----GGACCGGUGCGGUGCAUGU--CGAGC-UUGAGUGAC--GCUCGUAAAUCUC--------CAUUCA---AAAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA-----------------------UCCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUAGUGGGCUGG----GCAAGGGGGUA----GCAA----UACC---------------------UCCCGGCUGCAAGGGAAU-UUUCAUUAGCUG--GCUGGAUACCGG-------------GCUUCUUGGUAUUUGGC----GAGAUUUUAGGAAGC-UG------GCUACCCAAGCAGCGUGUGCCUGCGGGGUUUGGGUGGU---GAGAU--UUAAAA---CAGAGCACUAAACA-UGUAG----------------------AUCUGUCCGGCG------AAGGCUUACGGAC-GCGGGUUCAAUUCCCGC-CGGCUCCANNN Comam_testo Uncul_srat1 GGGGCUG-----UCCUGGU--UUCGACGUGGGUUCG-----GGACCGGUGUGGUGCAUGU--CGAGC-UUGAGUGAC--GCUCGUAAAUCUC--------CAUUCA---AAAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA----------------------AUCCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUGAUGGGCUGG----GCAAGGGGGUA----GCAA----UACC---------------------UCCCGGCUGCAAGGGAAU-UUACAUCAGCUG--GCUGCGUGCUGG-------------GCUUCUUAGUACGUGGC----AAGAUCCAAGGAAGC-UG------GCAUCCCGGGUAGCGUGCGCCUGCGCGACUUGGGAGGC---GAGAC--UCAAAA---CAGAACGCUAAACA-UGUAG----------------------AUCUGCCCGGCG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_srat1 Uncul_rice2 GGGGCUG----CCC-UGGU--UUCGACGUGGGUUCG-----GAAUCGGUGUGGUGCAUGU--CGAGC-UUGAGUGGC--GCUCGUAAAUCU---------GCAUUCAA--CAAA-CCAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA---------------------ACACCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUGACGGGCUGG----GCAAGGGGGCC----GCAA----GGCC---------------------UCCCGGCUGCAAGGUUAU-UCACGUCAGCUG--GCCUCCUGCCGG-------------GUACCUUGGCAUGGGGC----GAGAUCCAAGGGUGC-UG------GCCUUCCUUGCAGCGUGCGACUGCGCGGCGUGGAAGGU---GAGAU--CCAAAA---CAGACCGCUAAACA-UGUAG----------------------AUCUGCCCGAAG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_rice2 Uncul_aede1 GGGGCUG----CCC-UGGU--UUCGACGUGGGUUCG-----GAAUCGGCGUGGUGCAUGU--CGAGC-UUGAUUGGC--GCUCGUAAAUCU---------GCAUUCAA--AAAA-CCAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA---------------------ACACCGGUGAG----------------------------CCUUGCAACAGCAC-------------------GCUGAUGGGCUGG----GCAAGGGGGCC----GCAA----GGCU---------------------UCCAGGCUGCAAGGGAAU-UCACAUCAGCUG--GUCUGGCGCCGG-------------GUACCUUGGCGUUGGGC----GAGAUCCAAGGGUGC-UG------GCAUUCGGCAUAGCGUGCGCCUGCGCGAUGACGGAAGC---GAGAU--UCAAAA---CAGAACGCUAAACA-UGUAG----------------------AUCUGCCCGAUG------AAGGCUUGCGGAC-GCGGGUUCAAUUCCCGC-CAGCUCCACCA Uncul_aede1 Polmo_JS666 GGGGCUG----CAC-UGGU--UUCGACGCGGGUACG-----GACGCGCAGUGGGGCAUGC--CGAGC---UUAGUGU--GCUCGUAAAACU---------GACUAA--AACAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCUGCUUAA---------------------UAACCAGUGAG----------------------------CCCUACAACAGCAG-------------------GCCGAUGGGCUGG---GCAAGGGGUCUUUAGCGCAAGUUGAAGG--------------------CUCCCGGCUGUAGGGUCAU-ACACAUCGGCUG--GCCUGGUACCGG-------------GCACCUUGGUAUCAGGC----GAGACAAUAGGAUGC-UG------GCAACCUGUAUAGCGUGCUGCUGCGCGAUACGGGAAGU---GAGAC--UCAAAU---CAGACGGCUAAGCA-UGUAG----------------------AACUACGCGAAG------AAGGCUUGCGGAC-GGGGGUUCAAAUCCCCC-CAGCUCCACCA Polmo_JS666 Varvx_parad NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUCG-----GAGUCGCAGCGGGGCAUGU--CGAGC---UGAAUGC--GCUCGUAAAACAG--------AUUCAA---ACAAA-CUAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCUGCUUAA---------------------UUGCCAGUGAG----------------------------CCUUGCAACAGUUG-------------------GCCGAUGGGCUGG----GCAAGGGGGUCUGGAGCAAUCCUGACC---------------------UCCCGGCUGCAAGGAUAA-CUACAUGGGCUG--GCUCCGAUCCGG-------------GUACCUUGGGUCGGGGC----GAGAAAAUAGGGUAC-UG------GCGUCCGGUUUAGCGUGUGACUGCGCGACUCCGGAAGU---GAGAC--UCAAAA---CAGAUCACUAAACA-UGUAG----------------------AACUGCGCGAUG------AAGGCUUGCGGAC-GGGGGUUCAACUCCCNN-NNNNNNNNNNN Varvx_parad Hydro_palle NNNNNNN----NNNNNNNN--NNNNNCGUGGGUUCG-----GACGCGCAGCAGGGCAUGU--CGAGG--UUCUGUCA--CCUCGUAAAUCA---------GCAGAA---AAAAA-CCAACUGCAAACGACGAACGU---------------------------------------------------------UUCGCACUCGCCGCUUAA---------------------ACACCGGUGAG----------------------------CCUUGCAACAGCAG-------------------GCCGAUGGGCUGG----GCAAGGGGGUC----GCAA----GACC---------------------UCCCGGCUGCAAGGUAAU-UUACAUCGGCUG--GUUCUGCGUCGG-------------GCACCUUGGCGCAGGAU----GAGAUUCAAGGAUGC-UG------GCUUCCCGUUUAGCGUGCCACUGCGCGACUCGGGCGGU---GAGAC--CCAAAU---CAGACGGCUACACA-UGUAG----------------------AACUGCUCGAAA------AAGGCUUGCGGAC-GGGGGUUCAACUCCCNN-NNNNNNNNNNN Hydro_palle Rubri_gelat GGGGCCG----ACC-UGGU--UUCGACGUGGGUGCG-----GAAUUGGAGUGGUGCAUGC--CGAGC--AUCAGUGA--GCUCGUAAAUCC---------AGCUGA---AACAAACCAACUGCGAACGACGAACGU---------------------------------------------------------UUCGCCCUCGCCGCUUAA---------------------ACACCGGUGAG----------------------------CGUCUCAACGGCAG-------------------GCCGAUGGGCCGG----GCCCAA--GCC----GCAA----GGU----------------------GGAAGGCUGAGACGUCAU-GCACAUCGGCUG--GUUGCUCGUCGG-------------GUCACUCGGCGUUCAAC----GAGAC-UC-AGUGAC-UG------GCGUUGUCCGUAGCGUGCUUCUGCGCGACG-GCGGCGU---GAGAC--UCAAAU---CAGACAGCUAAGCA-UGUAG----------------------AUCUACCUGAGG------AUGGCUUGCGGAC-GGGGGUUCGAUUCCCCC-CGGCUCCACCA Rubri_gelat Ralst_picke NNNNNNN----NNN-NNNN--NNNNNCGGGGGUUGC-----GAAGCAGCGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAACGACGAACGU---------------------------------------------------------UACGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCGCACUGGCUC-------------------GCUGACGGGCUAG----GGUC-----------GCAA-------------------------------GACCA-GCGAGGUCAU-UUACGUCAGAUA--AGCUUUAGGUGA-------------GUCACGGGCCUAGAGAC----GAAAA-CUUAGUGAA-UC------GCCGUCG-UAGAGCGUGUUCGUCCGCGAUG-CGGCGGU---UAAAU---CAAAU---GACAGAACUAAGUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCNN-NNNNNNNNNNN Ralst_picke Ralst_solan GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGUAGCGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---ACGCA-AUAACUGCUAACGACAACCGU---------------------------------------------------------UACCAGCUGGCCGCUUAA---------------------UUGCGCGCCGU----------------------------CCUCGCACUAGCUU-------------------GCCGAUAGGCUAG----GGCC-----------GCAA-------------------------------GGCCACGCGAGGUCAU-UCAUAUCGGAUC--GCUUCGGCCGGU-------------GUCACGACGGCCGGGGU----UAACU-CCAAGUGAC-UC------GUCGUCG-CGCAGCGUGUUCGUCCGCGUCG-CGCCGGU---UAAAU---CAAAU---GACUGAACUAAGUA-UGUAG----------------------AACGCUCUGUAG------AGGACUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_solan Cupri_necat NNNNNNN----NNN-NNNN--NNNNNCGUGGGUUAC-----AAAGCAGUGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAACGACGAACGU---------------------------------------------------------UACGCACUGGCCGCUUAA----------------------UUGCGGCCGU----------------------------CCUCGCACUGGCUC-------------------GCUGACGGGCUAG----GGUC-----------GCAA-------------------------------GACCACGCGAGGUCAU-UUACGUCAGAUA--AGCUCCGGAAGG-------------GUCACGAAGCCGGGGAC----GAAAA-CCUAGUGAC-UC------GCCGUCG-UAGAGCGUGUUCGUCCGCGAUG-CGCCGGU---UAAAU---CAAAU---GACAGAACUAAGUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUACGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Cupri_necat