Alpha-Proteobacterial tmRNA Alignment 15-Feb-2006 by Kelly Williams for The tmRNA Website, with base-pairing color-coded as in home page diagram. Underline marks the predicted reading frame for the proteolysis-inducing peptide tag. Lowercase marks segments not homologous to tmRNA, intervening segments that are absent in the mature tmRNA, and portions of the expected 3-prime CCA tail that are not encoded in the genome.

Mitochondria
Recli_amer1 GGGGAUG----UUUUUAGU-AUUCGACAUAGUGGAAUUUAUUUGUGGAAUUUUUAAAUUUUAUUUUUUUAUCUACUUUUAAGAAGGAUUUUUU****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AAAAACACCUUGUUAAAUAAGUAAAUAAAAAAAAUAAAAUUUAAAUUAUUUUUUUAUAAGAAUGACUAUGGAA-CCGAGGGCGGAUCUCGG-CAUCUCCAuaa Recli_amer1
Recli_amer2 GGGGAUG----UUUUUAGG-AUUCGACAUAGUAAUAUA********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************UAUAUUAACUAUGGAC-CCGAGGGCAGUUCUCGG-CAUCUCCAuuu Recli_amer2
Recli_amer3 GGGGAUG----UUUUUAGA-AUUCGACAUAGUACAAUAUUAUGAGA*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************UUUCGUAGUAACUAUGGAC-CCGAGGGCAGUUCUCGG-CAUCUCCAucu Recli_amer3
Secul_ecuad GGGAAUGAUAUAUACUAGA-GAUCGACAUUCAAAAAUGUAACCAAACAUAAAAAA******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************UUUUUAGACAAUCUAACGAAUGGAC-CCAUGGGCAGUUCAUGG-CAUUCCCAgua Secul_ecuad
Histi_aroid GGGGGUG----UUAAUAA--AUUCGACAUAGUAGC***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GCUACUAUGGAC-CCAUGGGUGGUUCAUGG-CAUUCCCAggc Histi_aroid
Jakob_liber GGGGAUG-----AAUUAGU--UUAGAUAUUUAAGUAAUCCAUGAAAAUUCAUCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAUUUUGUAAUAUUGCUUAGAUAAAA-CCAUGGGCAGUACAUGG-CAUCUCCAcca Jakob_liber
Caulobacterales
Caulb_cresc GGGGCCG------AUCAGC--AUCGACAGACGUG------UAAAGGUGUCUGCUUUCUCU--CGGC---UUGGCCC----ACCGUU-UC-----------GGGCC-----UUUAUCUAAAUGCGAACGAUAACUUC------------------------------------------------GCUGAAGAGUUCGCCGUCGCUGCGUAA--------------------UGCGGUGCAGGUGAAUUCGCC-------------------UCUUAAGU------------------------CCUAG-GGGUUCAGA-----------------------------------------------------------------------UCC-CUAGGCG--GGGCCC-------------------GGAGGGA-GCCU------GCCAACAGAA-UCCCUCCACCU****************************************************GUCCGGCUUCGGCCGAACUAUGGG-GAUAA----------------------ACGCGCACGUAA-----UAAGCGGACUGGAC-CCGGGUGCGAUUCCCGG-CGGCUCCACCA Caulb_cresc
Rhodobacterales
Hyphm_neptu GGGGCCG-----AAAUAGU--GUCGACGGACGUG------UAAAGACGA-GGCUUUCGCU--CGC----UUGAGCU-----GCGUUAGA----------AGCUCAA---AAGCAAAUAGUUGCAAAUGACAACUUU------------------------------------------------GCUGAGGGCGAAUUGCUCGCCGCGUAA---------------------GCGGUGACGGUUUUUCCGA---------------------CCUAAGU------------------------CCUGG-GGCUUCAGA-----------------------------------------------------------------------CCC-CUAGGCG--GGGCCC-------------------GGGGGC--GCCU------GGCAACAGAA--GCCCCCACCU****************************************************GUC----UUCG----GACUAUGGC-GAUAA----------------------ACGCGCGUGUAA-----UAAGCGGCUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Hyphm_neptu
Parcc_denit GGGGCCG-----AAACAGG--AUCGACGAACGUC------UAAAGCUGUUUGCUUUGUCU--CGGUG--AGCUAC----CACCGUCAUC-----------GGUGCA---AAAUGUACAGUUGCCAACGACAACCGU---------------------------------------------------GCUCCGGUGGCUCUGGCUGCGUAA---------------------GCAGCU-CGGGUAACCGAAA--------------------CUUAAGC------------------------CCUUCCGC-CUAG-C-----------------------------------------------------------------------AGCGUAAGGCG--GGGCCC-------------------GCAGGA--GCCU------GGCAACAGAA--UCCUGCACCU****************************************************GUUCGGGUUCGCCCGGACUAUGGA-CAUAA----------------------ACGCGCAGGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Parcc_denit
Rhobr_sphae GGGGCCG-----AAACAGG--AUCGACGAACGUC------UAAAGGGGUUGGCUUUGUCC--CGGUG--AGGUAC----CACCGUUAUC-----------GGUCCG---AAAAGUACAGUUGCCAACGACAACCGU---------------------------------------------------GCUCCGGUGGCUCUGGCUGCGUAA---------------------GCAGUU-CGAGUUAUCGAAA--------------------CUUAAGC------------------------CCUUGCGC-UUAG-C-----------------------------------------------------------------------CGCGUAAGGCG--GGGUUC-------------------GCAGGU--ACCU------GGCAACAGAA--ACCUGCACUU****************************************************GUCCGGGGCAACCCGGACUAUGGA-CAUAA----------------------ACGCGCUCGUCA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Rhobr_sphae
Uncul_bone2 NNNNNNN-----NNNNNNN--NNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNN--NNNNN--NNNNNN----NNCCGUUAUC-----------GGCGUA---AAAUGUACAAUGGCAAAUGACAAUCGU---------------------------------------------------GCUCCAAUGGCGAUGGCCGCGUAA---------------------GCGACC-GGAACUAUUGAAA--------------------CUUAAG-------------------------UCGUAACGUUUAG-G-----------------------------------------------------------------------GACCUAAGGC---GGGUUUC------------------GCAGGU--ACCU------GGCAACAGAA--ACCUGCACUU****************************************************NNNNNNNNNNNNNNNNNNNNNNNN-NNNNN----------------------NNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNN Uncul_bone2
Jannas_CCS1 GGGGUCG-----AAAUAGG--AUCGACGAACGUC------UAAAGGGGUUAGCUUUGUCC--CGGUG--AGUUAC----CACCGUUAUC-----------GGUACA---CAUCGUACAGUUGCAAAUGACAACCGU------------------------------------------------GCUCCGGCAAUGGCUCUCGCAGCGUAA---------------------GCUGUC-CUGAGUCGCCGA--------------------CUUUAAGC------------------------CCUAGCGC-CUAG-C-----------------------------------------------------------------------CGCGUUAGGCG--GGGUUC-------------------GCAGGC--ACCU------GGCAACAGAA--GCCUGCACUU****************************************************GUUCC--UUCG--GGAGCUAUGGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGACUCCACCA Jannas_CCS1
Uncul_whal2 GGGGUCG-----AAAUAGG--AUCGACGGACGUC------UAAAGAUGUUUGCUUUUGCU--CGGUG--AGUUAC----CACCGUUAUC-----------GGUACA---UUUAAGCUAGUUGCAAAUGACAACAGA---------------------------------------------------GCUCCAGUUGCCCUGGCUGCGUAA---------------------GCAGUC-CGGAAUACUGAAAA-------------------CUUAGU-------------------------CCUAGGCU-UUGC--------------------------------------------------------------------------AGCCUAGGCG--GGGUCC-------------------GCAGGC--ACCU------GGCAACAGAA--GCCUGCACUU****************************************************GUCUCG-CUUG-CGGGACUAUGGU-GAUAA----------------------ACGCGCAUGUAA-----UAAACGGAUCGGAC-CCGGGGGCGGUACCCGG-CGACUCCACCA Uncul_whal2
Silic_pomer GGGGCCG-----AAACAGG--AUCGACGGACGUC------UAAAGGGGUUAGCUUUGUCU--CGGCG--GGGUAC----CACCGUUAUC-----------GGUCCG---CAAAGCAUAAUUGCCAACGACAAUCGU---------------------------------------------------GCUCCGGUUGCUCUGGCUGCGUAA---------------------GCAGUC-CGAAACACCGAAA--------------------CUUAAGC------------------------CCUUGCGC-CUAG-C-----------------------------------------------------------------------AGCGUAAGGCG--GGGUUC-------------------GCAGGU--ACCU------GGCAACAGAA--ACCUGCAUUU****************************************************GUUCC--CUCG--GGAACUAUGGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGUUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Silic_pomer
Silic_TM104 GGGGCCG-----AAAUAGG--AUCGACGGACGUC------UAAAGGGGUUAGCUUUGUCU--CGGCU--GUCUGC----CACCGUUACC-----------GGCGAA---AACAGUACAAUUGCAAACGACAAUCGU---------------------------------------------------GCUCCGGUUGCUCUGGCUGCGUAA---------------------GCAGUU-CGAGUCGAACCGA-------------------CUUUAAGU------------------------CCUAGCGC-CUAG-C-----------------------------------------------------------------------CGCGUUAGGCG--GGGUUC-------------------GCAGGU--ACCU------GGCAACAGAA--ACCUGCACUC****************************************************GUUCC--UUCG--GGAACUAUGGA-CAUAA----------------------ACGCGCUCGUAA-----UAAGCGGAUCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Silic_TM104
Rhizobiales
Agrbm_tume1 GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU--CGGC--AUGAUACC----GCCGUUAUC-----------GGGUCA----CAAGUGUAGUUGCAAAUGACAACAAC------------------------------------------------GCUAAGGAAUACGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAUUCCGCU-------------------CU-AAGU------------------------CCUUACGG-UUAG-C-----------------------------------------------------------------------CCCGUAAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACCU****************************************************GC-CGGGGCAACCCG-GCUAUGGC-GAUAA---------------------ACGGUCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_tume1
Agrbm_tume2 GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU--CGGC--AUGAUACC----GCCGUUAUC-----------GGGUCA----CAAGUGUAGUUGCAAAUGACAACAAC------------------------------------------------GCUAAGGAAUGCGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAUUCCGCU-------------------CU-AAGU------------------------CCUUACGG-UUAG-C-----------------------------------------------------------------------CCCGUAAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACCU****************************************************GC-CGGGGCAACCCG-GCUAUGGC-GAUAA---------------------ACGGUCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_tume2
Agrbm_vitis GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-AACUUUUGCU--CGGC--AUGAUACC----ACCGUCAUC-----------GGGUCA----CAAGUGUAGUUGCAAAUGACAACAAC------------------------------------------------GCUCAGGGUUACGCUGUCGCUGCUUAA--------------------UCGCGGU-GCCAGAAACCCAAA-------------------CU-AAGU------------------------CCUUACGG-GUAG-C-----------------------------------------------------------------------ACCGUAAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUU****************************************************GCCGGUGCUUGCAUCGGCUAUGGC-AAUAA---------------------ACGGUCGGUGAAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Agrbm_vitis
Rhizm_legum GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-UCUUUUUGCU--CGGC--AUUGUACC----GCCGUUAUC-----------GGGCUA----AAAUUGUAGUUGCAAACGACAACUAU---------------------------------------------------GCGGAAGCUCGUCUCGCUGCUUAA--------------------UCGCGGU-GUGACACUUCAAU--------------------CA-AAGU------------------------CCUAGUGG-UUCG-C-----------------------------------------------------------------------ACCUCUAGGCG--GGGUCC-------------------GAAGGC--ACCU------GGCAACAGAA--GCCUUCACCU****************************************************GCCGGCUUUCGGGUCGGCUAUGGC-GAUAA---------------------AUGAGCGGUGUAA-----UAAACCUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Rhizm_legum