Uncul_zebu1 GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGCGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAANNNNNNNNNN---------------------------------------------------------NNNNNNNNNNNNNNNNNN----------------------NNNNNNNNNN----------------------------NNNNNNNNNNNNNN-------------------NNNNNNNNNNNNN----NNNNN----------NNNN-------------------------------NNNNNNNNNNNNNNNN-NNNNNNNNNNNN--NNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNN----NNNNN-NNNNNNNNN-NN------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNN---NNNNN---NNNNN---NNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_zebu1 Ralst_eutro GGGGCCG----ACC-UGGU--UUCGACGUGGGUUGC-----GAAGCAGUGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAACGACGAACGU---------------------------------------------------------UACGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCGCACUGGCUC-------------------GCUGACGGGCUAG----GGUUC----------GCAA-------------------------------GAACCAGCGAGGUCAU-UUACGUCAGAUA--AGCCCCGUCGGU-------------GUCACGACUGCGGGGAC----GAAAA-CCAAGUGAC-UC------GCCGUCG-UAGAGCGUGUUCGUCCGCGAUG-CGGCGGU---UAAAU---CAAAU---GACAGAACUAAGUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_eutro Ralst_metal GGGGCCG----ACC-UGGU--UUCGACGUGGGUUAC-----AAAGCAGUGGAGGGCAUAC--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AUGCA-AUAACUGCUAACGACGAACGU---------------------------------------------------------UACGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCGCACUGGCUC-------------------GCUGACGGGCUAG----GGUUC----------GCAA-------------------------------GAACCAGCGAGGUCAU-UUACGUCAGAUA--AGCUUCGGGAGU-------------GUCACGGGCCCGAGGAC----GAAAA-CCUAGUGAC-UC------GCCGUCG-UAGAGCGUGUUCGUCCGCGAUG-CGCCGGU---UAAAU---CAAAU---GACAGAACUAAGUA-UGUAG----------------------AACUCUCUGUGG------AGGGCUUGCGGAC-GCGGGUUCGAUUCCCGC-CGGCUCCACCA Ralst_metal Burkh_thail GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUGUCCGGC-------------GUCACGACGGCCAGGUC----GAAAA-UUGAGUGAA-UC------GCCGUAA-CGGAGCGUGUUCGUCCGCGACG-UCACGGU---UAAAU---CAAAC---GACAGAACUAAACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_thail Burkh_pseud GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUGUCCGGC-------------GUCACGACGGACAGGUC----GAAAA-UCAAGUGAA-UC------GCCGUAA-CGGAGCGUGUUCGUCCGCGACG-UCACGGU---UAAAU---CAAAU---GACAGAACUAAACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_pseud Burkh_malle GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUGUCCGGC-------------GUCACGACGGACAGGUC----GAAAA-UCAAGUGAA-UC------GCCGUAA-CGGAGCGUGUUCGUCCGCGACG-UCACGGU---UAAAU---CAAAU---GACAGAACUAAACA-UGUAG----------------------AACUGGUCGUGG------ACCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_malle Burkh_fungo GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGC-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUU-------------------ACUGACGGGCUAGA-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUUGGUGGU-------------GUCACGACAUCCGGGUC----GAAAA-UCUAGUGAA-UC------GCCGUAG-UGCAGCGUGUUCGUCCGCGUCG-CUACGGU---UAAAU---CAAAU---GACAGAACUAAACA-UGUAG----------------------AACUGGUCGUAG------AGUGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_fungo