Uncul_whal6 GGGGGCG-----AAACAGG--AUCGACGAGGGUG------UAAAGAGCG-ACUUUUUGUU--CGGU--AUUGUACC----ACCGUUAUC-----------GGGCUA----AACUUGUAGUUGCAAAUGACAACUAU---------------------------------------------------GCGGAAGCUCGUCUCGCUGCUUAA--------------------UUGCGGU-GUGACACUUCA---------------------CAUUAAGC------------------------CCUAGAGG-GUCG-C-----------------------------------------------------------------------ACUUCUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUU****************************************************GC-UGC-GCAA-GCA-GCUAUGAC-AAUAA---------------------ACGAGCGUUGCAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal6
Sinor_melil GGGGGCG-----AAAUAGG--AUCGACAAGGGCG------UAAAGAUCG-ACUUUUUGCU--CGGC--AUUGUACC----ACCGUUAUC-----------GGGCUA----AACUUAUAGUUGCAAACGACAACUAU---------------------------------------------------GCUGAAGCACGUCUCGCUGCCUAA--------------------CGGCGGU-GCGACACUUCAAAUC---------------------AAGU------------------------CCUUCCGGG-UAG-C-----------------------------------------------------------------------ACCGUAAGGCG--GGGUCC-------------------GAAGGC--ACCU------GGCAACAGAA--GCCUUCACCU****************************************************GC-CGUCUUCGGGCG-GCUAUGGC-AAUAA---------------------ACGGGCGAUGCAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Sinor_melil
Mesrhz_loti GGGGGCG-----AAAUAGG--AUCGACGAAGGUG------UAAAGAUCGUACUU-UUGCC--CGGC--AUUGUACC----ACCGUCAUC-----------GGGCUA----AACUUAUAGUUGCCAACGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCUUAA---------------------UGCAGU-GCGAUAGCUUCAAAUC--------------------AAGC------------------------CCUAGGGGU-UCG-C-----------------------------------------------------------------------ACUUCUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUU****************************************************GU-CGGCUUGA-CCG-ACUAUGGC-GAUAA---------------------AUGGGCGAUGAAA-----UAAGCCGUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Mesrhz_loti
Mesrhz_bnc1 GGGGGCG-----AAAUAGG--AUCGACGAGGGUG------UAAAGAUCGGACUU-UCGCU--CGGC--AUGGUACC----ACCGUUAUC-----------GGACCG---AACCUUAUAGUUGCCAACGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCUUAA---------------------UGCAGC-GCGAUAGCUUCAAUUC--------------------AAGU------------------------CUCAGGCCG-UCG-C-----------------------------------------------------------------------AGGCCUGAGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGUUUCGGCCG-ACUAUGGC-GAUAA---------------------ACGGACGAUGCAA-----UAAGCCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Mesrhz_bnc1
Uncul_whal5 GGGGGCG-----AAAUAGG--AUCGACGAGGGUG------UAAAGGAUC-UUCUUUUGCU--CGGU--AUGGCUCC----ACCGUUAUC-----------GGGCCA----UUAUGAUAGUUGCAAAUGACAACUAC---------------------------------------------------GCUGAGGCACGUCUAGCUNNNNNN--------------------NNNNNNN-NNNNNNNNNNN---------------------NNNNNNNN------------------------NNNNNNNN-NNNN-N-----------------------------------------------------------------------NNNNNNNNNNN--NNNNNN-------------------NNNNNN--NNNN------NNNNNNNNNN--NNNNNNNNNN****************************************************GU-CAG-GAAA-CUG-ACUAUGGC-GAUAA---------------------ACUGAUUUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal5
Uncul_whal4 GGGGCCG-----AAACAGG--AUCGACGGAUGGG------UAAAGGAGACUGCUUUUGCC--CGGG---UGAGG------CCCGAUACA-----------GGCUCA----UUCUUAAAGUUGCCAAUGACAACUUU------------------------------------------------GCUGAAGAAGUCCGUCUCGCUGCCUAG--------------------UCAGCGC-GUCUAACUUCGA--------------------CAUGAACU------------------------CCUGGGUGU-UCG-C-----------------------------------------------------------------------ACGCUCAGGCG--GGGUCC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CAG-CUUG-CUG-ACUAUGGC-GAUAA---------------------ACGCG-CUCGUAA-----UAACCAGACCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Uncul_whal4
Barto_hense GGGGGCG-----AAACAGG--AUCGACAAAAGUG------UAAAGAUUG-CUCUUUUACU--CGGU--AUAGUACC----ACCGUUAUC-----------GGACUA----AAUGAGUAGUUGCAAAUGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCCUGA--------------------GGUGGUG-UGAAUGCUUCAAACU---------------------AAGU------------------------CUUAAACCG-UCG-C-----------------------------------------------------------------------AGGUUUAAGCG--GGGUUC-------------------GAAGGC--ACCU------GGCAACAGAA--GCCUUCACUU****************************************************GC-UGG-CUUG-CCA-GCUAUGGU-AAUAA---------------------AUGGACAAUGAAA-----UAAGCUUAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Barto_hense
Barto_quint GGGGGCG-----AAAUAGG--AUCGACAAGGGUG------UAAAGAUUG-CUCUUUUACU--CGGC--AUAGUACC----ACCGUCAUC-----------GGACUA----AAUGAGUAGUUGCAAAUGACAACUAU---------------------------------------------------GCGGAAGCACGUCUCGCUGCUUAA--------------------UGUAGUG-UGAAUGUUUCAAACU---------------------AAGC------------------------CUUAAAUCG-UCG-C-----------------------------------------------------------------------AGAUUUAAGCG--GGGUUC-------------------GAAGGC--ACCU------GGCAACAGAA--GCCUUCACUU****************************************************GC-UGG-CUUA-CCA-GCUAUGGU-AAUAA---------------------AUGGACAAUGAAA-----UAAACUCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Barto_quint
Bruce_abort GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU--CGGC--AUGAUACC----ACCGUUAUC-----------GGGUCA----ACAGAGUAGUUGCAAAUGACAACAAU------------------------------------------------GCUCAGGGUUAUGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAACCCACU-------------------CUAAAGU------------------------CCUUAGGG-UUAG-C-----------------------------------------------------------------------CCCUUAAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGCGCAAGCCG-ACUAUGGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Bruce_abort
Bruce_melit GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU--CGGC--AUGAUACC----ACCGUUAUC-----------GGGUCA----ACAGAGUAGUUGCAAAUGACAACAAU------------------------------------------------GCUCAGGGUUAUGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAACCCACU-------------------CUAAAGU------------------------CCUUAGGG-UUAG-C-----------------------------------------------------------------------CCCUUAAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGCGCAAGCCG-ACUAUGGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Bruce_melit
Brucel_suis GGGGGCG-----AAACAGG--AUCGACAAGGGUG------UAAAGAUCG-CUCUUUUACU--CGGC--AUGAUACC----ACCGUUAUC-----------GGGUCA----ACAGAGUAGUUGCAAAUGACAACAAU------------------------------------------------GCUCAGGGUUAUGCUCUCGCUGCCUAA--------------------UGGCGGU-GCGGGAAACCCACU-------------------CUAAAGU------------------------CCUUAGGG-UUAG-C-----------------------------------------------------------------------CCCUUAAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGCGCAAGCCG-ACUAUGGU-GAUAA---------------------ACGGACGGUGUAA-----UAAACCCAUUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Brucel_suis
Rhops_palu1 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC--CGGU--AUUGUUCC----GCCGUUAUC-----------GGGCUA----CUGCAAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAC--------------------UUUAAAGC------------------------CCUAACGGGUUAAGC-----------------------------------------------------------------------UCCGUUAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUC****************************************************GU-CGGGGCAACCCG-ACUAUGGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCc Rhops_palu1
Rhops_palu2 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-UGCUUUUUCC--CGGU--AUUGUUCC----GCCGUUAUC-----------GGGCUA-----UGCAAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAA-------------------GUCUGAAGU------------------------CCUGACGGGUUAAGC-----------------------------------------------------------------------UCCGUUUGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GUCGGG-GCAA-CCCGACUAUGGA-AAUAA---------------------AUGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCc Rhops_palu2
Rhops_palu3 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCG-AGCUUUUGUC--CGGA--AUGGUUCC----GCCGUGAUC-----------GGGCCA-----UGCAAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCAGCGUAA--------------------CGCUGCU-UGAAA-GACCAC--------------------AUGAAAGU------------------------CCUGGCGGGUUAAGC-----------------------------------------------------------------------GCCGCCAGGCG--GGGUUC-------------------GGAGGC--GCCU------GGCAACAGAA--GCCUCCACUG****************************************************GCCAG--UGCG--CUGGCUAUGAC-AAUAA---------------------ACCGCCGUCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Rhops_palu3
Rhops_palu4 GGGGGCG-----AAACAGG--AUCGAUGGCCGCGA-----AGAAGUGUU-GAAUUGUUCC--CGGC--AUGAUACC----GCCGUUAUC-----------GGGUCA-----AAACCUAAAUGCAAACGAUAACGUU---------------------------------------------CGCAUGAACGAAGUGCGCCUCGCGGCGUAA--------------------------------CCGUUCG--------------------------------------------------------------------------------------------------------------------------------------------------------GGGUA----------------------GGUCC-ACCU------AGCAACAGAACGG-CC--AUGG****************************************************GUC----GCAA----GACGAUGGC-GCUGA---------------------AACUCAACGCGG-------ACUGCGGGCAGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCc Rhops_palu4
Rhops_palu5 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCU-UGCUUUUUCU--CGGU--AUUGUUCC----GCCGUUAUC-----------GGGCUA----AUGCAAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCGGUU-UGAAA-GACCAAG-------------------UCUAAAGU------------------------CCUAACGGGUUAAGC-----------------------------------------------------------------------UCCGUUAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GU-CGGGGCAACCCG-ACUAUGGA-AAUAA---------------------AUGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Rhops_palu5
Brdrz_japon GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGCG-UGCUUUUUCC--CGGU--AUUGUUCC----GCCGUUAUC-----------GGGCUA----CUGCAAUAGUUGCCAACGACAACUUU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAU--------------------CUUAAAGU------------------------CCUAACGGGUUAAGC-----------------------------------------------------------------------UCCGUUAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GC-CGG-UUCG-CCG-GCUAUGGA-AAUAA---------------------ACGGUCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Brdrz_japon
Nitbr_hambu GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCU--CGGU--AUGGUUCC----GCCGUUAUC-----------GGGCUA-----UGCAAUAGUUGCAAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAU--------------------UCUGAAGU------------------------CCUGACGGGUUAAGC-----------------------------------------------------------------------UCCGUCAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUC****************************************************GC-CGG-UUCG-CCG-GCUAUGGA-AAUAA---------------------ACGGCCGUCGUAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_hambu