Burkh_cenoc GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAUC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------GGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-UUACGUCAGUUA--AGCCCUGUCGGC-------------GUCGCGACGCCAGGGUC----GAAAA-UCUAGCGAA-UC------GCCGUAG-UGCAGCGUGUUCGUCCGCGUCG-CUGCGGU---UAAAU---CAAAA---GACUGGACUAAACA-UGUAG----------------------AACUAGUCGUGG------AGCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_cenoc Burkh_vietn GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAAC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------CGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------ACAGAGGUCAU-AUACGUCAGUUA--AGCCUUGGCGGC-------------GUCGCGACGUCCGGGUC----GAAAA-CUUAGCGAA-UC------GCCGUAG-UGCAGCGUGUUCGUCCGCGUCG-CUGCGGU---UAAAU---CAAAU---GACUGAACUAAACA-UGUAG----------------------AACUAGUCGUGG------AGCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_vietn Burkh_sp383 GGGGGCG----ACC-UGGU--UUCGACAGGGGUUGU-----GAAGCGGCU-AGGGCAUGU--CGAGG--ACCCGUCA--CCUCGUUAAUCA---------AUGGGA---AAAUC-GUAACUGCAAACGACGAUACG---------------------------------------------------------UUCGCACUGGCAGCCUAA----------------------CGGCCGCCGU----------------------------CCUCUGCCUAGUUC-------------------ACUGACGGGCUAGU-----------GUC----GCAA----GAC--------CGGUAGCAAUACCG-------CCAGAGGUCAU-UUACGUCAGUUA--AGCCCUGUCGGC-------------GUCGCGACGCCAGGGUC----GAAAA-CCUAGCGAA-UC------GCCGUAG-UGCAGCGUGUUCGUCCGCGUCG-CUGCGGU---UAAAU---CAAAU---GACUGAACUAAACA-UGUAG----------------------AACUAGUCGUGG------AGCGCUUCUGGAC-GCGGGUUCGAUUCCCGC-CGCCUCCACCA Burkh_sp383 Alcal_visco NNNNNNN-----NNNNNNN--NNNNNNGUGGGUCGC-----GAAACAACUCAGGGCAUGC--CGAGC--ACCAGUAC--GCUCGUUAAACC---------ACUGGA---ACACU-ACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA------------------------GCGGUGAGC---------------------------CGCUGCACUGAUCU-------------------GUCCUUGGGUCAG-GCGG--------AGGAAGGCAACUUCCCA--------GGGGGGCAACCCUCGAACCGCAGCAGCGACAU-UCACAAGGAAUC-GGUUUGAACUGGG-------------GUCACA-CGGUUCAAAU----UUAAA-UUACGUGAA-UC------GCUCUGG-UCCGGCCUGUCGGUUGGCUAAGUCCAGGGU---UAAAA--CCAAAUA--GAU-CGACUACGCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGNNNNNNNNNNNNN-NNNNNNNNNNN Alcal_visco Uncul_root1 GGGGCCG----AUC-CGGA--UUCGACGUGGGUCGC-----GAAACAGUGCAGGGCAUGU--CGAGC--ACCAGUAC--GCUCGUUAAACC---------ACUGGA--AACACU-ACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA------------------------GCGGUGAGC---------------------------CGUAGCACUGAUCU-------------------GUCUUUGGGUCAG----GUGGG---------GUCAAA------------------------------CUCACAGCUACGACAC-UUACAAAGAAUC-GGGAUCUAGCCGG-------------GUCACACGCGUUAGGCC----UUAAAAAGAAGUGAA-UC------GCUGAGG-GCCGGCCUGUCGGUUGGCUAAGCCCGAGGU---UAANN--NNNNNNN--NNN-NNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNNNN Uncul_root1 Alcal_faeca NNNNNNN----NNN-NNNN--NNNNNCGGGGGUCAA-----GAAGCAGCACAGGGCGUGU--CGAGC--ACCAGUAC--GCUCGUAAAUCC---------ACUGGA---AAACU-AUAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUAGCCGCUUAA------------------------GGCUGGGC----------------------------CACUGCACUAAUUU-------------------GUCUUUGGGUUAG----GUAGG----------GCAA-------------------------------CCUACAGCAGUGUUAU-UUACAAAGAAUC--GAAUCGGUCUGC-------------GCCACGAAGUCCGGUUC----UAAAA-CUUAGUGGA-UC------GCCAAGG-AAAGGCCUGUCAAUUGGCAUAGUCCAAGGU---UAAAACUUAAAAUU--AAU-UGACUACACA-UGUAG----------------------AACUGUCUGUGG------ACGGCUUGCGGAC-GGGGGUUCGAUUCCCNN-NNNNNNNNNNN