Nitbr_winog GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC--CGGU--AUGGUUCC----GCCGUUAUC-----------GGGCUA-----UGCAAUAGUUGCAAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAC--------------------UCUGAAGC------------------------CCUGACGGGUUAAGC-----------------------------------------------------------------------UCCGUCAGGCG--GGGUCC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUU****************************************************GC-CGG-UUCG-CCG-GCUAUGGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_winog
Nitbr_Nb311 GGGGGCG-----AAACAGG--AUCGACGAGGGCG------UAAAGGGCU-CGCUUUUUCC--CGGU--AUGGUUCC----GCCGUUAUC-----------GGGCUA-----UGCAAUAGUUGCAAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCUGCGUAA--------------------CGCAGUU-UGAAA-GACCAC--------------------UCUGAAGU------------------------CCUGAUGGGUUAAGC-----------------------------------------------------------------------UCCGUCAGGCG--GGGUUC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUC****************************************************GC-CGG-UUCG-CCG-GCUAUGGA-AAUAA---------------------AUGGCCGCCGCAA-----UAAACCAUUCGGAC-CCGGGGGCAGUACCCGG-CGCCUCCACCA Nitbr_Nb311
Uncul_farm1 GGGGCCG-----AAACAGG--AUCGACGAGGGCG------UAAAAGGCG-CGCUUUUGCC--CGUU--AUGGUUCC----GUCGUUAUC-----------GGACCA-----AAUCAUAGUUGCCAACGACAACUAU---------------------------------------------------GCUCCGGUUGCUCAGGCCGCGUAG----------------------CGGCU-UGAAA-GACCG---------------------AUUNCAGU------------------------CCUAGCGGGUUAAGC-----------------------------------------------------------------------UCCGAUAGGCG--GGGUCC-------------------GGAGGC--ACCU------GGCAACAGAA--GCCUCCACUA****************************************************GCCGGC-GCAA-GCCGGAUAUGGC-GAUAA---------------------ACGGCCGUCGUAA-----UAAACCUUUCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCc Uncul_farm1
Mebrm_extor GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGUG-AACUUUCGCU--CGGC--AUGGUUCC----GCCGUUAUC-----------GGGCCU----UUGCAAUAGUUGCCAACGACAACUUU---------------------------------------------------GCUCCGGUGGCUGUCGCCGCGUAA---------------------GCGGUG-CCAAAAACCGAC---------------------CUAAAGU------------------------CCUAGCGG-GUAG-C----------------------------------------------------------------------ACCGCAUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUC****************************************************GCCGGUCGCAAGGCCGGCUAUGGC-GAUAA---------------------ACGUUCUUCGAAA-----UAAACCUAUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCc Mebrm_extor
Rhodospirillales
Magsp_magn1 GGGGGCG-----AAAUAGG--AUCGACGAGGGCG------UAAAGGGGG-AGCUUUCGCU--CGGC--AUGGUUCC----GCCGUUAUC-----------GGGCCU----UUGCAAUAGUUGCCAACGACAACUUU---------------------------------------------------GCUCCGGUGGCUGUCGCCGCGUAA---------------------GCGGUG-CCAAAAACCGAC---------------------CUAAAGU------------------------CCUAGCGG-GUAG-C----------------------------------------------------------------------ACCGCAUAGGCG--GGGUUC-------------------GGAGGU--ACCU------GGCAACAGAA--ACCUCCACUC****************************************************GCCGGUCGCAAGGCCGGCUAUGGC-GAUAA---------------------ACGUUCUUCGCAA-----UAAACCUAUCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Magsp_magn1
Magsp_magn2 GGGGGCG-----AAAUAGG--AUCGACGUGCGCAG-----UAAAGGUCU-GGUUUGCGUU--CGGC--AUGAUACC----ACCGUUAUC-----------GGGUCA---AUCCUAACAAGUGCCAACGACAACGUU------------------------------------------------------GAACUUGCCGCUGCGGCUUAG-----------------------------UCCGUAAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------CGGUCC-------------------GGGGGGA-ACCG------GGCAACAGAACUCCCCCCACUU****************************************************G-CCGG-GCAA-CCGG-CUAUGAC-GCUAA---------------------ACGCCACACGGAA-----UAGACGUUACGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Magsp_magn2
Alprot_SAR1 GGGGGUG-----AUAUAGG--AUCGACGAAUGCU------UAAAGGUAA-GUUUUUCUCU--CGGU--AUUGUACC----ACCGUUAUC-----------GGGCUA-----UUUUAUAAAUGCUAACGAUGAAUUA------------------------------------------------------------GCGCUCGCUGCUUAA-----------------------UCUAAUUAGGUAAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGGAGAC-ACCG------GGCAACAGAA-GUCUCCCACUU****************************************************GCUGGGGAUAU-CCCAGCUAUAGG-GAUAA---------------------ACGGCUUGCGUAA-----UACCCAUUACGGAC-CCGGGGGCGGUACCCGG-CACCUCCACCA Alprot_SAR1
Uncul_whal3 GGGGGCG-----AAAUAGG--AUCGACGCGUGUAA-----UAAAGGCUU-GGUUUGUGCU--CGGC--AUGGUACC----GCCGAUAUC-----------GGGCCAU----UUUGAUAAGUGCCAAUGAUAACACA---------------------------------------------------GAAGCACUUGCUGUCGCGGCCUAA----------------------------CACGCCAUAACGACAA-------------------------------------------------------------------------------------------------------------------------------------------------CGGGGUUC-------------------GGGCGGC-ACCU------GGCAACAGAA-GCCGCCCACUU****************************************************GC-CGG-CUUG-CCG-GCUACGGU-GCUAA---------------------ACGCCAAGCGGAA-----UAAGCACAGCGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Uncul_whal3
Rhspi_rubru GGGGGCG-----AAAUAGG--AUCGACACGCGUGG-----UAAAGAUAA-AGGUUGUGUU--CGGC--AUGGUAUCC---ACCGUUAUC-----------GGGCCA---ACUCUGACAAGUGCCAACGACAACGUU------------------------------------------------------GAACUUGCCGCUGCGGCCUAA---------------------------ACACCCGUAAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGGGGGGCACCG------GGCAACAGAAGCCCCCCCACUU****************************************************GC-CGGCUUGU-CCG-GCUAUGAC-GCUAA---------------------ACCCUUUAUGGAA-----UAAGCGUUGUGGAC-CCGGGGGCGGUACCCGG-CGCCUCCACCA Rhspi_rubru
Gluco_oxyda GGGGACG-----AAACAGG--CUCGACACGCAUGG-----UAAAGACUU-AUCUUUUGCC--CGGC--AUUGUACC----ACCGUCAUC-----------GGGCUA----AACUUACAAGUGCCAACGAUAACUCA---------------------------------------------------GAGGUGCUCGCUGUCGCUGCAUAA------------------------------GCGAUAAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGGAGGGCACCG------GGCAACAGAAGCCCUCCCACCU**************************************************GCAAGGGGUUCGUCCCCGGCUAUGGC-GAUAA---------------------ACGGUAAGUGAAA-----UAAGUGUUGUGGAC-CCGGGGGCAGUGCCCGG-CGUCUCCACCA Gluco_oxyda
Sphingomonadales
Nsphg_aroma GGGGCCG-----AACUAGG--AUCGACGUGUGUUG-----AAAAGCGUU-GUU-UUCACC--CGGG--CUGAGUAA----CCCGUUCAA-----------GGCUCA---AAACUCACAAGUGCCAACGACAACGAA------------------------------------------------------GCACUUGCUCUCGCGGCGUAA-----------UUCUAGGGGCUAACGCCCUGAAGUUACUAAGUUAGAGCA---------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGACCGA-ACCG------GGUAACAGAA-UCGGAAACCGG****************************************************GC-CGGUUCAGGCCG-GCUAUGGU-GAUAA---------------------ACUGCGGCGUGCA----AUAGGCACAGCGGAC-CCGGGGGCGGUACCCGG-CGGCUCCACCA Nsphg_aroma
Sphpx_alask GGGGCCG-----AACCAGG--AUCGACGUGUGUUC-----AAAGACGAU-GCU-UUCUUC--CGGG--CUGAGUAA----CCCGUUAAA-----------GGCUCA---AAACCAAUAAGUGCUAACGAUAACGAA------------------------------------------------------GCACUCGCUCUUGCUGCCUGA-----------CCGAUAAGCCUCACGGCCUAAGGUUAGACAAAUAGAACG---------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------GGACCGA-ACCG------GGCAACAGAA-UCGGAAACCAG****************************************************GU-CGGCUUCGGCCG-ACUAUGAG-GAUAA---------------------AUGGUGUCGUGGA----AUAGACACAGCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Sphpx_alask
Eryba_litor GGGGCCG-----AACCAGG--AUCGACGUGUGUUG-----AAAGGCAUU-GUU-UUCACC--CGGG--CUGAGUAU----CCCGCAAAA----------CUGUUCA---AAACACACAAGUGCCAACGAUAACGAA------------------------------------------------------GCACUCGCUCUCGCAGCGUAA-----------CAUGACGGCCUAACGGCCUAACGUUACAAAGCUAAAGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGACC-C-ACCG------GGCAACAGAAGCGGAUUCCGGG****************************************************GU-CCGUUUCGGCGG-GCUAUGGU-GAUAA---------------------ACUGCGGUGUGUA----AUAGACGCAACGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Eryba_litor
Uncul_farm4 GGGGGCG-----AAAUAGG--AUCGACGAGUGCAG-----UAAAGGCCU-GGUUGCCGAU--CGGU--AUGAGACC----ACCGUGAC------------GGCUCAU-----CACACAAGUGCCAACGAUAACGAG------------------------------------------------------GCGCUCGCUCUUGCUGCGUAA------------CUGAGGUCCUAACGGAUUGAAGUUACAAGGCUAAAGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGACCCC-ACCG------GGCAACAGAAGGGGAUUCCAGC****************************************************GCCGGG-GCAA-CCCGGCUAUGUC-GGUAG---------------------AAUGUCGGGUGGA----AUAAGCAUUUCGGACCCGGGGGGCAGUACCCCGGCGCCUCCACCA Uncul_farm4
Uncul_farm5 GGGGGCG-----AAAUAGG--AUCGACGAGUGCAA-----UAAAGACGC-GGUUGCCGAU--CGGU--AUGGAUGCC---ACCGUGAC------------GGCUCA----AUCACACAAGUGCCAACGAUAACGAG------------------------------------------------------GCGCUCGCUAUUGCUGCGUAA------------CUGACGGCCUGACGGUCUGACGUUACAAAGCUAAAGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGACCCC-ACCG------GGCAACAGAAGGGGAUUCCAGC****************************************************GCCGGG-GCAA-CUCGGCUAUGUC-GGUAG---------------------ACUGUCGCGUGGA----AUAAACACUUCGGACCCGGGGGGCAGUACCCCGGCGCCUCCACCA Uncul_farm5
Zymom_mobil GGGGGCG-----AAACAGG--AUCGACGUGUGUAG-----UAAAGACUU-GAUUGCCAUC--CGGC--GUGAUUGA----GCCGUUAAA----------CCGAUCA----UUUUUAUAAGUGCCAACGAUAACGAG------------------------------------------------------GUACUCGCUGUUGCUGCGUAA------------UGGAAACCUUCACGGGUAGACAUUACUAAGUAAGAGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGGCUGC-ACCG------GGCAACAGAAGCAGAUUCCAGC****************************************************GUCAC--UUCG--GUGACUACGAU-GGUAG---------------------ACUGUUAAGUGAA----AUAGACUCGACGGACCCGGAGGGCAGUACUCCGGCGCCUCCACCA Zymom_mobil
Sphin_elode GGGGCCG-----AACCAGG--AUCGACGUGUAUUG-----AAAAGCGCU-GUC-UUCGCU--CGGA--AUGGGACC----ACCGCAAC------------GGCCCA-----UUACACAAGUGCCAACGAUAACGAA------------------------------------------------------GCACUCGCUAUUGCGGCGUAA------------CCUCACGGCUUAACGGCCUAAGGUUAUUCUAAAAUGCG---------------------------------------------------------------------------------------------------------------------------------------------CGGUU--------------------GGGCCAC-ACCG------GGCAACAGAAGUGGACUCCAGC****************************************************GCCGGG-UUCG-CCCGGCUAUGGC-GAUAA---------------------ACAAUGGCGUAUA----AUAGAUGCAGCGGAC-CCGGGGGCAGUACCCGG-CGGCUCCACCA Sphin_elode
Rickettsiales
Ehrli_chaff GGGGAUG-----AAACAGG--AUCGACAUGCAUAG-----UAAAGGGGAUAGUUUUUGCU--CGG----UGAGAAAACA-GCCGUUUAA----------AUGCUCA---AAAUUUAUAAGUGCAAACGAUAAUUUC---------------------------GUUUUUGCUAAUGAUAAUAAUAGCAGUGCUAACUUAGUAGCUGCUUAG------------------------------UUUUAUUAUUAGCG---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUUUUU--------------AAGGGUUUU-CCG------GGCAACAGAAAAACCCUUUUUU****************************************************GUGCU--UUU---AGCACUAUGGC-AAUAA---------------------AGGCAUCUUAAAA-----UAGAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACuu Ehrli_chaff