Alcal_faeca Uncul_humn2 NNNNNNN----NNN-NNNN--NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNN--NNNNN--NNNNNNNN--NNNNNNNNNNNN---------NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNN---------------------------------------------------------NNNNNNNNNNNNNNNNNN------------------------NNNNNNNN----------------------------NNNNNNNNNNNNNN-------------------NNNNNNNNNNNNN----NNNNN----------NNNN-------------------------------NNNNNNNNNNNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNU----UUAAA-UUACGUGAA-UC------GCUCUGG-UCCGGCCUGUCGGUUGGCUAAGUCCAUGGGU--UAAAA-CCUAAAUA--AAU-CGACUACGCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACaa Uncul_humn2 Borde_pertu GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGCUCAGGGCAUGC--CGAGC--ACCAGUAA--GCUCGUUAAUCC---------ACUGGA---ACACU-ACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA------------------------GCGGUGAGC---------------------------CGCUGCACUGAUCU-------------------GUCCUUGGGUCAG-GCGG--------GGGAAGGCAACUUCCCA---------GGGGGCAACCCC-GAACCGCAGCAGCGACAU-UCACAAGGAAUC-GGCCACCGCUGGG-------------GUCACA-CGGCGUUGGU----UUAAA-UUACGUGAA-UC------GCCCUGG-UCCGGCCCGUCGAUCGGCUAAGUCCAGGGU---UAAAU--CCAAAUA--GAU-CGACUAAGCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_pertu Borde_parap GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGCUCAGGGCAUGC--CGAGC--ACCAGUAA--GCUCGUUAAUCC---------ACUGGA---ACACU-ACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA------------------------GCGGUGAGC---------------------------CGCUGCACUGAUCU-------------------GUCCUUGGGUCAG-GCGG--------GGGAAGGCAACUUCCCA---------GGGGGCAACCCC-GAACCGCAGCAGCGACAU-UCACAAGGAAUC-GGCCACCGCUGGG-------------GUCACA-CGGCGUUGGU----UUAAA-UUACGUGAA-UC------GCCCUGG-UCCGGCCCGUCGAUCGGCUAAGUCCAGGGU---UAAAU--CCAAAUA--GAU-CGACUAAGCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_parap Borde_bronc GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGCUCAGGGCAUGC--CGAGC--ACCAGUAA--GCUCGUUAAUCC---------ACUGGA---ACACU-ACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA------------------------GCGGUGAGC---------------------------CGCUGCACUGAUCU-------------------GUCCUUGGGUCAG-GCGG--------GGGAAGGCAACUUCCCA---------GGGGGCAACCCC-GAACCGCAGCAGCGACAU-UCACAAGGAAUC-GGCCACCGCUGGG-------------GUCACA-CGGCGUUGGU----UUAAA-UUACGUGAA-UC------GCCCUGG-UCCGGCCCGUCGAUCGGCUAAGUCCAGGGU---UAAAU--CCAAAUA--GAU-CGACUAAGCA-UGUAG----------------------AACUGGUUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_bronc Borde_avium GGGGCCG----AUC-CGGA--UUCGACGUGGGUCAU-----GAAACAGUUCAGGGCAUGU--CGAGC--ACCAGUAC--GCUCGUAAAACC---------ACUGGA---AACAAUACAAACGCCAACGACGAGCGU---------------------------------------------------------UUCGCUCUCGCCGCUUAA------------------------GCGGUGAGC---------------------------CGCUGCACUGAUCU-------------------GUCCUUGGGUCAG-GCGGAGGAAGCAACUCCCGUAAGGGAGCCAUCGCCUAAAGGGGCAACCCUUGAACCGCAGCAGUGUUAU-UCACAAGGAAUC-GGUCUGCGCUGGG-------------GUCACA-CGGUUCAGGC----UUAAA-UUACGUGAA-UC------GCUUCGG-UCCGGCCCGUUGAUCGGCUAAGUCCGGGGU---UAAAU--CCAAAUA--GAU-CAACUAAGCA-UGUAG----------------------AACUGACUGCGG------AGGGCUUGCGGAC-GGGGGUUCAAUUCCCCC-CGGCUCCACCA Borde_avium