Ehrli_rumi1 GGGGAUG-----AAACAGG--CUCGACAUGCAUAG-----UAAAGGGGAUAGCUUUUGCU--CGG----UGAGAAAACA-GCCGUUUCA---------AGUGAUCA---AAACUUAUAAGUGCAAACGAUAAUUUC---------------------------GUUUCUGCUAAUGAUAAUAAUAGCACUGCUAACUUAGUAGCUGCUUAG------------------------------UUUUAAAAUUAGCA---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUUUU----------------GGGGUUUU-CCG------GGUAACAGAAAAACCCC-UCAC****************************************************GUGCU--UUU----GCACUAUGGC-AAUAA---------------------AUGCAUCUUAGAA-----UAAAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Ehrli_rumi1
Ehrli_rumi2 GGGGAUG-----AAACAGG--CUCGACAUGCAUAG-----UAAAGGGGAUAGCUUUUGCU--CGG----UGAGAAAACA-GCCGUUUCA---------AGUGAUCA---AAACUUAUAAGUGCAAACGAUAAUUUC---------------------------GUUUCCGCUAAUGAUAAUAAUAGCACUGCUAACUUAGUAGCUGCUUAG------------------------------UUUUAUAAUUAGCA---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUUUU----------------GGGGUUUU-CCG------GGUAACAGAAAAACCCC-UCCC****************************************************GUGCU--UUU----GCACUAUGGC-AAUAA---------------------AUGCAUCUUAGAA-----UAAAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Ehrli_rumi2
Ehrli_canis GGGGGUG-----AAACAGG--AUCGACAUGCAUAG-----UAAAGGGGAUAGUUUUUGCC--CGG----UGAGAAAGCA-GCCGUUUAA----------AUGCUCA---AAAUUUAUAAGUGCAAACGAUAAUUUC------------------------GUUUUUGCAAAUGACAAUAAUAGCAGUGUUGCUGGCUUAGUGGCUGCUUAG------------------------------UUUUGUCAUUAGCG---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUUUUA--------------GAGGGUUUC-CCG------GGCAACAGAAAAAUCCUCUUUU****************************************************GUGUU--UUA---AGCACUAUGGC-AAUAA---------------------AGGCAUCUUAAAA-----UAGAUGUAUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACuu Ehrli_canis
Anapl_phago GGGGAUG-----AGACAGG--UUAGACAGGCGUAG-----UAAAGAAGCUGGCUGUUGCU--CGGU--GGGAAUUCCA--GCCGUAUAA----------UUGGGUC---AUAUUUAUAAGUGCAAACGAUGAUUUC---------------------------GUUGCCGCUAAUGACAACGUGGAAACAGCUUUCGUAGCUGCAGCCUAG------------------------------UGUGCCU-UUAGCG---------------------------------------------------------------------------------------------------------------------------------------------------CGGUCUC------------------GGAGGCUUACCG------GGCAACAGAAAAGCCUCCAUUU****************************************************GUGA---UCUU---UCACUAUGGC-AAUAA---------------------AAGUUACUUGGAA-----UAGACGUUUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACgu Anapl_phago
Anapl_margi GGGGAUG-----AAACAGG--AUAGACAGACGCAA-----UAAAGAGGACGGCGUUUGCU--CGGU--GGGAAUUCCA--GCCGUAUAA----------GUGGGUC---AUUUUUAUAAGUGCAAACGAUGAUUUC---------------------------GUUGCCGCUAAUGAUAACAUGGAAACAGCUUUCGUAGCUGCUGCCUAG-----------------------------UUUUUGUCUUUAGCG---------------------------------------------------------------------------------------------------------------------------------------------------CGGUUUU------------------GGGGGCUUACCG------GGCAACAGAAAAGCCCCCGCCA****************************************************GUG----GUUU----CACUAUGGC-AAUAA---------------------AGGCCUCUUGGAA-----UAGGCGUUUUGGAC-CCGAGGGCAGUGCUCGG-CAUCUCCACug Anapl_margi
Neori_senne GGGGGUG-----AUUUAGU--UUCGACAGGUAU-------UAAAGGCUA-AACUUUUGUU--CGGU--UGAGUGAU----CCCGUGAU----------UCACAACA---CUUUUUAUAAGUGCAAACGACAAUUUU---------------------------------------GAAGCUGGUUCUGCUGAAUAUGCAGUAGCUGCCUAG------------------------------UUUAUAGGUAGUACAGCG-----------------------------------------------------------------------------------------------------------------------------------------------CGGUUU--------------------GGGGCG-GCCG------GUCAACAGAAC-UGCCCCAGUU****************************************************GCGC--UGUUUU--GCGCUAUGAC-AAUAA--------------------AUGGUUUUUCGUAA-----UAGGUAUCUUGGAC-CCGAAGGCGGAGUUCGG-CACCUCCACCg Neori_senne
Wolbachia_1 GGGGACG-----AAUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU--CGGU--UAGACACC----ACCGCUAAG-----------AGUUCA-----UAAUUUAAAUGCAAACGAUAAUUUU---------------------------------------GCUGCUGAAGACAAUGUCGACGCAAUAGCUGCUUAA--------------------UUUAAGCACUAUAACUUCAUUGCUAUAAGCA--------------------------------------------------------------------------------------------------------------------------------------------CGGUUC-------------------AGGGAAC-GCCG------GGUAACAGAA-GUUCCCCAAAA****************************************************GUACAU-UUU--GUGUACUAUAGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGUCUCCACCA Wolbachia_1
Wolbachia_2 GGGGGCG-----AAUAAGA--AUCGACAUGCAUAG-----UAAAGAUGG-UAACUUUGCU--CGGU--UAGAUACC----ACCGCUAAG-----------AGUUCA-----UAGUUUAAACGCAAACGAUAAUUUU---------------------------------------GCUGCUGAAGGUGAUGUU---GCGGUAGCUGCUUAA--------------------UUUAAGCACUAUAACUUCAUUACUAUAAGCA--------------------------------------------------------------------------------------------------------------------------------------------CGGCUU-------------------AGGGAAC-GCCG------GGUAACAGAA-GUUCCCCCCAG****************************************************GUGUAU-UUU--AUACACUAUGGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_2
Wolbachia_3 GGGGGCG-----AGUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU--CGGU--UAGAUACC----ACCGCUAAG-----------AGUUCA-----CAAUUUAGAUGCAAACGAUAACUUU---------------------------------------GCUGCUGAAGACAAUGUU---GCAUUAGCUGCUUAA--------------------UUUAGGCACUAUAACUUCAUCGCUAUAAGCA--------------------------------------------------------------------------------------------------------------------------------------------CGGUUU-------------------AGGGAAC-GCCG------GGUAACAGAA-GUUCCCCCAAA****************************************************GUGUAUUUUUU-AUACACUAUGGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_3
Wolbachia_4 GGGGGCG-----AUUAAGG--AUCGACAUGCAUAG-----UAAAGAUGG-UAGCUUUGCU--CGGU--UAGACACC----ACCGCUAAG-----------AGUUCA-----UAAUUUAAAUGCAAACGAUAAUUUU---------------------------------------GCUGCUGAAGAAUAU------CGUGUUGCUGCUUAA--------------------UUUA-GCACAACCGGUUUAUUACUA-AAGCA--------------------------------------------------------------------------------------------------------------------------------------------CGGUUU-------------------AGGGAAC-GCCG------GGUAACAGAA-GUUCCCCCAAA****************************************************GUACAU-UUU--GUGUACUAUAGC-AAUAA---------------------AAUUACCUUGUAA-----UAGGUGUAUUGGAC-CCGAGGGCAGUACUCGG-CGCCUCCACCA Wolbachia_4
Ricke_prowa GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAAGU-UGCUUUUACU--CGGU--AUGAUUCC----ACCGGUGGUUUUUGCCAUAUGGAUCA---AAACAAAGAAACGCAAACGAUAAUCGU------------------------------------------UAUGUAGGUGUUCCAGCUUUAGCUGCAGCUUAA------------------------------GCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GGGAUUU-GCCG------GGCAACAGAAAAA-UCCCAUAC****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_prowa
Ricke_typhi GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAAAU-UGCUUUUACU--CGGU--AUGAUCCC----ACCGAUGGCUUUUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAG---------------------------------------CGUUAUGUAGGUGUUGCCGCUUUAGCUGCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUU-------------------GGGAUUU-GCCG------GGCAACAGAAAAA-UCCCAUGC****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_typhi
Ricke_akari GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUUUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU---------------------------------------CGUUCUGUAGAU---UUAGCUCUA---GCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GGGGUUU-GCCG------GGCAACAGAAAAA-CCCCACAC****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_akari
Ricke_felis GGGGGCG-----AAAUAGG--AUCGACGUACCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUU-GCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU---------------------------------------CGUUAUGUAGGU---GCAGCUUUA---GCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GGGGUUU-GCCG------GGCAACAGAAAAA-CCCCACAU****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_felis
Ricke_ricke GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUGUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU---------------------------------------CGUUCUGUAGGUCGUUUAGCUUUA---GCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG------------------GAGGGUGU-GCCG------GGCAACAGAAAAACCCUCACUU****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_ricke
Ricke_cono1 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUGUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU------------------------------------------CGUUCUGUAGGUCAUUUAGCUUUAGCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GAGGGUGUGCCG------GGCAACAGAACAACCCUCACUU****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_cono1
Ricke_cono2 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--NNNN--NNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------NNNNNNN----------------------------------------------------------------------------------------------------------------------------------------------------------NNNNNN-------------------NNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNN****************************************************NN-NN--NNN---NN-NNNNNNNN-NNNNN---------------------NNNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNCCA Ricke_cono2
Ricke_cono3 GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGUU-UGCUUUUACU--NNNN--NNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------NNNNNNN----------------------------------------------------------------------------------------------------------------------------------------------------------NNNNNN-------------------NNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNN****************************************************NN-NN--NNN---NN-NNNNNNNN-NNNNN---------------------NNNNNNNNNNNNN-----NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN-NNNNNNNNCCA Ricke_cono3
Ricke_sibir GGGGGCG-----AAAUAGG--AUCGACGUGCCUAA-----UAAAAAGAU-UGCUUUUACU--CGGG--AUGAUUCC----GCCGAUGGCUUGUGCCAUAUGGGUCA---AAACAAAGAAACGCAAACGAUAAUAAU------------------------------------------CGUUCUGUAGGUCAUUUAGCUUUAGCAGCUUAA------------------------------UCCUACG----------------------------------------------------------------------------------------------------------------------------------------------------------CGGCUG-------------------GAGGGUGUGCCG------GGCAACAGAACAACCCUCACUU****************************************************GC-UA--AUA---UA-GCUAUAGU-AAUAA---------------------ACGUAAUUUAGAA-----UAGAGGUUGCGGAC-UCGGGGGCAGUACCCGA-CGCCUCCACCA Ricke_sibir